Wall clock time and date at job start Tue Mar 31 2020 06:03:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38267 * 119.88024 * 2 1 4 4 C 1.38963 * 120.23007 * 179.97438 * 3 2 1 5 5 N 1.39959 * 119.99457 * 180.02562 * 4 3 2 6 6 C 1.34775 * 119.99970 * 144.89268 * 5 4 3 7 7 O 1.21289 * 119.99581 * 4.61816 * 6 5 4 8 8 C 1.50694 * 120.00011 * 184.61971 * 6 5 4 9 9 C 1.52998 * 109.47020 * 179.97438 * 8 6 5 10 10 C 1.53003 * 109.46979 * 180.02562 * 9 8 6 11 11 C 1.50705 * 109.46966 * 180.02562 * 10 9 8 12 12 H 1.08005 * 119.99890 * 359.97438 * 11 10 9 13 13 C 1.37875 * 119.99756 * 179.97438 * 11 10 9 14 14 N 1.31511 * 120.00473 * 359.97438 * 13 11 10 15 15 Si 1.86803 * 119.99781 * 180.02562 * 13 11 10 16 16 H 1.48504 * 109.47333 * 90.00123 * 15 13 11 17 17 H 1.48501 * 109.47355 * 210.00179 * 15 13 11 18 18 H 1.48504 * 109.47275 * 330.00129 * 15 13 11 19 19 C 1.38625 * 120.00795 * 0.02562 * 4 3 2 20 20 C 1.39509 * 119.77100 * 0.02562 * 19 4 3 21 21 C 1.47739 * 120.11687 * 179.97438 * 20 19 4 22 22 O 1.21465 * 120.00341 * 180.02562 * 21 20 19 23 23 O 1.34715 * 119.99899 * 0.02562 * 21 20 19 24 24 C 1.37961 * 119.89211 * 179.97438 * 2 1 3 25 25 H 1.09001 * 109.47477 * 90.00262 * 1 2 3 26 26 H 1.09003 * 109.46561 * 209.99849 * 1 2 3 27 27 H 1.08995 * 109.47473 * 329.99749 * 1 2 3 28 28 H 1.07992 * 119.88860 * 359.97438 * 3 2 1 29 29 H 0.97001 * 119.99986 * 324.89024 * 5 4 3 30 30 H 1.09002 * 109.47433 * 299.99952 * 8 6 5 31 31 H 1.09003 * 109.46913 * 60.00329 * 8 6 5 32 32 H 1.09001 * 109.47746 * 300.00146 * 9 8 6 33 33 H 1.08996 * 109.47308 * 60.00666 * 9 8 6 34 34 H 1.08996 * 109.47152 * 299.99838 * 10 9 8 35 35 H 1.08995 * 109.47160 * 60.00352 * 10 9 8 36 36 H 0.97003 * 120.00379 * 179.97438 * 14 13 11 37 37 H 1.07998 * 120.11160 * 179.74870 * 19 4 3 38 38 H 0.96697 * 117.00260 * 180.02562 * 23 21 20 39 39 H 1.08008 * 120.00201 * 359.97438 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1958 1.1989 0.0000 4 6 3.5854 1.2074 0.0005 5 7 4.2777 2.4237 0.0011 6 6 5.4406 2.5370 0.6728 7 8 5.9297 1.5639 1.2067 8 6 6.1331 3.8725 0.7606 9 6 7.4216 3.7264 1.5725 10 6 8.1244 5.0826 1.6622 11 6 9.3939 4.9385 2.4614 12 1 9.6715 3.9761 2.8653 13 6 10.2010 6.0354 2.6768 14 7 9.8633 7.2072 2.1846 15 14 11.7750 5.8568 3.6669 16 1 12.8979 5.5208 2.7550 17 1 12.0689 7.1345 4.3642 18 1 11.6095 4.7730 4.6685 19 6 4.2860 0.0112 0.0005 20 6 3.5912 -1.1986 -0.0005 21 6 4.3301 -2.4779 -0.0011 22 8 3.7231 -3.5300 -0.0025 23 8 5.6773 -2.4776 -0.0001 24 6 2.1945 -1.1961 0.0005 25 1 -0.3634 0.0000 -1.0277 26 1 -0.3632 -0.8900 0.5138 27 1 -0.3634 0.8899 0.5138 28 1 1.6521 2.1319 -0.0004 29 1 3.9205 3.1853 -0.4820 30 1 6.3734 4.2239 -0.2429 31 1 5.4755 4.5913 1.2496 32 1 7.1811 3.3753 2.5760 33 1 8.0794 3.0076 1.0840 34 1 8.3650 5.4341 0.6589 35 1 7.4665 5.8011 2.1509 36 1 10.4309 7.9790 2.3365 37 1 5.3660 0.0158 -0.0031 38 1 6.1165 -3.3390 -0.0009 39 1 1.6527 -2.1305 0.0014 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001607677411.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:03:02 Heat of formation + Delta-G solvation = -146.957655 kcal Electronic energy + Delta-G solvation = -21883.578740 eV Core-core repulsion = 18368.217123 eV Total energy + Delta-G solvation = -3515.361617 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.130 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.87710 -41.11137 -39.58184 -37.22119 -36.29273 -35.90475 -34.11202 -33.68288 -31.40134 -29.48810 -27.91256 -26.04599 -25.89883 -23.52099 -22.12956 -21.82324 -21.13454 -19.24863 -18.82766 -18.40137 -17.78567 -17.32743 -16.89165 -16.87037 -16.73010 -16.49300 -16.01606 -15.22425 -14.97288 -14.59828 -14.53612 -14.26555 -14.04574 -13.77061 -13.33511 -13.07560 -13.06037 -12.80337 -12.68328 -12.66749 -12.60533 -12.50381 -12.39902 -11.86768 -11.55616 -11.47703 -11.38790 -11.24355 -10.77851 -10.53483 -9.90429 -9.26581 -8.20042 -6.29431 -0.44156 0.18253 1.31494 1.40085 1.40553 1.52094 1.61623 1.93320 2.05899 2.41979 2.67189 3.13325 3.61876 3.80382 3.92281 4.06477 4.16809 4.21665 4.27612 4.27752 4.32557 4.69725 4.79929 4.82890 4.91000 4.97907 5.08565 5.11133 5.13255 5.20244 5.24426 5.38122 5.44271 5.48951 5.55467 5.77328 5.85233 5.88736 6.28130 6.39669 6.86375 6.87026 7.12208 7.39257 8.91365 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.022362 B = 0.002817 C = 0.002545 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1251.819617 B = 9936.167937 C =10997.781809 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.074 4.074 3 C -0.097 4.097 4 C 0.127 3.873 5 N -0.661 5.661 6 C 0.516 3.484 7 O -0.558 6.558 8 C -0.126 4.126 9 C -0.084 4.084 10 C 0.026 3.974 11 C -0.547 4.547 12 H 0.050 0.950 13 C 0.004 3.996 14 N -0.929 5.929 15 Si 0.959 3.041 16 H -0.272 1.272 17 H -0.278 1.278 18 H -0.269 1.269 19 C -0.091 4.091 20 C -0.128 4.128 21 C 0.532 3.468 22 O -0.542 6.542 23 O -0.509 6.509 24 C -0.077 4.077 25 H 0.089 0.911 26 H 0.075 0.925 27 H 0.086 0.914 28 H 0.169 0.831 29 H 0.433 0.567 30 H 0.116 0.884 31 H 0.116 0.884 32 H 0.040 0.960 33 H 0.041 0.959 34 H 0.003 0.997 35 H 0.003 0.997 36 H 0.265 0.735 37 H 0.130 0.870 38 H 0.432 0.568 39 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.876 -12.732 -8.418 25.861 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.075 4.075 3 C -0.117 4.117 4 C 0.033 3.967 5 N -0.308 5.308 6 C 0.306 3.694 7 O -0.435 6.435 8 C -0.166 4.166 9 C -0.123 4.123 10 C -0.011 4.011 11 C -0.586 4.586 12 H 0.068 0.932 13 C -0.194 4.194 14 N -0.569 5.569 15 Si 0.784 3.216 16 H -0.198 1.198 17 H -0.203 1.203 18 H -0.194 1.194 19 C -0.111 4.111 20 C -0.130 4.130 21 C 0.378 3.622 22 O -0.434 6.434 23 O -0.323 6.323 24 C -0.096 4.096 25 H 0.107 0.893 26 H 0.094 0.906 27 H 0.105 0.895 28 H 0.186 0.814 29 H 0.273 0.727 30 H 0.134 0.866 31 H 0.134 0.866 32 H 0.059 0.941 33 H 0.060 0.940 34 H 0.021 0.979 35 H 0.021 0.979 36 H 0.073 0.927 37 H 0.147 0.853 38 H 0.294 0.706 39 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -20.768 -13.074 -8.031 25.821 hybrid contribution 1.541 -0.274 0.349 1.604 sum -19.226 -13.348 -7.682 24.634 Atomic orbital electron populations 1.20877 0.87450 1.04387 1.04000 1.19995 0.98202 0.90975 0.98334 1.21437 0.90887 1.00334 0.99083 1.17836 0.91884 0.85564 1.01435 1.43458 1.22764 1.12775 1.51835 1.21385 0.80195 0.91617 0.76252 1.90704 1.65067 1.40904 1.46847 1.21695 0.97418 0.93184 1.04291 1.21183 0.94688 0.97902 0.98492 1.19015 0.94087 0.92463 0.95543 1.21707 1.08010 0.95009 1.33827 0.93153 1.25867 1.01534 0.94971 0.97006 1.70052 1.39648 1.00417 1.46775 0.85543 0.79483 0.77715 0.78903 1.19775 1.20339 1.19360 1.21513 1.01164 0.91006 0.97464 1.19018 0.94059 0.89963 1.09974 1.20998 0.80886 0.89207 0.71088 1.90843 1.70091 1.34280 1.48204 1.84621 1.20295 1.42461 1.84879 1.21293 0.91158 0.99909 0.97269 0.89263 0.90580 0.89533 0.81365 0.72723 0.86599 0.86582 0.94085 0.93975 0.97884 0.97882 0.92667 0.85254 0.70577 0.83851 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.84 10.00 71.23 0.71 -0.12 16 2 C -0.07 -1.09 5.87 -19.92 -0.12 -1.20 16 3 C -0.10 -1.44 9.61 22.45 0.22 -1.22 16 4 C 0.13 2.74 6.29 38.11 0.24 2.98 16 5 N -0.66 -13.18 5.34 -303.60 -1.62 -14.80 16 6 C 0.52 14.87 7.67 87.66 0.67 15.54 16 7 O -0.56 -21.17 13.42 -3.06 -0.04 -21.22 16 8 C -0.13 -3.66 5.70 29.85 0.17 -3.49 16 9 C -0.08 -3.53 4.44 30.59 0.14 -3.40 16 10 C 0.03 1.33 4.97 29.85 0.15 1.48 16 11 C -0.55 -31.73 9.11 25.60 0.23 -31.49 16 12 H 0.05 2.90 7.74 -2.91 -0.02 2.87 16 13 C 0.00 0.25 5.46 84.65 0.46 0.71 16 14 N -0.93 -55.65 13.29 21.45 0.28 -55.36 16 15 Si 0.96 44.81 29.54 68.60 2.03 46.84 16 16 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 17 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 18 H -0.27 -12.28 7.11 99.48 0.71 -11.58 16 19 C -0.09 -2.44 8.26 22.67 0.19 -2.25 16 20 C -0.13 -3.18 5.87 -20.11 -0.12 -3.30 16 21 C 0.53 13.74 8.27 70.33 0.58 14.32 16 22 O -0.54 -15.61 17.13 19.95 0.34 -15.27 16 23 O -0.51 -11.45 12.68 -56.25 -0.71 -12.16 16 24 C -0.08 -1.51 9.24 22.55 0.21 -1.31 16 25 H 0.09 0.47 8.14 -2.39 -0.02 0.45 16 26 H 0.08 0.54 8.08 -2.39 -0.02 0.52 16 27 H 0.09 0.43 8.08 -2.39 -0.02 0.41 16 28 H 0.17 1.28 8.06 -2.91 -0.02 1.26 16 29 H 0.43 4.93 8.82 -92.71 -0.82 4.12 16 30 H 0.12 2.86 8.14 -2.39 -0.02 2.84 16 31 H 0.12 2.87 8.14 -2.39 -0.02 2.85 16 32 H 0.04 1.81 8.10 -2.39 -0.02 1.79 16 33 H 0.04 1.85 8.10 -2.39 -0.02 1.83 16 34 H 0.00 0.15 8.14 -2.39 -0.02 0.13 16 35 H 0.00 0.15 8.14 -2.39 -0.02 0.13 16 36 H 0.26 14.85 8.31 -92.71 -0.77 14.08 16 37 H 0.13 4.19 5.78 -2.91 -0.02 4.17 16 38 H 0.43 5.25 9.11 -74.06 -0.67 4.57 16 39 H 0.14 2.56 7.65 -2.91 -0.02 2.54 16 Total: -1.00 -78.80 342.02 3.61 -75.19 By element: Atomic # 1 Polarization: 9.94 SS G_CDS: -0.40 Total: 9.54 kcal Atomic # 6 Polarization: -16.50 SS G_CDS: 3.73 Total: -12.76 kcal Atomic # 7 Polarization: -68.83 SS G_CDS: -1.33 Total: -70.16 kcal Atomic # 8 Polarization: -48.23 SS G_CDS: -0.41 Total: -48.64 kcal Atomic # 14 Polarization: 44.81 SS G_CDS: 2.03 Total: 46.84 kcal Total: -78.80 3.61 -75.19 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001607677411.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.766 kcal (2) G-P(sol) polarization free energy of solvation -78.802 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.567 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.610 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.192 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.958 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds