Wall clock time and date at job start Tue Mar 31 2020 06:03:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.38262 * 119.88167 * 2 1 4 4 C 1.37961 * 120.22465 * 180.23164 * 3 2 1 5 5 C 1.39666 * 119.99383 * 359.49152 * 4 3 2 6 6 C 1.47743 * 120.11582 * 180.22944 * 5 4 3 7 7 O 1.21470 * 119.99477 * 179.97438 * 6 5 4 8 8 O 1.34705 * 119.99963 * 0.02562 * 6 5 4 9 9 C 1.39512 * 119.76509 * 0.25606 * 5 4 3 10 10 C 1.38620 * 119.77385 * 359.97438 * 9 5 4 11 11 N 1.39955 * 119.99625 * 180.02562 * 10 9 5 12 12 C 1.34772 * 120.00121 * 325.26013 * 11 10 9 13 13 O 1.21285 * 120.00114 * 4.51182 * 12 11 10 14 14 C 1.50696 * 120.00126 * 184.50735 * 12 11 10 15 15 C 1.53008 * 109.47232 * 180.02562 * 14 12 11 16 16 C 1.53005 * 109.46842 * 180.02562 * 15 14 12 17 17 C 1.50703 * 109.46662 * 180.02562 * 16 15 14 18 18 H 1.08004 * 120.00179 * 359.97438 * 17 16 15 19 19 C 1.37872 * 119.99857 * 179.97438 * 17 16 15 20 20 N 1.31515 * 119.99866 * 359.97438 * 19 17 16 21 21 Si 1.86798 * 120.00073 * 180.02562 * 19 17 16 22 22 H 1.48502 * 109.47358 * 90.00028 * 21 19 17 23 23 H 1.48501 * 109.47281 * 210.00107 * 21 19 17 24 24 H 1.48503 * 109.47394 * 330.00092 * 21 19 17 25 25 H 1.08995 * 109.47123 * 270.27385 * 1 2 3 26 26 H 1.09002 * 109.47196 * 30.27752 * 1 2 3 27 27 H 1.08999 * 109.46662 * 150.27300 * 1 2 3 28 28 H 1.08004 * 119.88823 * 359.97438 * 3 2 1 29 29 H 1.08006 * 120.00361 * 179.76962 * 4 3 2 30 30 H 0.96703 * 116.99612 * 180.02562 * 8 6 5 31 31 H 1.07998 * 120.11044 * 179.97438 * 9 5 4 32 32 H 0.96996 * 119.99836 * 145.26049 * 11 10 9 33 33 H 1.08999 * 109.47607 * 300.00269 * 14 12 11 34 34 H 1.09007 * 109.47201 * 60.00353 * 14 12 11 35 35 H 1.08995 * 109.47302 * 300.00180 * 15 14 12 36 36 H 1.09000 * 109.46568 * 60.00699 * 15 14 12 37 37 H 1.08995 * 109.47152 * 300.00068 * 16 15 14 38 38 H 1.08991 * 109.47243 * 60.00547 * 16 15 14 39 39 H 0.97005 * 119.99488 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1959 1.1988 0.0000 4 6 3.5755 1.2071 -0.0048 5 6 4.2810 0.0017 0.0010 6 6 5.7584 0.0074 0.0010 7 8 6.3697 -1.0422 0.0065 8 8 6.4274 1.1766 -0.0041 9 6 3.5856 -1.2078 0.0063 10 6 2.1994 -1.2048 0.0063 11 7 1.4971 -2.4154 0.0121 12 6 1.9885 -3.4827 -0.6479 13 8 3.0776 -3.4193 -1.1779 14 6 1.1850 -4.7551 -0.7272 15 6 1.9649 -5.8020 -1.5253 16 6 1.1486 -7.0936 -1.6063 17 6 1.9171 -8.1249 -2.3919 18 1 2.8900 -7.8831 -2.7936 19 6 1.3780 -9.3770 -2.5978 20 7 0.1934 -9.6716 -2.1083 21 14 2.3307 -10.6556 -3.5710 22 1 3.1828 -11.4469 -2.6474 23 1 1.3789 -11.5605 -4.2640 24 1 3.1879 -9.9758 -4.5752 25 1 -0.3633 0.0049 1.0276 26 1 -0.3634 0.8875 -0.5181 27 1 -0.3632 -0.8924 -0.5096 28 1 1.6521 2.1320 -0.0004 29 1 4.1100 2.1456 -0.0086 30 1 7.3932 1.1297 -0.0043 31 1 4.1254 -2.1431 0.0104 32 1 0.6566 -2.4861 0.4911 33 1 0.9987 -5.1306 0.2790 34 1 0.2346 -4.5544 -1.2218 35 1 2.1515 -5.4269 -2.5315 36 1 2.9149 -6.0026 -1.0302 37 1 0.9616 -7.4689 -0.6002 38 1 0.1988 -6.8927 -2.1016 39 1 -0.1856 -10.5527 -2.2529 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001607739254.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:03:05 Heat of formation + Delta-G solvation = -120.938309 kcal Electronic energy + Delta-G solvation = -22041.932758 eV Core-core repulsion = 18527.699425 eV Total energy + Delta-G solvation = -3514.233334 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.130 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -40.98128 -40.08781 -38.57201 -36.27359 -35.00801 -34.26075 -32.98725 -32.12522 -30.20240 -28.21968 -27.58606 -24.39804 -23.67599 -22.77799 -21.14567 -20.68383 -19.85084 -18.46358 -17.88345 -17.00848 -16.27483 -16.08166 -15.89641 -15.71767 -15.38130 -14.94494 -14.43695 -14.26357 -14.01796 -13.66467 -13.56562 -13.29892 -12.72548 -12.40579 -12.30477 -12.01891 -11.87011 -11.74887 -11.69214 -11.43408 -10.82952 -10.81632 -10.65876 -10.54457 -10.50253 -9.77385 -9.70530 -9.32832 -9.12326 -9.04016 -8.34950 -8.32625 -5.98621 -3.99981 0.41872 1.07748 2.26884 2.69768 2.74025 3.06983 3.35120 3.40896 3.46051 3.53369 4.46062 4.49044 4.49262 4.77188 4.84661 4.88609 5.05485 5.23039 5.24269 5.35920 5.37738 5.58588 5.60605 5.61352 5.70799 5.94763 6.04992 6.10315 6.17640 6.21996 6.26801 6.67350 6.71567 6.87754 7.12344 7.30196 7.68876 7.69829 7.80813 8.01711 8.19018 8.45513 9.07040 9.64241 11.12892 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.020676 B = 0.002968 C = 0.002632 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1353.897150 B = 9430.357285 C =10635.934033 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.079 4.079 3 C -0.118 4.118 4 C -0.078 4.078 5 C -0.118 4.118 6 C 0.525 3.475 7 O -0.504 6.504 8 O -0.515 6.515 9 C -0.055 4.055 10 C 0.141 3.859 11 N -0.680 5.680 12 C 0.510 3.490 13 O -0.511 6.511 14 C -0.136 4.136 15 C -0.097 4.097 16 C 0.021 3.979 17 C -0.518 4.518 18 H 0.056 0.944 19 C 0.056 3.944 20 N -0.898 5.898 21 Si 0.892 3.108 22 H -0.280 1.280 23 H -0.287 1.287 24 H -0.273 1.273 25 H 0.077 0.923 26 H 0.075 0.925 27 H 0.071 0.929 28 H 0.134 0.866 29 H 0.138 0.862 30 H 0.414 0.586 31 H 0.158 0.842 32 H 0.412 0.588 33 H 0.093 0.907 34 H 0.093 0.907 35 H 0.056 0.944 36 H 0.056 0.944 37 H 0.016 0.984 38 H 0.016 0.984 39 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.164 26.075 7.905 27.272 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.082 4.082 3 C -0.137 4.137 4 C -0.097 4.097 5 C -0.120 4.120 6 C 0.369 3.631 7 O -0.393 6.393 8 O -0.327 6.327 9 C -0.076 4.076 10 C 0.046 3.954 11 N -0.327 5.327 12 C 0.300 3.700 13 O -0.385 6.385 14 C -0.176 4.176 15 C -0.135 4.135 16 C -0.016 4.016 17 C -0.557 4.557 18 H 0.075 0.925 19 C -0.145 4.145 20 N -0.538 5.538 21 Si 0.720 3.280 22 H -0.207 1.207 23 H -0.213 1.213 24 H -0.198 1.198 25 H 0.095 0.905 26 H 0.094 0.906 27 H 0.090 0.910 28 H 0.152 0.848 29 H 0.155 0.845 30 H 0.272 0.728 31 H 0.175 0.825 32 H 0.249 0.751 33 H 0.111 0.889 34 H 0.111 0.889 35 H 0.075 0.925 36 H 0.075 0.925 37 H 0.035 0.965 38 H 0.034 0.966 39 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 1.537 25.603 7.491 26.721 hybrid contribution 0.673 -0.801 -0.286 1.084 sum 2.210 24.802 7.205 25.922 Atomic orbital electron populations 1.20845 0.90348 1.03762 1.02823 1.20031 0.96637 0.91787 0.99715 1.20817 0.93705 0.97245 1.01887 1.21364 0.94188 0.97343 0.96832 1.18843 0.88962 0.94520 1.09662 1.20867 0.88859 0.80963 0.72383 1.90942 1.69847 1.33069 1.45399 1.84532 1.26887 1.35135 1.86123 1.21475 0.92750 0.98737 0.94594 1.17438 0.90741 0.85624 1.01608 1.43798 1.26099 1.09432 1.53369 1.21619 0.87116 0.84950 0.76336 1.90716 1.20752 1.82586 1.44401 1.21886 0.99982 0.91827 1.03883 1.21489 0.98708 0.94821 0.98475 1.19124 0.95038 0.90297 0.97144 1.21268 1.03705 0.97150 1.33549 0.92543 1.25014 0.95002 0.98491 0.95982 1.69963 1.16424 1.21434 1.45949 0.86587 0.79733 0.81415 0.80264 1.20652 1.21258 1.19812 0.90478 0.90647 0.91009 0.84797 0.84454 0.72782 0.82487 0.75103 0.88859 0.88861 0.92544 0.92488 0.96546 0.96555 0.93057 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.75 9.46 36.01 0.34 -0.41 16 2 C -0.08 -0.72 5.90 -104.34 -0.62 -1.34 16 3 C -0.12 -0.95 9.67 -39.67 -0.38 -1.34 16 4 C -0.08 -0.72 9.61 -39.15 -0.38 -1.10 16 5 C -0.12 -1.45 5.87 -105.00 -0.62 -2.07 16 6 C 0.53 6.60 8.27 34.62 0.29 6.88 16 7 O -0.50 -8.22 17.13 -19.24 -0.33 -8.55 16 8 O -0.51 -4.33 12.68 -40.51 -0.51 -4.85 16 9 C -0.06 -0.78 8.24 -38.97 -0.32 -1.11 16 10 C 0.14 1.70 6.28 -83.74 -0.53 1.17 16 11 N -0.68 -7.82 4.74 -9.90 -0.05 -7.87 16 12 C 0.51 7.89 7.67 -10.99 -0.08 7.80 16 13 O -0.51 -10.01 13.40 5.55 0.07 -9.94 16 14 C -0.14 -2.12 5.70 -27.88 -0.16 -2.28 16 15 C -0.10 -2.05 4.44 -26.72 -0.12 -2.17 16 16 C 0.02 0.54 4.97 -27.88 -0.14 0.40 16 17 C -0.52 -14.99 9.11 -34.44 -0.31 -15.31 16 18 H 0.06 1.62 7.74 -52.48 -0.41 1.21 16 19 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 20 N -0.90 -27.03 13.29 55.43 0.74 -26.29 16 21 Si 0.89 22.10 29.54 -169.99 -5.02 17.08 16 22 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 23 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 24 H -0.27 -6.69 7.11 56.52 0.40 -6.28 16 25 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 26 H 0.07 0.38 8.09 -51.93 -0.42 -0.04 16 27 H 0.07 0.46 7.15 -51.93 -0.37 0.09 16 28 H 0.13 0.69 8.06 -52.48 -0.42 0.27 16 29 H 0.14 0.98 7.61 -52.48 -0.40 0.58 16 30 H 0.41 1.67 9.11 45.56 0.42 2.09 16 31 H 0.16 2.71 5.79 -52.49 -0.30 2.41 16 32 H 0.41 3.27 7.84 -40.82 -0.32 2.95 16 33 H 0.09 1.29 8.14 -51.93 -0.42 0.86 16 34 H 0.09 1.28 8.14 -51.92 -0.42 0.86 16 35 H 0.06 1.25 8.10 -51.93 -0.42 0.83 16 36 H 0.06 1.26 8.10 -51.93 -0.42 0.84 16 37 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 38 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 39 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 LS Contribution 339.35 15.07 5.11 5.11 Total: -1.00 -36.58 339.35 -7.43 -44.01 By element: Atomic # 1 Polarization: 4.94 SS G_CDS: -4.32 Total: 0.62 kcal Atomic # 6 Polarization: -6.20 SS G_CDS: -3.12 Total: -9.33 kcal Atomic # 7 Polarization: -34.85 SS G_CDS: 0.69 Total: -34.16 kcal Atomic # 8 Polarization: -22.57 SS G_CDS: -0.77 Total: -23.34 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -5.02 Total: 17.08 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -36.58 -7.43 -44.01 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001607739254.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.929 kcal (2) G-P(sol) polarization free energy of solvation -36.582 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.510 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.428 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.010 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.938 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds