Wall clock time and date at job start Tue Mar 31 2020 06:30:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46504 * 109.47009 * 2 1 4 4 C 1.34776 * 119.99789 * 61.81169 * 3 2 1 5 5 O 1.21277 * 120.00584 * 359.97438 * 4 3 2 6 6 C 1.50705 * 119.99595 * 180.02562 * 4 3 2 7 7 C 1.53003 * 109.47036 * 180.02562 * 6 4 3 8 8 C 1.50700 * 109.47253 * 179.97438 * 7 6 4 9 9 H 1.08004 * 119.99533 * 0.02562 * 8 7 6 10 10 C 1.37867 * 120.00200 * 179.97438 * 8 7 6 11 11 N 1.31518 * 120.00062 * 0.02562 * 10 8 7 12 12 Si 1.86799 * 120.00272 * 180.02562 * 10 8 7 13 13 H 1.48500 * 109.46803 * 0.02562 * 12 10 8 14 14 H 1.48502 * 109.47194 * 120.00342 * 12 10 8 15 15 H 1.48503 * 109.47328 * 240.00223 * 12 10 8 16 16 C 1.50706 * 109.46962 * 119.99836 * 2 1 3 17 17 O 1.20823 * 119.99926 * 25.00039 * 16 2 1 18 18 O 1.34227 * 119.99916 * 205.00093 * 16 2 1 19 19 C 1.50695 * 109.47404 * 240.00033 * 2 1 3 20 20 C 1.38238 * 119.99725 * 274.17208 * 19 2 1 21 21 C 1.38239 * 120.00084 * 179.81231 * 20 19 2 22 22 C 1.38241 * 119.99629 * 0.39080 * 21 20 19 23 23 C 1.38228 * 120.00027 * 359.86064 * 22 21 20 24 24 C 1.38228 * 120.00367 * 94.44405 * 19 2 1 25 25 H 1.09000 * 109.47499 * 300.00231 * 1 2 3 26 26 H 1.09001 * 109.47040 * 60.00439 * 1 2 3 27 27 H 1.09002 * 109.47120 * 180.02562 * 1 2 3 28 28 H 0.97000 * 119.99642 * 241.80299 * 3 2 1 29 29 H 1.09003 * 109.46834 * 299.99462 * 6 4 3 30 30 H 1.08993 * 109.47278 * 59.99421 * 6 4 3 31 31 H 1.08999 * 109.46416 * 299.99633 * 7 6 4 32 32 H 1.08994 * 109.47049 * 59.99535 * 7 6 4 33 33 H 0.97000 * 120.00478 * 179.97438 * 11 10 8 34 34 H 0.96702 * 116.99908 * 179.97438 * 18 16 2 35 35 H 1.07999 * 120.00414 * 359.97438 * 20 19 2 36 36 H 1.07998 * 120.00552 * 180.22581 * 21 20 19 37 37 H 1.08000 * 119.99749 * 179.83838 * 22 21 20 38 38 H 1.08007 * 120.00377 * 179.97438 * 23 22 21 39 39 H 1.08003 * 120.00241 * 359.97438 * 24 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 1.7230 2.2003 1.0288 5 8 1.0528 1.7942 1.9543 6 6 2.2249 3.6214 1.0285 7 6 1.7531 4.3291 2.3003 8 6 2.2555 5.7500 2.3003 9 1 2.8513 6.1120 1.4754 10 6 1.9536 6.5878 3.3527 11 7 1.2276 6.1471 4.3569 12 14 2.5757 8.3492 3.3524 13 1 3.3632 8.5958 2.1178 14 1 1.4210 9.2820 3.3971 15 1 3.4369 8.5703 4.5418 16 6 2.0323 -0.7104 1.2305 17 8 1.3395 -1.5362 1.7764 18 8 3.2493 -0.4257 1.7200 19 6 2.0323 -0.7104 -1.2304 20 6 2.1806 -2.0847 -1.2228 21 6 2.6378 -2.7369 -2.3528 22 6 2.9544 -2.0137 -3.4876 23 6 2.8110 -0.6389 -3.4934 24 6 2.3502 0.0128 -2.3647 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 2.5542 1.7062 -0.7404 29 1 3.3144 3.6219 0.9958 30 1 1.8350 4.1442 0.1552 31 1 0.6636 4.3286 2.3334 32 1 2.1434 3.8061 3.1732 33 1 1.0155 6.7364 5.0975 34 1 3.5277 -0.9068 2.5113 35 1 1.9369 -2.6494 -0.3351 36 1 2.7502 -3.8110 -2.3481 37 1 3.3140 -2.5229 -4.3695 38 1 3.0587 -0.0738 -4.3799 39 1 2.2382 1.0870 -2.3694 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001609761475.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:30:37 Heat of formation + Delta-G solvation = -105.239197 kcal Electronic energy + Delta-G solvation = -23205.911607 eV Core-core repulsion = 19692.359038 eV Total energy + Delta-G solvation = -3513.552569 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.130 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.21964 -39.24219 -38.90792 -36.14831 -35.49563 -33.48428 -32.06625 -31.21889 -30.75954 -29.39695 -25.97993 -25.18495 -23.40434 -22.59755 -21.79874 -20.20747 -19.66510 -18.14288 -17.80842 -17.00636 -16.66138 -15.98021 -15.53507 -15.27546 -14.91454 -14.85868 -14.50441 -14.33624 -13.71543 -13.63017 -13.41843 -13.03211 -12.79730 -12.42239 -12.24289 -12.05831 -12.01304 -11.53335 -11.45979 -11.33053 -11.17028 -10.95756 -10.59772 -10.57713 -9.98544 -9.69278 -9.31484 -9.27404 -9.19229 -9.04317 -8.94709 -8.33349 -5.97012 -4.01547 0.92698 1.05079 2.18250 2.85848 3.17323 3.27447 3.32170 3.39495 3.42547 3.48156 4.17510 4.46708 4.56966 4.66431 4.79737 4.85234 5.12435 5.16371 5.24452 5.38144 5.46796 5.55316 5.65547 5.71764 5.73783 6.07252 6.10181 6.16828 6.17585 6.18274 6.26868 6.46913 6.54645 6.62144 6.84611 7.68953 7.73759 7.84154 7.93384 8.05574 8.36267 8.63361 9.06886 9.62215 11.13903 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.025791 B = 0.003590 C = 0.003327 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1085.382511 B = 7797.880964 C = 8415.168902 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.235 3.765 3 N -0.731 5.731 4 C 0.515 3.485 5 O -0.525 6.525 6 C -0.127 4.127 7 C 0.037 3.963 8 C -0.526 4.526 9 H 0.057 0.943 10 C 0.058 3.942 11 N -0.889 5.889 12 Si 0.893 3.107 13 H -0.273 1.273 14 H -0.284 1.284 15 H -0.284 1.284 16 C 0.493 3.507 17 O -0.510 6.510 18 O -0.504 6.504 19 C -0.085 4.085 20 C -0.110 4.110 21 C -0.113 4.113 22 C -0.116 4.116 23 C -0.113 4.113 24 C -0.105 4.105 25 H 0.090 0.910 26 H 0.074 0.926 27 H 0.075 0.925 28 H 0.403 0.597 29 H 0.083 0.917 30 H 0.082 0.918 31 H 0.024 0.976 32 H 0.024 0.976 33 H 0.260 0.740 34 H 0.408 0.592 35 H 0.126 0.874 36 H 0.126 0.874 37 H 0.125 0.875 38 H 0.128 0.872 39 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.358 -16.819 -16.878 24.223 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.146 3.854 3 N -0.389 5.389 4 C 0.305 3.695 5 O -0.399 6.399 6 C -0.167 4.167 7 C 0.000 4.000 8 C -0.565 4.565 9 H 0.075 0.925 10 C -0.144 4.144 11 N -0.528 5.528 12 Si 0.721 3.279 13 H -0.197 1.197 14 H -0.210 1.210 15 H -0.210 1.210 16 C 0.333 3.667 17 O -0.397 6.397 18 O -0.314 6.314 19 C -0.086 4.086 20 C -0.128 4.128 21 C -0.131 4.131 22 C -0.134 4.134 23 C -0.131 4.131 24 C -0.123 4.123 25 H 0.109 0.891 26 H 0.093 0.907 27 H 0.094 0.906 28 H 0.241 0.759 29 H 0.101 0.899 30 H 0.100 0.900 31 H 0.042 0.958 32 H 0.042 0.958 33 H 0.070 0.930 34 H 0.266 0.734 35 H 0.144 0.856 36 H 0.144 0.856 37 H 0.143 0.857 38 H 0.146 0.854 39 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 3.472 -17.052 -16.199 23.775 hybrid contribution 0.779 0.756 0.301 1.127 sum 4.251 -16.296 -15.898 23.160 Atomic orbital electron populations 1.22150 0.89847 1.04000 1.04818 1.18800 0.95860 0.82661 0.88047 1.46472 1.57091 1.09675 1.25665 1.21710 0.78710 0.88717 0.80403 1.90679 1.37767 1.76622 1.34849 1.21882 1.01634 0.88856 1.04344 1.18909 0.97335 0.93811 0.89992 1.21241 1.33289 0.96404 1.05548 0.92511 1.25026 0.95191 0.98607 0.95580 1.70008 1.37835 1.35878 1.09063 0.86535 0.78590 0.84886 0.77938 1.19729 1.21031 1.21029 1.23379 0.78781 0.79694 0.84814 1.90688 1.56789 1.33354 1.58893 1.84546 1.34484 1.65657 1.46721 1.19453 1.01051 0.94079 0.93998 1.21095 0.98994 0.93431 0.99284 1.21129 0.98936 1.00116 0.92882 1.21244 0.99536 0.94354 0.98270 1.21159 0.99145 0.94678 0.98095 1.20932 0.98807 1.00176 0.92411 0.89075 0.90749 0.90580 0.75934 0.89910 0.89992 0.95763 0.95791 0.92995 0.73369 0.85627 0.85599 0.85728 0.85374 0.85232 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.12 7.94 37.16 0.30 -1.83 16 2 C 0.23 3.26 0.86 -134.12 -0.12 3.14 16 3 N -0.73 -10.29 4.69 -49.77 -0.23 -10.52 16 4 C 0.52 9.66 7.10 -10.98 -0.08 9.58 16 5 O -0.52 -11.99 13.23 5.56 0.07 -11.92 16 6 C -0.13 -2.51 5.64 -27.88 -0.16 -2.67 16 7 C 0.04 0.98 4.26 -27.88 -0.12 0.86 16 8 C -0.53 -14.77 9.11 -34.44 -0.31 -15.08 16 9 H 0.06 1.50 7.74 -52.48 -0.41 1.09 16 10 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 11 N -0.89 -27.33 13.29 55.43 0.74 -26.59 16 12 Si 0.89 21.54 29.54 -169.99 -5.02 16.52 16 13 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 14 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 15 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 16 C 0.49 7.78 4.48 36.01 0.16 7.95 16 17 O -0.51 -9.00 16.26 -18.75 -0.30 -9.30 16 18 O -0.50 -7.18 12.97 -39.25 -0.51 -7.69 16 19 C -0.09 -0.95 4.81 -104.63 -0.50 -1.46 16 20 C -0.11 -1.16 9.15 -39.58 -0.36 -1.52 16 21 C -0.11 -0.95 10.05 -39.58 -0.40 -1.35 16 22 C -0.12 -0.87 10.05 -39.58 -0.40 -1.27 16 23 C -0.11 -0.87 10.05 -39.58 -0.40 -1.27 16 24 C -0.11 -0.96 9.03 -39.58 -0.36 -1.32 16 25 H 0.09 1.58 6.30 -51.93 -0.33 1.26 16 26 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 27 H 0.08 1.00 7.87 -51.93 -0.41 0.59 16 28 H 0.40 4.43 6.36 -40.82 -0.26 4.17 16 29 H 0.08 1.50 8.14 -51.93 -0.42 1.08 16 30 H 0.08 1.44 8.14 -51.93 -0.42 1.02 16 31 H 0.02 0.70 8.10 -51.93 -0.42 0.28 16 32 H 0.02 0.70 8.10 -51.93 -0.42 0.28 16 33 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 34 H 0.41 4.14 9.10 45.56 0.41 4.56 16 35 H 0.13 1.41 6.75 -52.49 -0.35 1.05 16 36 H 0.13 0.79 8.06 -52.49 -0.42 0.37 16 37 H 0.12 0.64 8.06 -52.49 -0.42 0.21 16 38 H 0.13 0.69 8.06 -52.48 -0.42 0.27 16 39 H 0.13 0.99 6.41 -52.48 -0.34 0.66 16 LS Contribution 332.92 15.07 5.02 5.02 Total: -1.00 -36.11 332.92 -7.27 -43.38 By element: Atomic # 1 Polarization: 9.96 SS G_CDS: -4.19 Total: 5.77 kcal Atomic # 6 Polarization: -1.82 SS G_CDS: -2.84 Total: -4.66 kcal Atomic # 7 Polarization: -37.61 SS G_CDS: 0.50 Total: -37.11 kcal Atomic # 8 Polarization: -28.17 SS G_CDS: -0.74 Total: -28.92 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -36.11 -7.27 -43.38 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001609761475.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.860 kcal (2) G-P(sol) polarization free energy of solvation -36.108 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.968 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.272 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.380 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.239 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds