Wall clock time and date at job start Tue Mar 31 2020 06:30:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46504 * 109.47009 * 2 1 4 4 C 1.34776 * 119.99789 * 61.81169 * 3 2 1 5 5 O 1.21277 * 120.00584 * 359.97438 * 4 3 2 6 6 C 1.50705 * 119.99595 * 180.02562 * 4 3 2 7 7 C 1.53003 * 109.47036 * 180.02562 * 6 4 3 8 8 C 1.50700 * 109.47253 * 179.97438 * 7 6 4 9 9 H 1.08004 * 119.99533 * 0.02562 * 8 7 6 10 10 C 1.37867 * 120.00200 * 179.97438 * 8 7 6 11 11 N 1.31518 * 120.00062 * 0.02562 * 10 8 7 12 12 Si 1.86799 * 120.00272 * 180.02562 * 10 8 7 13 13 H 1.48500 * 109.46803 * 0.02562 * 12 10 8 14 14 H 1.48502 * 109.47194 * 120.00342 * 12 10 8 15 15 H 1.48503 * 109.47328 * 240.00223 * 12 10 8 16 16 C 1.50706 * 109.46962 * 119.99836 * 2 1 3 17 17 O 1.20823 * 119.99926 * 25.00039 * 16 2 1 18 18 O 1.34227 * 119.99916 * 205.00093 * 16 2 1 19 19 C 1.50695 * 109.47404 * 240.00033 * 2 1 3 20 20 C 1.38238 * 119.99725 * 274.17208 * 19 2 1 21 21 C 1.38239 * 120.00084 * 179.81231 * 20 19 2 22 22 C 1.38241 * 119.99629 * 0.39080 * 21 20 19 23 23 C 1.38228 * 120.00027 * 359.86064 * 22 21 20 24 24 C 1.38228 * 120.00367 * 94.44405 * 19 2 1 25 25 H 1.09000 * 109.47499 * 300.00231 * 1 2 3 26 26 H 1.09001 * 109.47040 * 60.00439 * 1 2 3 27 27 H 1.09002 * 109.47120 * 180.02562 * 1 2 3 28 28 H 0.97000 * 119.99642 * 241.80299 * 3 2 1 29 29 H 1.09003 * 109.46834 * 299.99462 * 6 4 3 30 30 H 1.08993 * 109.47278 * 59.99421 * 6 4 3 31 31 H 1.08999 * 109.46416 * 299.99633 * 7 6 4 32 32 H 1.08994 * 109.47049 * 59.99535 * 7 6 4 33 33 H 0.97000 * 120.00478 * 179.97438 * 11 10 8 34 34 H 0.96702 * 116.99908 * 179.97438 * 18 16 2 35 35 H 1.07999 * 120.00414 * 359.97438 * 20 19 2 36 36 H 1.07998 * 120.00552 * 180.22581 * 21 20 19 37 37 H 1.08000 * 119.99749 * 179.83838 * 22 21 20 38 38 H 1.08007 * 120.00377 * 179.97438 * 23 22 21 39 39 H 1.08003 * 120.00241 * 359.97438 * 24 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 1.7230 2.2003 1.0288 5 8 1.0528 1.7942 1.9543 6 6 2.2249 3.6214 1.0285 7 6 1.7531 4.3291 2.3003 8 6 2.2555 5.7500 2.3003 9 1 2.8513 6.1120 1.4754 10 6 1.9536 6.5878 3.3527 11 7 1.2276 6.1471 4.3569 12 14 2.5757 8.3492 3.3524 13 1 3.3632 8.5958 2.1178 14 1 1.4210 9.2820 3.3971 15 1 3.4369 8.5703 4.5418 16 6 2.0323 -0.7104 1.2305 17 8 1.3395 -1.5362 1.7764 18 8 3.2493 -0.4257 1.7200 19 6 2.0323 -0.7104 -1.2304 20 6 2.1806 -2.0847 -1.2228 21 6 2.6378 -2.7369 -2.3528 22 6 2.9544 -2.0137 -3.4876 23 6 2.8110 -0.6389 -3.4934 24 6 2.3502 0.0128 -2.3647 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 2.5542 1.7062 -0.7404 29 1 3.3144 3.6219 0.9958 30 1 1.8350 4.1442 0.1552 31 1 0.6636 4.3286 2.3334 32 1 2.1434 3.8061 3.1732 33 1 1.0155 6.7364 5.0975 34 1 3.5277 -0.9068 2.5113 35 1 1.9369 -2.6494 -0.3351 36 1 2.7502 -3.8110 -2.3481 37 1 3.3140 -2.5229 -4.3695 38 1 3.0587 -0.0738 -4.3799 39 1 2.2382 1.0870 -2.3694 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001609761475.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:30:36 Heat of formation + Delta-G solvation = -130.661826 kcal Electronic energy + Delta-G solvation = -23207.014015 eV Core-core repulsion = 19692.359038 eV Total energy + Delta-G solvation = -3514.654977 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.130 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -42.37381 -40.44167 -39.99549 -37.34700 -36.72981 -35.54345 -33.48381 -32.46516 -31.80263 -30.41439 -27.78249 -26.49056 -24.50362 -23.53596 -23.22269 -21.46221 -20.97871 -19.37042 -19.09060 -18.40185 -18.16222 -17.17439 -16.75255 -16.51766 -16.43452 -16.26013 -15.63228 -15.41231 -15.01971 -14.76526 -14.38307 -14.24360 -14.18641 -13.94472 -13.49601 -13.31445 -13.22238 -13.11898 -12.83843 -12.66527 -12.44811 -12.38300 -12.05180 -11.91497 -11.72224 -11.62578 -11.26667 -10.77044 -10.57756 -10.42651 -9.91219 -9.80866 -8.16800 -6.30546 0.23031 0.40470 0.96325 1.43665 1.44794 1.55242 1.58137 1.87597 2.08922 2.44590 2.77587 3.16761 3.24236 3.70975 3.91654 3.95942 4.04257 4.18846 4.26206 4.46483 4.51753 4.52581 4.57257 4.58003 4.67281 4.89593 5.02177 5.05036 5.07240 5.17740 5.42356 5.47135 5.49266 5.52699 5.56324 5.64777 5.86923 5.99595 6.18711 6.44556 6.78698 6.88297 7.21154 7.39882 8.96000 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.025791 B = 0.003590 C = 0.003327 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1085.382511 B = 7797.880964 C = 8415.168902 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.235 3.765 3 N -0.705 5.705 4 C 0.519 3.481 5 O -0.574 6.574 6 C -0.116 4.116 7 C 0.042 3.958 8 C -0.539 4.539 9 H 0.078 0.922 10 C -0.008 4.008 11 N -0.939 5.939 12 Si 0.973 3.027 13 H -0.250 1.250 14 H -0.282 1.282 15 H -0.283 1.283 16 C 0.487 3.513 17 O -0.539 6.539 18 O -0.507 6.507 19 C -0.101 4.101 20 C -0.127 4.127 21 C -0.115 4.115 22 C -0.111 4.111 23 C -0.109 4.109 24 C -0.109 4.109 25 H 0.052 0.948 26 H 0.096 0.904 27 H 0.079 0.921 28 H 0.422 0.578 29 H 0.107 0.893 30 H 0.112 0.888 31 H -0.016 1.016 32 H -0.019 1.019 33 H 0.262 0.738 34 H 0.422 0.578 35 H 0.108 0.892 36 H 0.145 0.855 37 H 0.155 0.845 38 H 0.158 0.842 39 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.341 -16.188 -20.562 26.927 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.147 3.853 3 N -0.363 5.363 4 C 0.308 3.692 5 O -0.453 6.453 6 C -0.156 4.156 7 C 0.005 3.995 8 C -0.577 4.577 9 H 0.096 0.904 10 C -0.205 4.205 11 N -0.579 5.579 12 Si 0.797 3.203 13 H -0.174 1.174 14 H -0.208 1.208 15 H -0.208 1.208 16 C 0.329 3.671 17 O -0.428 6.428 18 O -0.319 6.319 19 C -0.102 4.102 20 C -0.145 4.145 21 C -0.133 4.133 22 C -0.128 4.128 23 C -0.127 4.127 24 C -0.127 4.127 25 H 0.071 0.929 26 H 0.115 0.885 27 H 0.098 0.902 28 H 0.263 0.737 29 H 0.125 0.875 30 H 0.130 0.870 31 H 0.002 0.998 32 H -0.001 1.001 33 H 0.070 0.930 34 H 0.283 0.717 35 H 0.126 0.874 36 H 0.162 0.838 37 H 0.172 0.828 38 H 0.176 0.824 39 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 5.504 -16.435 -19.946 26.424 hybrid contribution 0.185 0.451 1.412 1.494 sum 5.689 -15.984 -18.534 25.127 Atomic orbital electron populations 1.22100 0.90443 1.04015 1.03934 1.18862 0.95559 0.82054 0.88821 1.46091 1.56086 1.09434 1.24708 1.21484 0.78168 0.88863 0.80696 1.90682 1.40095 1.77431 1.37064 1.21652 1.02998 0.89190 1.01744 1.18690 0.94652 0.94258 0.91931 1.21746 1.33000 0.96930 1.06042 0.90361 1.26135 0.95288 1.04024 0.95096 1.70190 1.39645 1.37949 1.10115 0.85280 0.78041 0.78250 0.78703 1.17377 1.20768 1.20847 1.23863 0.78763 0.79353 0.85133 1.90663 1.57529 1.34768 1.59836 1.84506 1.33935 1.65850 1.47595 1.19272 1.03255 0.94258 0.93390 1.21080 1.00332 0.93352 0.99774 1.21389 0.98238 1.01257 0.92447 1.21651 0.98000 0.94520 0.98659 1.21536 0.97749 0.95042 0.98367 1.21138 0.98593 1.00925 0.92086 0.92852 0.88510 0.90191 0.73697 0.87511 0.86980 0.99797 1.00106 0.92962 0.71667 0.87357 0.83756 0.82778 0.82450 0.83795 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.26 7.94 71.98 0.57 -3.69 16 2 C 0.24 6.50 0.86 2.11 0.00 6.50 16 3 N -0.70 -19.11 4.69 -429.75 -2.01 -21.12 16 4 C 0.52 19.59 7.10 87.66 0.62 20.21 16 5 O -0.57 -27.65 13.23 -3.02 -0.04 -27.69 16 6 C -0.12 -4.50 5.64 29.85 0.17 -4.33 16 7 C 0.04 2.33 4.26 29.85 0.13 2.45 16 8 C -0.54 -30.24 9.11 25.60 0.23 -30.01 16 9 H 0.08 3.96 7.74 -2.91 -0.02 3.94 16 10 C -0.01 -0.48 5.46 84.65 0.46 -0.01 16 11 N -0.94 -59.59 13.29 21.44 0.28 -59.30 16 12 Si 0.97 44.01 29.54 68.60 2.03 46.03 16 13 H -0.25 -10.34 7.11 99.48 0.71 -9.63 16 14 H -0.28 -12.54 7.11 99.48 0.71 -11.84 16 15 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 16 C 0.49 15.88 4.48 71.24 0.32 16.20 16 17 O -0.54 -20.04 16.26 21.97 0.36 -19.68 16 18 O -0.51 -14.72 12.97 -51.39 -0.67 -15.38 16 19 C -0.10 -2.12 4.81 -19.87 -0.10 -2.22 16 20 C -0.13 -2.58 9.15 22.27 0.20 -2.37 16 21 C -0.12 -1.67 10.05 22.27 0.22 -1.44 16 22 C -0.11 -1.21 10.05 22.27 0.22 -0.99 16 23 C -0.11 -1.22 10.05 22.27 0.22 -1.00 16 24 C -0.11 -1.66 9.03 22.27 0.20 -1.46 16 25 H 0.05 1.96 6.30 -2.39 -0.02 1.95 16 26 H 0.10 2.27 8.14 -2.39 -0.02 2.25 16 27 H 0.08 2.20 7.87 -2.39 -0.02 2.18 16 28 H 0.42 8.14 6.36 -92.71 -0.59 7.55 16 29 H 0.11 3.63 8.14 -2.39 -0.02 3.61 16 30 H 0.11 3.67 8.14 -2.39 -0.02 3.65 16 31 H -0.02 -1.02 8.10 -2.39 -0.02 -1.04 16 32 H -0.02 -1.22 8.10 -2.39 -0.02 -1.24 16 33 H 0.26 15.56 8.31 -92.71 -0.77 14.79 16 34 H 0.42 8.92 9.10 -74.06 -0.67 8.25 16 35 H 0.11 2.52 6.75 -2.91 -0.02 2.50 16 36 H 0.14 1.46 8.06 -2.91 -0.02 1.44 16 37 H 0.15 0.79 8.06 -2.91 -0.02 0.77 16 38 H 0.16 0.85 8.06 -2.91 -0.02 0.83 16 39 H 0.14 1.67 6.41 -2.91 -0.02 1.65 16 Total: -1.00 -82.89 332.92 3.26 -79.63 By element: Atomic # 1 Polarization: 19.86 SS G_CDS: -0.18 Total: 19.68 kcal Atomic # 6 Polarization: -5.64 SS G_CDS: 3.49 Total: -2.16 kcal Atomic # 7 Polarization: -78.70 SS G_CDS: -1.73 Total: -80.43 kcal Atomic # 8 Polarization: -62.41 SS G_CDS: -0.35 Total: -62.76 kcal Atomic # 14 Polarization: 44.01 SS G_CDS: 2.03 Total: 46.03 kcal Total: -82.89 3.26 -79.63 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001609761475.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.034 kcal (2) G-P(sol) polarization free energy of solvation -82.886 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.920 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.258 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.628 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.662 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds