Wall clock time and date at job start Tue Mar 31 2020 06:02:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38090 * 119.84826 * 2 1 4 4 C 1.39714 * 120.14246 * 180.30197 * 3 2 1 5 5 C 1.47733 * 120.08177 * 179.71645 * 4 3 2 6 6 O 1.21468 * 120.00425 * 359.72600 * 5 4 3 7 7 O 1.34711 * 120.00241 * 179.72609 * 5 4 3 8 8 C 1.39387 * 119.83805 * 359.44127 * 4 3 2 9 9 C 1.39285 * 119.70584 * 0.27933 * 8 4 3 10 10 C 1.47859 * 120.07461 * 179.97438 * 9 8 4 11 11 O 1.21553 * 120.00227 * 180.02562 * 10 9 8 12 12 N 1.34778 * 120.00032 * 359.97438 * 10 9 8 13 13 C 1.46492 * 120.00116 * 180.02562 * 12 10 9 14 14 C 1.53004 * 109.47352 * 179.97438 * 13 12 10 15 15 C 1.53000 * 109.47476 * 179.97438 * 14 13 12 16 16 C 1.50694 * 109.47101 * 179.97438 * 15 14 13 17 17 H 1.07996 * 120.00416 * 0.02562 * 16 15 14 18 18 C 1.37883 * 119.99896 * 179.97438 * 16 15 14 19 19 N 1.31508 * 119.99979 * 359.97438 * 18 16 15 20 20 Si 1.86796 * 119.99814 * 180.02562 * 18 16 15 21 21 H 1.48497 * 109.47479 * 60.00079 * 20 18 16 22 22 H 1.48506 * 109.47223 * 180.02562 * 20 18 16 23 23 H 1.48503 * 109.47196 * 299.99510 * 20 18 16 24 24 C 1.38068 * 119.85151 * 179.74425 * 2 1 3 25 25 H 1.09000 * 109.46892 * 270.25530 * 1 2 3 26 26 H 1.08991 * 109.47124 * 30.25328 * 1 2 3 27 27 H 1.09004 * 109.46987 * 150.25999 * 1 2 3 28 28 H 1.08005 * 119.92816 * 0.04002 * 3 2 1 29 29 H 0.96700 * 117.00324 * 180.02562 * 7 5 4 30 30 H 1.07997 * 120.15057 * 180.25151 * 8 4 3 31 31 H 0.97007 * 119.99913 * 359.97438 * 12 10 9 32 32 H 1.08996 * 109.46996 * 299.99957 * 13 12 10 33 33 H 1.08999 * 109.47502 * 59.99945 * 13 12 10 34 34 H 1.08996 * 109.47038 * 299.99935 * 14 13 12 35 35 H 1.08999 * 109.46859 * 59.99554 * 14 13 12 36 36 H 1.09004 * 109.46824 * 299.99742 * 15 14 13 37 37 H 1.08998 * 109.46940 * 59.99669 * 15 14 13 38 38 H 0.97000 * 120.00404 * 179.97438 * 19 18 16 39 39 H 1.07998 * 119.92097 * 359.95664 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1943 1.1977 0.0000 4 6 3.5914 1.2049 -0.0064 5 6 4.3253 2.4870 -0.0127 6 8 3.7141 3.5367 -0.0174 7 8 5.6724 2.4921 -0.0132 8 6 4.2912 -0.0006 -0.0009 9 6 3.5914 -1.2049 0.0049 10 6 4.3254 -2.4884 0.0101 11 8 3.7134 -3.5386 0.0148 12 7 5.6732 -2.4939 0.0087 13 6 6.4005 -3.7655 0.0133 14 6 7.9059 -3.4922 0.0099 15 6 8.6655 -4.8203 0.0153 16 6 10.1482 -4.5509 0.0113 17 1 10.5123 -3.5342 0.0059 18 6 11.0399 -5.6026 0.0156 19 7 10.5965 -6.8406 0.0238 20 14 12.8778 -5.2687 0.0114 21 1 13.2414 -4.4851 1.2192 22 1 13.6151 -6.5578 0.0166 23 1 13.2380 -4.4979 -1.2058 24 6 2.1943 -1.1975 0.0053 25 1 -0.3633 0.0046 1.0277 26 1 -0.3633 0.8876 -0.5177 27 1 -0.3633 -0.8923 -0.5098 28 1 1.6506 2.1310 0.0007 29 1 6.1082 3.3553 -0.0171 30 1 5.3711 -0.0009 -0.0017 31 1 6.1616 -1.6558 0.0039 32 1 6.1358 -4.3322 0.9059 33 1 6.1339 -4.3398 -0.8739 34 1 8.1702 -2.9257 -0.8830 35 1 8.1728 -2.9177 0.8969 36 1 8.4011 -5.3864 0.9085 37 1 8.3985 -5.3951 -0.8715 38 1 11.2237 -7.5805 0.0264 39 1 1.6506 -2.1306 0.0102 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001611133238.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:02:05 Heat of formation + Delta-G solvation = -125.303354 kcal Electronic energy + Delta-G solvation = -21701.030004 eV Core-core repulsion = 18186.607388 eV Total energy + Delta-G solvation = -3514.422616 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.130 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.94974 -39.97063 -38.52362 -36.45734 -35.52396 -33.77371 -33.12545 -31.94793 -31.01382 -27.60060 -26.82559 -25.17253 -24.07369 -22.63558 -21.32943 -20.77096 -19.83595 -18.35103 -17.99767 -16.64089 -16.48369 -16.38572 -16.02647 -15.81177 -15.40168 -15.04033 -14.48080 -14.26739 -14.25435 -13.79163 -13.69401 -13.33071 -12.64364 -12.43154 -12.30530 -12.06254 -12.04795 -11.92257 -11.84723 -11.73647 -11.05226 -10.90361 -10.76341 -10.64957 -10.07306 -9.89922 -9.50627 -9.44075 -9.26127 -9.15744 -8.85802 -8.38757 -6.03482 -4.06766 0.19535 0.55973 2.01181 2.57761 2.79207 3.19404 3.30937 3.35880 3.37821 3.52567 4.20620 4.33533 4.42868 4.52629 4.70327 4.76801 4.82177 5.08269 5.22671 5.28698 5.32298 5.33691 5.60654 5.66731 5.69644 5.72847 5.86176 5.98354 6.08481 6.11250 6.28458 6.37985 6.55376 6.76882 6.95992 7.48454 7.56930 7.60995 7.73381 7.94887 8.21886 8.36127 8.99672 9.57493 11.07795 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.019706 B = 0.002838 C = 0.002487 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1420.513166 B = 9864.542981 C =11254.004304 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.104 4.104 3 C -0.035 4.035 4 C -0.132 4.132 5 C 0.531 3.469 6 O -0.515 6.515 7 O -0.509 6.509 8 C -0.035 4.035 9 C -0.136 4.136 10 C 0.552 3.448 11 O -0.537 6.537 12 N -0.718 5.718 13 C 0.116 3.884 14 C -0.122 4.122 15 C 0.024 3.976 16 C -0.524 4.524 17 H 0.055 0.945 18 C 0.057 3.943 19 N -0.894 5.894 20 Si 0.893 3.107 21 H -0.277 1.277 22 H -0.287 1.287 23 H -0.277 1.277 24 C -0.025 4.025 25 H 0.075 0.925 26 H 0.071 0.929 27 H 0.073 0.927 28 H 0.142 0.858 29 H 0.418 0.582 30 H 0.144 0.856 31 H 0.398 0.602 32 H 0.067 0.933 33 H 0.067 0.933 34 H 0.055 0.945 35 H 0.055 0.945 36 H 0.019 0.981 37 H 0.019 0.981 38 H 0.262 0.738 39 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.624 18.183 -0.040 25.322 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.105 4.105 3 C -0.054 4.054 4 C -0.134 4.134 5 C 0.375 3.625 6 O -0.404 6.404 7 O -0.321 6.321 8 C -0.054 4.054 9 C -0.139 4.139 10 C 0.338 3.662 11 O -0.415 6.415 12 N -0.369 5.369 13 C -0.007 4.007 14 C -0.160 4.160 15 C -0.013 4.013 16 C -0.562 4.562 17 H 0.073 0.927 18 C -0.144 4.144 19 N -0.533 5.533 20 Si 0.721 3.279 21 H -0.202 1.202 22 H -0.213 1.213 23 H -0.202 1.202 24 C -0.044 4.044 25 H 0.094 0.906 26 H 0.090 0.910 27 H 0.092 0.908 28 H 0.160 0.840 29 H 0.277 0.723 30 H 0.162 0.838 31 H 0.233 0.767 32 H 0.086 0.914 33 H 0.086 0.914 34 H 0.074 0.926 35 H 0.074 0.926 36 H 0.038 0.962 37 H 0.038 0.962 38 H 0.072 0.928 39 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -18.318 17.107 -0.034 25.064 hybrid contribution 1.736 1.111 -0.001 2.061 sum -16.582 18.218 -0.035 24.635 Atomic orbital electron populations 1.20817 0.89712 1.03514 1.03017 1.19856 0.97040 0.92020 1.01542 1.21322 0.91986 0.98910 0.93133 1.18900 0.93370 0.90470 1.10611 1.20777 0.80568 0.89191 0.71944 1.90893 1.69319 1.33798 1.46425 1.84561 1.20827 1.41128 1.85541 1.21663 1.00707 0.90531 0.92489 1.20070 0.94474 0.93258 1.06122 1.18126 0.82563 0.88306 0.77172 1.90786 1.68001 1.32718 1.50023 1.46166 1.05762 1.11054 1.73921 1.21721 0.92815 0.83830 1.02301 1.21907 0.90830 1.02245 1.00999 1.19022 0.94234 0.90378 0.97693 1.21162 0.91281 0.92625 1.51139 0.92670 1.25026 0.99028 0.95134 0.95239 1.69949 1.34707 0.98209 1.50414 0.86639 0.85209 0.77429 0.78597 1.20233 1.21268 1.20237 1.21508 0.92756 0.98790 0.91372 0.90587 0.91009 0.90784 0.84015 0.72304 0.83826 0.76654 0.91429 0.91436 0.92615 0.92622 0.96237 0.96240 0.92840 0.83701 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.63 10.00 36.01 0.36 -0.27 16 2 C -0.10 -0.86 5.87 -104.74 -0.61 -1.47 16 3 C -0.04 -0.30 9.24 -39.08 -0.36 -0.66 16 4 C -0.13 -1.26 5.87 -105.04 -0.62 -1.88 16 5 C 0.53 5.08 8.27 34.61 0.29 5.37 16 6 O -0.51 -6.11 17.12 -19.24 -0.33 -6.44 16 7 O -0.51 -3.63 12.67 -40.52 -0.51 -4.14 16 8 C -0.03 -0.34 9.10 -38.76 -0.35 -0.69 16 9 C -0.14 -1.55 5.87 -105.02 -0.62 -2.16 16 10 C 0.55 8.04 7.77 -12.32 -0.10 7.95 16 11 O -0.54 -9.70 16.34 5.32 0.09 -9.61 16 12 N -0.72 -10.03 5.51 -61.25 -0.34 -10.37 16 13 C 0.12 1.97 5.67 -4.04 -0.02 1.95 16 14 C -0.12 -2.31 5.27 -26.73 -0.14 -2.46 16 15 C 0.02 0.61 4.97 -27.89 -0.14 0.47 16 16 C -0.52 -14.45 9.11 -34.44 -0.31 -14.76 16 17 H 0.06 1.46 7.74 -52.49 -0.41 1.05 16 18 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 19 N -0.89 -26.62 13.29 55.43 0.74 -25.88 16 20 Si 0.89 21.30 29.54 -169.99 -5.02 16.28 16 21 H -0.28 -6.47 7.11 56.52 0.40 -6.06 16 22 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 23 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 24 C -0.03 -0.25 9.24 -39.09 -0.36 -0.62 16 25 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 26 H 0.07 0.32 8.08 -51.93 -0.42 -0.10 16 27 H 0.07 0.37 8.08 -51.93 -0.42 -0.05 16 28 H 0.14 1.07 7.64 -52.48 -0.40 0.67 16 29 H 0.42 1.16 9.11 45.56 0.42 1.58 16 30 H 0.14 1.20 5.95 -52.49 -0.31 0.89 16 31 H 0.40 4.48 6.50 -40.82 -0.27 4.21 16 32 H 0.07 1.22 8.14 -51.93 -0.42 0.79 16 33 H 0.07 1.22 8.14 -51.93 -0.42 0.79 16 34 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 35 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 36 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 39 H 0.15 1.43 7.64 -52.49 -0.40 1.03 16 LS Contribution 343.54 15.07 5.18 5.18 Total: -1.00 -34.43 343.54 -7.59 -42.02 By element: Atomic # 1 Polarization: 4.98 SS G_CDS: -4.30 Total: 0.68 kcal Atomic # 6 Polarization: -4.63 SS G_CDS: -3.09 Total: -7.72 kcal Atomic # 7 Polarization: -36.65 SS G_CDS: 0.40 Total: -36.25 kcal Atomic # 8 Polarization: -19.44 SS G_CDS: -0.76 Total: -20.20 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -34.43 -7.59 -42.02 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001611133238.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.282 kcal (2) G-P(sol) polarization free energy of solvation -34.432 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.713 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.590 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.021 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.303 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds