Wall clock time and date at job start Tue Mar 31 2020 06:02:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38090 * 119.84826 * 2 1 4 4 C 1.39714 * 120.14246 * 180.30197 * 3 2 1 5 5 C 1.47733 * 120.08177 * 179.71645 * 4 3 2 6 6 O 1.21468 * 120.00425 * 359.72600 * 5 4 3 7 7 O 1.34711 * 120.00241 * 179.72609 * 5 4 3 8 8 C 1.39387 * 119.83805 * 359.44127 * 4 3 2 9 9 C 1.39285 * 119.70584 * 0.27933 * 8 4 3 10 10 C 1.47859 * 120.07461 * 179.97438 * 9 8 4 11 11 O 1.21553 * 120.00227 * 180.02562 * 10 9 8 12 12 N 1.34778 * 120.00032 * 359.97438 * 10 9 8 13 13 C 1.46492 * 120.00116 * 180.02562 * 12 10 9 14 14 C 1.53004 * 109.47352 * 179.97438 * 13 12 10 15 15 C 1.53000 * 109.47476 * 179.97438 * 14 13 12 16 16 C 1.50694 * 109.47101 * 179.97438 * 15 14 13 17 17 H 1.07996 * 120.00416 * 0.02562 * 16 15 14 18 18 C 1.37883 * 119.99896 * 179.97438 * 16 15 14 19 19 N 1.31508 * 119.99979 * 359.97438 * 18 16 15 20 20 Si 1.86796 * 119.99814 * 180.02562 * 18 16 15 21 21 H 1.48497 * 109.47479 * 60.00079 * 20 18 16 22 22 H 1.48506 * 109.47223 * 180.02562 * 20 18 16 23 23 H 1.48503 * 109.47196 * 299.99510 * 20 18 16 24 24 C 1.38068 * 119.85151 * 179.74425 * 2 1 3 25 25 H 1.09000 * 109.46892 * 270.25530 * 1 2 3 26 26 H 1.08991 * 109.47124 * 30.25328 * 1 2 3 27 27 H 1.09004 * 109.46987 * 150.25999 * 1 2 3 28 28 H 1.08005 * 119.92816 * 0.04002 * 3 2 1 29 29 H 0.96700 * 117.00324 * 180.02562 * 7 5 4 30 30 H 1.07997 * 120.15057 * 180.25151 * 8 4 3 31 31 H 0.97007 * 119.99913 * 359.97438 * 12 10 9 32 32 H 1.08996 * 109.46996 * 299.99957 * 13 12 10 33 33 H 1.08999 * 109.47502 * 59.99945 * 13 12 10 34 34 H 1.08996 * 109.47038 * 299.99935 * 14 13 12 35 35 H 1.08999 * 109.46859 * 59.99554 * 14 13 12 36 36 H 1.09004 * 109.46824 * 299.99742 * 15 14 13 37 37 H 1.08998 * 109.46940 * 59.99669 * 15 14 13 38 38 H 0.97000 * 120.00404 * 179.97438 * 19 18 16 39 39 H 1.07998 * 119.92097 * 359.95664 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1943 1.1977 0.0000 4 6 3.5914 1.2049 -0.0064 5 6 4.3253 2.4870 -0.0127 6 8 3.7141 3.5367 -0.0174 7 8 5.6724 2.4921 -0.0132 8 6 4.2912 -0.0006 -0.0009 9 6 3.5914 -1.2049 0.0049 10 6 4.3254 -2.4884 0.0101 11 8 3.7134 -3.5386 0.0148 12 7 5.6732 -2.4939 0.0087 13 6 6.4005 -3.7655 0.0133 14 6 7.9059 -3.4922 0.0099 15 6 8.6655 -4.8203 0.0153 16 6 10.1482 -4.5509 0.0113 17 1 10.5123 -3.5342 0.0059 18 6 11.0399 -5.6026 0.0156 19 7 10.5965 -6.8406 0.0238 20 14 12.8778 -5.2687 0.0114 21 1 13.2414 -4.4851 1.2192 22 1 13.6151 -6.5578 0.0166 23 1 13.2380 -4.4979 -1.2058 24 6 2.1943 -1.1975 0.0053 25 1 -0.3633 0.0046 1.0277 26 1 -0.3633 0.8876 -0.5177 27 1 -0.3633 -0.8923 -0.5098 28 1 1.6506 2.1310 0.0007 29 1 6.1082 3.3553 -0.0171 30 1 5.3711 -0.0009 -0.0017 31 1 6.1616 -1.6558 0.0039 32 1 6.1358 -4.3322 0.9059 33 1 6.1339 -4.3398 -0.8739 34 1 8.1702 -2.9257 -0.8830 35 1 8.1728 -2.9177 0.8969 36 1 8.4011 -5.3864 0.9085 37 1 8.3985 -5.3951 -0.8715 38 1 11.2237 -7.5805 0.0264 39 1 1.6506 -2.1306 0.0102 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001611133238.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:02:05 Heat of formation + Delta-G solvation = -148.364800 kcal Electronic energy + Delta-G solvation = -21702.030024 eV Core-core repulsion = 18186.607388 eV Total energy + Delta-G solvation = -3515.422636 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.130 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.74231 -40.92431 -39.42350 -37.13315 -37.01553 -35.30434 -34.21608 -33.09965 -32.38581 -28.81320 -27.92239 -26.07779 -25.36246 -24.00598 -22.36794 -21.98630 -21.04417 -19.04783 -18.93296 -18.43051 -17.60151 -17.11774 -16.91939 -16.81627 -16.65829 -16.48001 -15.93879 -15.48495 -15.25420 -14.59052 -14.53347 -14.29005 -14.02324 -13.76650 -13.56218 -13.16171 -13.01331 -12.77348 -12.71185 -12.71020 -12.58203 -12.53728 -12.40454 -11.82298 -11.66879 -11.60570 -11.26886 -11.00958 -10.53803 -10.38289 -10.11960 -9.89919 -8.18578 -6.29944 -0.56570 -0.20586 1.25003 1.42596 1.45420 1.53189 1.84451 1.95631 2.06126 2.43244 2.67122 3.15312 3.41398 3.58676 3.82495 4.00962 4.07895 4.13681 4.15790 4.21589 4.39057 4.55138 4.63908 4.75135 4.84817 4.93699 4.94513 4.96703 5.12628 5.17188 5.19562 5.34314 5.36473 5.52380 5.52874 5.60995 5.71852 5.85239 6.23091 6.45038 6.87572 6.91718 7.09218 7.39635 8.93357 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.019706 B = 0.002838 C = 0.002487 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1420.513166 B = 9864.542981 C =11254.004304 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.097 4.097 3 C -0.030 4.030 4 C -0.141 4.141 5 C 0.537 3.463 6 O -0.541 6.541 7 O -0.504 6.504 8 C -0.028 4.028 9 C -0.150 4.150 10 C 0.553 3.447 11 O -0.579 6.579 12 N -0.708 5.708 13 C 0.129 3.871 14 C -0.103 4.103 15 C 0.024 3.976 16 C -0.542 4.542 17 H 0.067 0.933 18 C -0.003 4.003 19 N -0.935 5.935 20 Si 0.966 3.034 21 H -0.265 1.265 22 H -0.287 1.287 23 H -0.265 1.265 24 C -0.032 4.032 25 H 0.086 0.914 26 H 0.086 0.914 27 H 0.078 0.922 28 H 0.155 0.845 29 H 0.436 0.564 30 H 0.157 0.843 31 H 0.414 0.586 32 H 0.054 0.946 33 H 0.054 0.946 34 H 0.069 0.931 35 H 0.069 0.931 36 H -0.007 1.007 37 H -0.007 1.007 38 H 0.263 0.737 39 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.422 20.736 -0.047 27.084 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.097 4.097 3 C -0.048 4.048 4 C -0.142 4.142 5 C 0.383 3.617 6 O -0.433 6.433 7 O -0.318 6.318 8 C -0.047 4.047 9 C -0.154 4.154 10 C 0.341 3.659 11 O -0.460 6.460 12 N -0.360 5.360 13 C 0.005 3.995 14 C -0.141 4.141 15 C -0.014 4.014 16 C -0.580 4.580 17 H 0.085 0.915 18 C -0.201 4.201 19 N -0.576 5.576 20 Si 0.791 3.209 21 H -0.190 1.190 22 H -0.213 1.213 23 H -0.190 1.190 24 C -0.051 4.051 25 H 0.105 0.895 26 H 0.105 0.895 27 H 0.097 0.903 28 H 0.173 0.827 29 H 0.299 0.701 30 H 0.174 0.826 31 H 0.252 0.748 32 H 0.073 0.927 33 H 0.072 0.928 34 H 0.088 0.912 35 H 0.088 0.912 36 H 0.011 0.989 37 H 0.011 0.989 38 H 0.072 0.928 39 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -18.091 19.716 -0.042 26.758 hybrid contribution 1.628 0.347 0.002 1.664 sum -16.463 20.063 -0.040 25.953 Atomic orbital electron populations 1.20908 0.87644 1.04532 1.04011 1.20081 0.98420 0.91028 1.00151 1.21570 0.91877 0.99549 0.91821 1.19022 0.93900 0.90427 1.10833 1.20710 0.81133 0.88646 0.71227 1.90888 1.69989 1.34558 1.47908 1.84522 1.19644 1.42802 1.84824 1.21694 1.01287 0.89906 0.91802 1.19799 0.94838 0.92037 1.08682 1.18582 0.82389 0.89023 0.75872 1.90762 1.68749 1.34515 1.51981 1.45919 1.05794 1.10548 1.73743 1.21314 0.91988 0.85060 1.01138 1.21616 0.91119 0.99070 1.02290 1.18936 0.94421 0.92894 0.95137 1.21663 0.92569 0.93234 1.50499 0.91472 1.26014 1.04401 0.94852 0.94805 1.70098 1.36498 0.99303 1.51664 0.85484 0.78803 0.77383 0.79277 1.19011 1.21257 1.19020 1.21606 0.92393 0.99549 0.91547 0.89509 0.89518 0.90297 0.82705 0.70075 0.82563 0.74804 0.92745 0.92754 0.91217 0.91224 0.98887 0.98892 0.92819 0.84060 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.00 10.00 71.24 0.71 -0.29 16 2 C -0.10 -1.40 5.87 -19.94 -0.12 -1.52 16 3 C -0.03 -0.45 9.24 22.59 0.21 -0.24 16 4 C -0.14 -2.39 5.87 -20.13 -0.12 -2.51 16 5 C 0.54 9.16 8.27 70.33 0.58 9.74 16 6 O -0.54 -11.88 17.12 19.94 0.34 -11.53 16 7 O -0.50 -5.91 12.67 -56.21 -0.71 -6.62 16 8 C -0.03 -0.50 9.10 22.80 0.21 -0.29 16 9 C -0.15 -3.30 5.87 -20.12 -0.12 -3.41 16 10 C 0.55 16.05 7.77 86.79 0.67 16.72 16 11 O -0.58 -21.43 16.34 -3.88 -0.06 -21.49 16 12 N -0.71 -19.28 5.51 -465.97 -2.57 -21.84 16 13 C 0.13 4.43 5.67 86.38 0.49 4.92 16 14 C -0.10 -3.86 5.27 30.60 0.16 -3.70 16 15 C 0.02 1.22 4.97 29.85 0.15 1.37 16 16 C -0.54 -29.85 9.11 25.60 0.23 -29.62 16 17 H 0.07 3.46 7.74 -2.91 -0.02 3.43 16 18 C 0.00 -0.17 5.46 84.66 0.46 0.29 16 19 N -0.94 -56.83 13.29 21.45 0.28 -56.55 16 20 Si 0.97 43.38 29.54 68.60 2.03 45.40 16 21 H -0.27 -11.35 7.11 99.48 0.71 -10.64 16 22 H -0.29 -12.77 7.11 99.48 0.71 -12.06 16 23 H -0.27 -11.35 7.11 99.48 0.71 -10.65 16 24 C -0.03 -0.62 9.24 22.59 0.21 -0.41 16 25 H 0.09 0.61 8.14 -2.39 -0.02 0.59 16 26 H 0.09 0.52 8.08 -2.39 -0.02 0.50 16 27 H 0.08 0.64 8.08 -2.39 -0.02 0.62 16 28 H 0.16 1.94 7.64 -2.91 -0.02 1.92 16 29 H 0.44 1.29 9.11 -74.06 -0.67 0.61 16 30 H 0.16 2.25 5.95 -2.91 -0.02 2.23 16 31 H 0.41 8.56 6.50 -92.70 -0.60 7.96 16 32 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 33 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 34 H 0.07 2.43 8.14 -2.39 -0.02 2.41 16 35 H 0.07 2.42 8.14 -2.39 -0.02 2.40 16 36 H -0.01 -0.41 8.14 -2.38 -0.02 -0.43 16 37 H -0.01 -0.41 8.14 -2.39 -0.02 -0.43 16 38 H 0.26 15.08 8.31 -92.71 -0.77 14.31 16 39 H 0.14 2.78 7.64 -2.91 -0.02 2.76 16 Total: -1.00 -74.90 343.54 2.86 -72.04 By element: Atomic # 1 Polarization: 9.73 SS G_CDS: -0.19 Total: 9.54 kcal Atomic # 6 Polarization: -12.69 SS G_CDS: 3.74 Total: -8.95 kcal Atomic # 7 Polarization: -76.11 SS G_CDS: -2.28 Total: -78.39 kcal Atomic # 8 Polarization: -39.21 SS G_CDS: -0.43 Total: -39.64 kcal Atomic # 14 Polarization: 43.38 SS G_CDS: 2.03 Total: 45.40 kcal Total: -74.90 2.86 -72.04 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001611133238.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.321 kcal (2) G-P(sol) polarization free energy of solvation -74.905 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.226 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.861 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.044 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.365 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds