Wall clock time and date at job start Tue Mar 31 2020 06:02:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38088 * 119.84542 * 2 1 4 4 C 1.39717 * 120.13716 * 180.25407 * 3 2 1 5 5 C 1.47738 * 120.07913 * 179.76765 * 4 3 2 6 6 O 1.21474 * 119.99950 * 179.72658 * 5 4 3 7 7 O 1.34705 * 120.00008 * 359.72158 * 5 4 3 8 8 C 1.39386 * 119.84048 * 359.49147 * 4 3 2 9 9 C 1.39283 * 119.70226 * 0.25117 * 8 4 3 10 10 C 1.47864 * 120.06958 * 179.97438 * 9 8 4 11 11 O 1.21551 * 119.99862 * 320.65675 * 10 9 8 12 12 N 1.34777 * 120.00044 * 140.66118 * 10 9 8 13 13 C 1.46498 * 119.99963 * 4.86504 * 12 10 9 14 14 C 1.46505 * 119.99604 * 184.86977 * 12 10 9 15 15 H 1.09000 * 109.47415 * 359.97438 * 14 12 10 16 16 C 1.52999 * 109.47001 * 239.99514 * 14 12 10 17 17 C 1.50705 * 109.46625 * 119.99934 * 14 12 10 18 18 H 1.07998 * 120.00210 * 359.97438 * 17 14 12 19 19 C 1.37884 * 119.99700 * 179.97438 * 17 14 12 20 20 N 1.31517 * 119.99872 * 0.02562 * 19 17 14 21 21 Si 1.86800 * 119.99962 * 179.97438 * 19 17 14 22 22 H 1.48498 * 109.47210 * 60.00094 * 21 19 17 23 23 H 1.48506 * 109.47011 * 180.02562 * 21 19 17 24 24 H 1.48504 * 109.46866 * 300.00140 * 21 19 17 25 25 C 1.38064 * 119.84982 * 179.74075 * 2 1 3 26 26 H 1.09005 * 109.47400 * 270.25457 * 1 2 3 27 27 H 1.09004 * 109.47427 * 30.25621 * 1 2 3 28 28 H 1.08998 * 109.47361 * 150.25720 * 1 2 3 29 29 H 1.07996 * 119.93046 * 359.97438 * 3 2 1 30 30 H 0.96704 * 116.99877 * 180.02562 * 7 5 4 31 31 H 1.08008 * 120.14758 * 180.23408 * 8 4 3 32 32 H 1.09000 * 109.46876 * 85.70374 * 13 12 10 33 33 H 1.09002 * 109.46736 * 205.69584 * 13 12 10 34 34 H 1.08993 * 109.47436 * 325.70312 * 13 12 10 35 35 H 1.08995 * 109.47272 * 180.02562 * 16 14 12 36 36 H 1.09000 * 109.47233 * 300.00352 * 16 14 12 37 37 H 1.09001 * 109.47279 * 60.00310 * 16 14 12 38 38 H 0.96998 * 119.99640 * 179.97438 * 20 19 17 39 39 H 1.08003 * 119.92168 * 359.97438 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1942 1.1977 0.0000 4 6 3.5913 1.2049 -0.0054 5 6 4.3252 2.4870 -0.0105 6 8 5.5400 2.4916 -0.0102 7 8 3.6474 3.6511 -0.0158 8 6 4.2911 -0.0006 0.0000 9 6 3.5912 -1.2048 0.0054 10 6 4.3253 -2.4884 0.0106 11 8 5.3334 -2.6146 -0.6567 12 7 3.8765 -3.5184 0.7550 13 6 2.6057 -3.4030 1.4746 14 6 4.6598 -4.7532 0.8446 15 1 5.5660 -4.6529 0.2474 16 6 3.8283 -5.9239 0.3163 17 6 5.0310 -5.0093 2.2826 18 1 4.7154 -4.3209 3.0526 19 6 5.7734 -6.1225 2.6152 20 7 6.1581 -6.9606 1.6774 21 14 6.2342 -6.4396 4.3975 22 1 4.9995 -6.5756 5.2113 23 1 7.0280 -7.6914 4.4884 24 1 7.0419 -5.3035 4.9095 25 6 2.1942 -1.1975 0.0054 26 1 -0.3634 0.0046 1.0277 27 1 -0.3634 0.8877 -0.5178 28 1 -0.3634 -0.8923 -0.5098 29 1 1.6505 2.1309 -0.0004 30 1 4.1711 4.4641 -0.0194 31 1 5.3711 -0.0009 -0.0003 32 1 1.7859 -3.6765 0.8103 33 1 2.6138 -4.0714 2.3357 34 1 2.4717 -2.3757 1.8132 35 1 4.4108 -6.8427 0.3834 36 1 2.9219 -6.0244 0.9133 37 1 3.5598 -5.7387 -0.7237 38 1 6.6807 -7.7435 1.9114 39 1 1.6504 -2.1306 0.0101 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001611133258.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:02:10 Heat of formation + Delta-G solvation = -96.790790 kcal Electronic energy + Delta-G solvation = -23025.201487 eV Core-core repulsion = 19512.015268 eV Total energy + Delta-G solvation = -3513.186219 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.130 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.68303 -39.70340 -38.11272 -36.26610 -35.46131 -33.13147 -32.96977 -31.59383 -29.18270 -27.17095 -26.40031 -25.25809 -24.78741 -23.76516 -21.09028 -20.49747 -18.89056 -18.04909 -17.27268 -16.66772 -16.25135 -16.04255 -15.78360 -15.35535 -15.21569 -14.46465 -14.09053 -13.82641 -13.71565 -13.37475 -13.07855 -12.78180 -12.55012 -12.32155 -12.14039 -12.01124 -11.74889 -11.59021 -11.49768 -11.24584 -11.07281 -10.87616 -10.77410 -10.70271 -10.29730 -10.19705 -9.29412 -9.18661 -9.01135 -8.86593 -8.45322 -7.68217 -6.09990 -4.18530 0.51046 1.02731 2.32368 2.77493 3.23476 3.26957 3.32323 3.34300 3.69837 3.93033 4.37157 4.52491 4.63190 4.78615 5.01280 5.06756 5.20979 5.23953 5.30500 5.41610 5.56276 5.61103 5.70217 5.84181 5.88739 6.10286 6.19715 6.25382 6.30376 6.30750 6.61741 6.72350 6.79844 7.01796 7.34812 7.47829 7.67551 7.71177 7.97393 8.14707 8.42796 8.76439 8.94238 9.47951 10.95349 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.019465 B = 0.004098 C = 0.003777 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1438.101428 B = 6830.463952 C = 7411.049867 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.110 4.110 3 C -0.050 4.050 4 C -0.135 4.135 5 C 0.529 3.471 6 O -0.508 6.508 7 O -0.514 6.514 8 C -0.010 4.010 9 C -0.120 4.120 10 C 0.545 3.455 11 O -0.541 6.541 12 N -0.583 5.583 13 C 0.077 3.923 14 C 0.258 3.742 15 H 0.065 0.935 16 C -0.146 4.146 17 C -0.529 4.529 18 H 0.060 0.940 19 C 0.066 3.934 20 N -0.887 5.887 21 Si 0.900 3.100 22 H -0.276 1.276 23 H -0.286 1.286 24 H -0.277 1.277 25 C -0.059 4.059 26 H 0.073 0.927 27 H 0.068 0.932 28 H 0.070 0.930 29 H 0.139 0.861 30 H 0.413 0.587 31 H 0.146 0.854 32 H 0.046 0.954 33 H 0.084 0.916 34 H 0.059 0.941 35 H 0.094 0.906 36 H 0.030 0.970 37 H 0.012 0.988 38 H 0.265 0.735 39 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.442 15.665 -2.099 20.748 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.110 4.110 3 C -0.069 4.069 4 C -0.136 4.136 5 C 0.373 3.627 6 O -0.397 6.397 7 O -0.326 6.326 8 C -0.029 4.029 9 C -0.123 4.123 10 C 0.331 3.669 11 O -0.420 6.420 12 N -0.313 5.313 13 C -0.067 4.067 14 C 0.158 3.842 15 H 0.083 0.917 16 C -0.204 4.204 17 C -0.568 4.568 18 H 0.078 0.922 19 C -0.137 4.137 20 N -0.524 5.524 21 Si 0.727 3.273 22 H -0.202 1.202 23 H -0.211 1.211 24 H -0.202 1.202 25 C -0.077 4.077 26 H 0.092 0.908 27 H 0.087 0.913 28 H 0.089 0.911 29 H 0.157 0.843 30 H 0.272 0.728 31 H 0.164 0.836 32 H 0.064 0.936 33 H 0.103 0.897 34 H 0.077 0.923 35 H 0.113 0.887 36 H 0.049 0.951 37 H 0.031 0.969 38 H 0.075 0.925 39 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -12.694 14.999 -2.457 19.803 hybrid contribution 0.602 0.340 1.059 1.265 sum -12.092 15.339 -1.398 19.582 Atomic orbital electron populations 1.20783 0.90120 1.03168 1.02750 1.19833 0.96724 0.92374 1.02077 1.21408 0.92438 0.98520 0.94502 1.18859 0.93598 0.90007 1.11124 1.20840 0.85505 0.84197 0.72152 1.90926 1.14983 1.87978 1.45842 1.84539 1.45054 1.16935 1.86070 1.21304 1.01321 0.89209 0.91034 1.20153 0.93857 0.94467 1.03873 1.18129 0.84647 0.83272 0.80848 1.90764 1.25704 1.82818 1.42717 1.48188 1.21869 1.16002 1.45211 1.21937 0.85483 1.01703 0.97584 1.19015 0.90520 0.77403 0.97263 0.91736 1.22085 0.99564 1.02926 0.95870 1.21270 1.34696 1.08522 0.92304 0.92210 1.24887 0.95361 0.95733 0.97678 1.69869 1.36896 1.13354 1.32319 0.86538 0.78574 0.77636 0.84538 1.20202 1.21127 1.20211 1.21926 0.93165 0.98949 0.93655 0.90789 0.91287 0.91107 0.84342 0.72793 0.83616 0.93595 0.89707 0.92288 0.88715 0.95105 0.96904 0.92550 0.83804 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.78 10.00 36.00 0.36 -0.42 16 2 C -0.11 -1.14 5.87 -104.74 -0.61 -1.75 16 3 C -0.05 -0.53 9.26 -39.08 -0.36 -0.89 16 4 C -0.13 -1.78 5.87 -105.04 -0.62 -2.40 16 5 C 0.53 6.72 8.27 34.61 0.29 7.01 16 6 O -0.51 -8.16 17.13 -19.25 -0.33 -8.49 16 7 O -0.51 -4.40 12.67 -40.50 -0.51 -4.91 16 8 C -0.01 -0.16 9.17 -38.77 -0.36 -0.51 16 9 C -0.12 -1.99 5.23 -105.02 -0.55 -2.54 16 10 C 0.54 11.60 7.35 -12.32 -0.09 11.51 16 11 O -0.54 -13.74 16.25 5.32 0.09 -13.66 16 12 N -0.58 -12.34 2.75 -176.37 -0.49 -12.83 16 13 C 0.08 1.24 7.83 59.85 0.47 1.71 16 14 C 0.26 6.53 2.63 -69.08 -0.18 6.35 16 15 H 0.06 1.91 6.91 -51.93 -0.36 1.55 16 16 C -0.15 -3.44 8.97 37.16 0.33 -3.10 16 17 C -0.53 -14.15 7.96 -34.44 -0.27 -14.42 16 18 H 0.06 1.57 7.41 -52.49 -0.39 1.18 16 19 C 0.07 1.79 5.30 -17.82 -0.09 1.69 16 20 N -0.89 -24.89 11.32 55.43 0.63 -24.26 16 21 Si 0.90 20.89 29.54 -169.99 -5.02 15.87 16 22 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 23 H -0.29 -6.60 7.11 56.52 0.40 -6.19 16 24 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 25 C -0.06 -0.75 7.20 -39.10 -0.28 -1.03 16 26 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.07 0.39 8.08 -51.93 -0.42 -0.03 16 28 H 0.07 0.45 8.08 -51.93 -0.42 0.04 16 29 H 0.14 1.13 7.60 -52.49 -0.40 0.73 16 30 H 0.41 1.67 9.11 45.56 0.42 2.08 16 31 H 0.15 2.58 7.64 -52.48 -0.40 2.18 16 32 H 0.05 0.62 6.90 -51.93 -0.36 0.26 16 33 H 0.08 1.46 7.09 -51.93 -0.37 1.09 16 34 H 0.06 0.82 5.81 -51.93 -0.30 0.52 16 35 H 0.09 2.45 6.07 -51.93 -0.32 2.14 16 36 H 0.03 0.66 7.67 -51.93 -0.40 0.26 16 37 H 0.01 0.27 8.14 -51.93 -0.42 -0.16 16 38 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 39 H 0.14 1.65 5.31 -52.48 -0.28 1.37 16 LS Contribution 330.15 15.07 4.98 4.98 Total: -1.00 -33.62 330.15 -6.60 -40.22 By element: Atomic # 1 Polarization: 5.85 SS G_CDS: -3.97 Total: 1.88 kcal Atomic # 6 Polarization: 3.17 SS G_CDS: -1.97 Total: 1.20 kcal Atomic # 7 Polarization: -37.23 SS G_CDS: 0.14 Total: -37.09 kcal Atomic # 8 Polarization: -26.30 SS G_CDS: -0.76 Total: -27.05 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.87 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -33.62 -6.60 -40.22 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001611133258.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.571 kcal (2) G-P(sol) polarization free energy of solvation -33.617 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.188 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.603 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.220 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.791 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds