Wall clock time and date at job start Tue Mar 31 2020 06:02:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38088 * 119.84542 * 2 1 4 4 C 1.39717 * 120.13716 * 180.25407 * 3 2 1 5 5 C 1.47738 * 120.07913 * 179.76765 * 4 3 2 6 6 O 1.21474 * 119.99950 * 179.72658 * 5 4 3 7 7 O 1.34705 * 120.00008 * 359.72158 * 5 4 3 8 8 C 1.39386 * 119.84048 * 359.49147 * 4 3 2 9 9 C 1.39283 * 119.70226 * 0.25117 * 8 4 3 10 10 C 1.47864 * 120.06958 * 179.97438 * 9 8 4 11 11 O 1.21551 * 119.99862 * 320.65675 * 10 9 8 12 12 N 1.34777 * 120.00044 * 140.66118 * 10 9 8 13 13 C 1.46498 * 119.99963 * 4.86504 * 12 10 9 14 14 C 1.46505 * 119.99604 * 184.86977 * 12 10 9 15 15 H 1.09000 * 109.47415 * 359.97438 * 14 12 10 16 16 C 1.52999 * 109.47001 * 239.99514 * 14 12 10 17 17 C 1.50705 * 109.46625 * 119.99934 * 14 12 10 18 18 H 1.07998 * 120.00210 * 359.97438 * 17 14 12 19 19 C 1.37884 * 119.99700 * 179.97438 * 17 14 12 20 20 N 1.31517 * 119.99872 * 0.02562 * 19 17 14 21 21 Si 1.86800 * 119.99962 * 179.97438 * 19 17 14 22 22 H 1.48498 * 109.47210 * 60.00094 * 21 19 17 23 23 H 1.48506 * 109.47011 * 180.02562 * 21 19 17 24 24 H 1.48504 * 109.46866 * 300.00140 * 21 19 17 25 25 C 1.38064 * 119.84982 * 179.74075 * 2 1 3 26 26 H 1.09005 * 109.47400 * 270.25457 * 1 2 3 27 27 H 1.09004 * 109.47427 * 30.25621 * 1 2 3 28 28 H 1.08998 * 109.47361 * 150.25720 * 1 2 3 29 29 H 1.07996 * 119.93046 * 359.97438 * 3 2 1 30 30 H 0.96704 * 116.99877 * 180.02562 * 7 5 4 31 31 H 1.08008 * 120.14758 * 180.23408 * 8 4 3 32 32 H 1.09000 * 109.46876 * 85.70374 * 13 12 10 33 33 H 1.09002 * 109.46736 * 205.69584 * 13 12 10 34 34 H 1.08993 * 109.47436 * 325.70312 * 13 12 10 35 35 H 1.08995 * 109.47272 * 180.02562 * 16 14 12 36 36 H 1.09000 * 109.47233 * 300.00352 * 16 14 12 37 37 H 1.09001 * 109.47279 * 60.00310 * 16 14 12 38 38 H 0.96998 * 119.99640 * 179.97438 * 20 19 17 39 39 H 1.08003 * 119.92168 * 359.97438 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1942 1.1977 0.0000 4 6 3.5913 1.2049 -0.0054 5 6 4.3252 2.4870 -0.0105 6 8 5.5400 2.4916 -0.0102 7 8 3.6474 3.6511 -0.0158 8 6 4.2911 -0.0006 0.0000 9 6 3.5912 -1.2048 0.0054 10 6 4.3253 -2.4884 0.0106 11 8 5.3334 -2.6146 -0.6567 12 7 3.8765 -3.5184 0.7550 13 6 2.6057 -3.4030 1.4746 14 6 4.6598 -4.7532 0.8446 15 1 5.5660 -4.6529 0.2474 16 6 3.8283 -5.9239 0.3163 17 6 5.0310 -5.0093 2.2826 18 1 4.7154 -4.3209 3.0526 19 6 5.7734 -6.1225 2.6152 20 7 6.1581 -6.9606 1.6774 21 14 6.2342 -6.4396 4.3975 22 1 4.9995 -6.5756 5.2113 23 1 7.0280 -7.6914 4.4884 24 1 7.0419 -5.3035 4.9095 25 6 2.1942 -1.1975 0.0054 26 1 -0.3634 0.0046 1.0277 27 1 -0.3634 0.8877 -0.5178 28 1 -0.3634 -0.8923 -0.5098 29 1 1.6505 2.1309 -0.0004 30 1 4.1711 4.4641 -0.0194 31 1 5.3711 -0.0009 -0.0003 32 1 1.7859 -3.6765 0.8103 33 1 2.6138 -4.0714 2.3357 34 1 2.4717 -2.3757 1.8132 35 1 4.4108 -6.8427 0.3834 36 1 2.9219 -6.0244 0.9133 37 1 3.5598 -5.7387 -0.7237 38 1 6.6807 -7.7435 1.9114 39 1 1.6504 -2.1306 0.0101 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001611133258.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:02:09 Heat of formation + Delta-G solvation = -119.778765 kcal Electronic energy + Delta-G solvation = -23026.198320 eV Core-core repulsion = 19512.015268 eV Total energy + Delta-G solvation = -3514.183052 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.130 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.78720 -40.98654 -39.38105 -37.28085 -37.14790 -34.97573 -33.89463 -32.97361 -30.93439 -28.09173 -27.66838 -27.32091 -25.79585 -25.15949 -22.57165 -21.57225 -20.33832 -19.09760 -18.63368 -18.29438 -17.78001 -17.17791 -17.00157 -16.77283 -16.52193 -16.19012 -15.53181 -14.92849 -14.62102 -14.48821 -14.36523 -14.29798 -14.01963 -13.62381 -13.31221 -13.05603 -12.97735 -12.81395 -12.78115 -12.71087 -12.60296 -12.58482 -12.40407 -12.19999 -12.13350 -11.76485 -11.24339 -10.85920 -10.53532 -10.14301 -9.86309 -9.40831 -8.16635 -6.33673 -0.49846 -0.07584 1.30991 1.40815 1.43749 1.50859 1.73498 1.95839 2.25320 2.44783 2.65784 3.11606 3.44272 3.66806 3.85879 3.94855 4.07532 4.26638 4.37527 4.53497 4.61109 4.65538 4.74836 4.82805 4.90111 4.98672 5.00139 5.03232 5.07879 5.17428 5.30060 5.40164 5.45700 5.50324 5.55283 5.63564 5.72497 6.00574 6.12928 6.69203 6.73050 6.90395 7.20423 7.39940 8.87866 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.019465 B = 0.004098 C = 0.003777 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1438.101428 B = 6830.463952 C = 7411.049867 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.093 4.093 3 C -0.028 4.028 4 C -0.140 4.140 5 C 0.537 3.463 6 O -0.553 6.553 7 O -0.493 6.493 8 C -0.034 4.034 9 C -0.140 4.140 10 C 0.535 3.465 11 O -0.602 6.602 12 N -0.588 5.588 13 C 0.072 3.928 14 C 0.260 3.740 15 H 0.006 0.994 16 C -0.130 4.130 17 C -0.542 4.542 18 H 0.062 0.938 19 C 0.017 3.983 20 N -0.916 5.916 21 Si 0.966 3.034 22 H -0.259 1.259 23 H -0.283 1.283 24 H -0.280 1.280 25 C -0.053 4.053 26 H 0.091 0.909 27 H 0.090 0.910 28 H 0.080 0.920 29 H 0.177 0.823 30 H 0.436 0.564 31 H 0.109 0.891 32 H 0.082 0.918 33 H 0.075 0.925 34 H 0.084 0.916 35 H 0.068 0.932 36 H 0.052 0.948 37 H 0.021 0.979 38 H 0.265 0.735 39 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.609 17.663 -0.857 24.956 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.093 4.093 3 C -0.046 4.046 4 C -0.142 4.142 5 C 0.383 3.617 6 O -0.446 6.446 7 O -0.307 6.307 8 C -0.053 4.053 9 C -0.143 4.143 10 C 0.325 3.675 11 O -0.485 6.485 12 N -0.317 5.317 13 C -0.069 4.069 14 C 0.159 3.841 15 H 0.024 0.976 16 C -0.189 4.189 17 C -0.580 4.580 18 H 0.080 0.920 19 C -0.183 4.183 20 N -0.555 5.555 21 Si 0.790 3.210 22 H -0.183 1.183 23 H -0.208 1.208 24 H -0.206 1.206 25 C -0.071 4.071 26 H 0.110 0.890 27 H 0.108 0.892 28 H 0.099 0.901 29 H 0.194 0.806 30 H 0.298 0.702 31 H 0.128 0.872 32 H 0.100 0.900 33 H 0.093 0.907 34 H 0.103 0.897 35 H 0.087 0.913 36 H 0.071 0.929 37 H 0.040 0.960 38 H 0.075 0.925 39 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -16.931 17.038 -1.196 24.050 hybrid contribution 1.826 -0.144 0.626 1.935 sum -15.106 16.894 -0.570 22.670 Atomic orbital electron populations 1.20919 0.86671 1.04803 1.04336 1.20261 0.98802 0.90969 0.99228 1.21841 0.90938 1.00322 0.91521 1.18912 0.94921 0.89100 1.11228 1.20757 0.84779 0.85110 0.71102 1.90920 1.16947 1.88655 1.48035 1.84468 1.44510 1.16740 1.84962 1.21072 0.99952 0.90794 0.93504 1.19708 0.95362 0.91644 1.07567 1.18927 0.84180 0.84753 0.79685 1.90711 1.28594 1.84005 1.45224 1.48161 1.23154 1.14755 1.45590 1.22242 0.83870 1.03248 0.97576 1.18627 0.89690 0.79943 0.95888 0.97564 1.21859 0.99535 1.00816 0.96692 1.21529 1.35024 1.08627 0.92864 0.92011 1.25736 0.95190 0.95526 1.01861 1.70019 1.37391 1.13745 1.34333 0.85499 0.78733 0.77146 0.79574 1.18297 1.20831 1.20608 1.22078 0.91086 1.00980 0.92960 0.89004 0.89155 0.90148 0.80592 0.70181 0.87239 0.90018 0.90652 0.89746 0.91306 0.92904 0.96029 0.92545 0.82180 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.86 10.00 71.24 0.71 -0.15 16 2 C -0.09 -1.49 5.87 -19.94 -0.12 -1.61 16 3 C -0.03 -0.48 9.26 22.59 0.21 -0.27 16 4 C -0.14 -3.54 5.87 -20.13 -0.12 -3.65 16 5 C 0.54 13.05 8.27 70.33 0.58 13.63 16 6 O -0.55 -18.25 17.13 19.92 0.34 -17.91 16 7 O -0.49 -6.80 12.67 -56.15 -0.71 -7.51 16 8 C -0.03 -1.14 9.17 22.80 0.21 -0.93 16 9 C -0.14 -4.70 5.23 -20.12 -0.11 -4.80 16 10 C 0.54 24.12 7.35 86.79 0.64 24.75 16 11 O -0.60 -33.48 16.25 -3.88 -0.06 -33.54 16 12 N -0.59 -25.56 2.75 -830.19 -2.29 -27.85 16 13 C 0.07 2.21 7.83 127.77 1.00 3.21 16 14 C 0.26 13.82 2.63 44.25 0.12 13.94 16 15 H 0.01 0.41 6.91 -2.39 -0.02 0.39 16 16 C -0.13 -6.28 8.97 71.98 0.65 -5.63 16 17 C -0.54 -29.76 7.96 25.60 0.20 -29.56 16 18 H 0.06 3.28 7.41 -2.91 -0.02 3.26 16 19 C 0.02 0.92 5.30 84.66 0.45 1.37 16 20 N -0.92 -53.23 11.32 21.45 0.24 -52.99 16 21 Si 0.97 43.26 29.54 68.60 2.03 45.28 16 22 H -0.26 -10.78 7.11 99.48 0.71 -10.08 16 23 H -0.28 -12.45 7.11 99.48 0.71 -11.75 16 24 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 25 C -0.05 -1.21 7.20 22.58 0.16 -1.04 16 26 H 0.09 0.51 8.14 -2.38 -0.02 0.49 16 27 H 0.09 0.41 8.08 -2.38 -0.02 0.39 16 28 H 0.08 0.55 8.08 -2.39 -0.02 0.53 16 29 H 0.18 1.73 7.60 -2.91 -0.02 1.71 16 30 H 0.44 2.12 9.11 -74.05 -0.67 1.44 16 31 H 0.11 4.38 7.64 -2.91 -0.02 4.36 16 32 H 0.08 1.92 6.90 -2.39 -0.02 1.91 16 33 H 0.07 2.47 7.09 -2.39 -0.02 2.45 16 34 H 0.08 2.15 5.81 -2.39 -0.01 2.14 16 35 H 0.07 3.69 6.07 -2.39 -0.01 3.67 16 36 H 0.05 2.25 7.67 -2.39 -0.02 2.23 16 37 H 0.02 0.95 8.14 -2.39 -0.02 0.93 16 38 H 0.27 14.62 8.31 -92.71 -0.77 13.85 16 39 H 0.16 3.07 5.31 -2.91 -0.02 3.06 16 Total: -1.00 -80.78 330.15 4.56 -76.22 By element: Atomic # 1 Polarization: 8.61 SS G_CDS: 0.42 Total: 9.03 kcal Atomic # 6 Polarization: 4.68 SS G_CDS: 4.59 Total: 9.27 kcal Atomic # 7 Polarization: -78.79 SS G_CDS: -2.04 Total: -80.84 kcal Atomic # 8 Polarization: -58.53 SS G_CDS: -0.43 Total: -58.96 kcal Atomic # 14 Polarization: 43.26 SS G_CDS: 2.03 Total: 45.28 kcal Total: -80.78 4.56 -76.22 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001611133258.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.558 kcal (2) G-P(sol) polarization free energy of solvation -80.780 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.338 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.559 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.221 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.779 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds