Wall clock time and date at job start Tue Mar 31 2020 07:19:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50693 * 109.47236 * 2 1 4 4 O 1.20761 * 120.00198 * 0.02562 * 3 2 1 5 5 C 1.50703 * 120.00218 * 179.97438 * 3 2 1 6 6 N 1.46495 * 109.47317 * 180.02562 * 5 3 2 7 7 C 1.34775 * 120.00172 * 179.97438 * 6 5 3 8 8 O 1.21287 * 119.99798 * 0.02562 * 7 6 5 9 9 C 1.50705 * 120.00246 * 179.97438 * 7 6 5 10 10 C 1.50695 * 109.46992 * 180.02562 * 9 7 6 11 11 C 1.38299 * 119.93247 * 90.00201 * 10 9 7 12 12 C 1.38101 * 120.07425 * 179.97438 * 11 10 9 13 13 C 1.38886 * 119.92536 * 0.02562 * 12 11 10 14 14 O 1.35750 * 120.06440 * 180.02562 * 13 12 11 15 15 C 1.34828 * 117.00075 * 5.53777 * 14 13 12 16 16 H 1.07993 * 120.00518 * 354.94289 * 15 14 13 17 17 C 1.38663 * 119.99751 * 174.94575 * 15 14 13 18 18 N 1.31556 * 120.00220 * 359.97438 * 17 15 14 19 19 Si 1.86795 * 119.99821 * 180.02562 * 17 15 14 20 20 H 1.48502 * 109.47448 * 89.99502 * 19 17 15 21 21 H 1.48501 * 109.47175 * 209.99712 * 19 17 15 22 22 H 1.48506 * 109.47415 * 329.99678 * 19 17 15 23 23 C 1.38874 * 119.86623 * 0.27854 * 13 12 11 24 24 C 1.38106 * 119.92542 * 359.44577 * 23 13 12 25 25 H 1.09005 * 109.46506 * 60.00502 * 1 2 3 26 26 H 1.08999 * 109.46712 * 179.97438 * 1 2 3 27 27 H 1.08993 * 109.47276 * 300.00492 * 1 2 3 28 28 H 1.08993 * 109.47276 * 239.99508 * 2 1 3 29 29 H 1.09005 * 109.46506 * 119.99498 * 2 1 3 30 30 H 1.08998 * 109.47278 * 59.99568 * 5 3 2 31 31 H 1.09005 * 109.46966 * 299.99768 * 5 3 2 32 32 H 0.97005 * 120.00223 * 0.02562 * 6 5 3 33 33 H 1.08998 * 109.46621 * 60.00483 * 9 7 6 34 34 H 1.08996 * 109.47266 * 300.00146 * 9 7 6 35 35 H 1.07999 * 119.96503 * 0.02562 * 11 10 9 36 36 H 1.07992 * 120.03608 * 180.02562 * 12 11 10 37 37 H 0.96996 * 120.00178 * 179.97438 * 18 17 15 38 38 H 1.07996 * 120.03745 * 179.72497 * 23 13 12 39 39 H 1.07997 * 119.96326 * 180.27708 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 8 1.2477 2.3387 0.0005 5 6 3.5140 1.6961 0.0006 6 7 3.7418 3.1433 0.0011 7 6 4.9995 3.6276 0.0022 8 8 5.9428 2.8652 0.0023 9 6 5.2338 5.1163 0.0021 10 6 6.7154 5.3916 0.0028 11 6 7.3945 5.5175 -1.1954 12 6 8.7521 5.7703 -1.1982 13 6 9.4357 5.8976 0.0041 14 8 10.7701 6.1466 0.0047 15 6 11.3510 6.3732 -1.1907 16 1 10.7755 6.2714 -2.0988 17 6 12.6876 6.7371 -1.2542 18 7 13.3887 6.8617 -0.1480 19 14 13.4922 7.0518 -2.9103 20 1 13.3417 8.4849 -3.2695 21 1 14.9352 6.7099 -2.8325 22 1 12.8394 6.2109 -3.9457 23 6 8.7522 5.7643 1.2057 24 6 7.3934 5.5171 1.2017 25 1 -0.3632 0.5138 -0.8901 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5139 0.8899 28 1 1.8934 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8901 30 1 3.9656 1.2572 -0.8891 31 1 3.9648 1.2575 0.8909 32 1 2.9873 3.7530 0.0014 33 1 4.7819 5.5552 0.8916 34 1 4.7836 5.5549 -0.8883 35 1 6.8623 5.4189 -2.1300 36 1 9.2817 5.8690 -2.1341 37 1 14.3237 7.1158 -0.1924 38 1 9.2818 5.8583 2.1422 39 1 6.8605 5.4178 2.1357 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000270736498.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:19:33 Heat of formation + Delta-G solvation = -83.316346 kcal Electronic energy + Delta-G solvation = -21648.719035 eV Core-core repulsion = 18136.117112 eV Total energy + Delta-G solvation = -3512.601923 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.130 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.45340 -39.44681 -38.65769 -36.47759 -34.51413 -33.39792 -32.44301 -31.44088 -30.10303 -28.94298 -26.46063 -25.11718 -24.03504 -21.92234 -21.06791 -20.38957 -19.80540 -17.93473 -17.49570 -16.91253 -16.46115 -16.41707 -15.82144 -15.31034 -14.69679 -14.52541 -14.43006 -14.13479 -13.87439 -13.55613 -13.41083 -13.27144 -12.88799 -12.83205 -12.65003 -12.37802 -12.21498 -11.79431 -11.66872 -11.46359 -11.23471 -10.81948 -10.72279 -10.58018 -10.39363 -10.19828 -9.75905 -9.28812 -9.26384 -8.78157 -8.09881 -7.11598 -6.40748 -3.99164 1.42068 2.28695 2.30580 2.74180 2.98837 3.16092 3.16649 3.21216 3.59349 4.00448 4.40208 4.58010 4.58177 4.71427 4.95668 5.01330 5.13111 5.15735 5.16735 5.30230 5.34318 5.36503 5.41824 5.43587 5.71053 5.71833 5.78196 5.90136 6.21287 6.26741 6.47008 6.75410 6.95052 6.96592 7.10177 7.28707 7.41456 7.42405 7.49982 7.89098 8.04711 8.27649 9.04985 9.76128 10.77445 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.039160 B = 0.002418 C = 0.002369 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 714.838597 B =11577.035996 C =11815.473812 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.172 4.172 3 C 0.351 3.649 4 O -0.450 6.450 5 C 0.067 3.933 6 N -0.737 5.737 7 C 0.511 3.489 8 O -0.520 6.520 9 C -0.079 4.079 10 C -0.170 4.170 11 C -0.056 4.056 12 C -0.232 4.232 13 C 0.157 3.843 14 O -0.178 6.178 15 C -0.390 4.390 16 H 0.092 0.908 17 C 0.038 3.962 18 N -0.863 5.863 19 Si 0.941 3.059 20 H -0.273 1.273 21 H -0.278 1.278 22 H -0.268 1.268 23 C -0.192 4.192 24 C -0.059 4.059 25 H 0.060 0.940 26 H 0.063 0.937 27 H 0.060 0.940 28 H 0.103 0.897 29 H 0.103 0.897 30 H 0.102 0.898 31 H 0.102 0.898 32 H 0.407 0.593 33 H 0.093 0.907 34 H 0.093 0.907 35 H 0.104 0.896 36 H 0.126 0.874 37 H 0.269 0.731 38 H 0.117 0.883 39 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.890 -10.101 -0.462 25.024 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.210 4.210 3 C 0.226 3.774 4 O -0.323 6.323 5 C -0.058 4.058 6 N -0.394 5.394 7 C 0.298 3.702 8 O -0.394 6.394 9 C -0.118 4.118 10 C -0.172 4.172 11 C -0.075 4.075 12 C -0.252 4.252 13 C 0.103 3.897 14 O -0.082 6.082 15 C -0.467 4.467 16 H 0.109 0.891 17 C -0.166 4.166 18 N -0.499 5.499 19 Si 0.766 3.234 20 H -0.199 1.199 21 H -0.203 1.203 22 H -0.192 1.192 23 C -0.211 4.211 24 C -0.078 4.078 25 H 0.079 0.921 26 H 0.082 0.918 27 H 0.079 0.921 28 H 0.121 0.879 29 H 0.121 0.879 30 H 0.120 0.880 31 H 0.120 0.880 32 H 0.243 0.757 33 H 0.112 0.888 34 H 0.111 0.889 35 H 0.122 0.878 36 H 0.144 0.856 37 H 0.079 0.921 38 H 0.135 0.865 39 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -22.183 -10.094 -0.218 24.372 hybrid contribution 0.117 0.224 -0.890 0.925 sum -22.065 -9.870 -1.109 24.198 Atomic orbital electron populations 1.21600 0.93486 1.02045 1.03128 1.22018 0.98522 0.95235 1.05249 1.24863 0.90574 0.91696 0.70231 1.90392 1.58663 1.47663 1.35577 1.21656 0.94841 0.84252 1.05054 1.45926 1.09100 1.06532 1.77878 1.21117 0.81721 0.91964 0.75383 1.90749 1.41627 1.59707 1.47347 1.20390 0.96259 0.91123 1.04078 1.18629 0.92852 1.11937 0.93750 1.20509 0.93794 0.97007 0.96166 1.21103 0.94650 1.11020 0.98397 1.19391 0.84904 0.92134 0.93280 1.83976 1.15121 1.76146 1.32946 1.21327 0.94253 1.47936 0.83160 0.89090 1.25290 0.95538 0.96525 0.99252 1.70040 1.08873 1.44002 1.26942 0.85711 0.78543 0.78939 0.80223 1.19909 1.20295 1.19223 1.20152 0.93774 1.10944 0.96219 1.20402 0.93315 0.97746 0.96309 0.92085 0.91840 0.92073 0.87930 0.87924 0.88041 0.88035 0.75682 0.88830 0.88871 0.87824 0.85584 0.92078 0.86539 0.87375 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.75 9.20 37.16 0.34 -0.40 16 2 C -0.17 -0.76 6.36 -27.88 -0.18 -0.93 16 3 C 0.35 2.52 7.23 -29.04 -0.21 2.31 16 4 O -0.45 -4.49 15.29 6.00 0.09 -4.40 16 5 C 0.07 0.55 6.09 -5.19 -0.03 0.52 16 6 N -0.74 -7.66 5.53 -61.47 -0.34 -8.00 16 7 C 0.51 7.10 7.82 -10.98 -0.09 7.02 16 8 O -0.52 -9.59 16.03 5.55 0.09 -9.50 16 9 C -0.08 -1.02 5.83 -29.04 -0.17 -1.19 16 10 C -0.17 -3.03 4.38 -104.58 -0.46 -3.48 16 11 C -0.06 -1.09 9.69 -39.61 -0.38 -1.47 16 12 C -0.23 -5.29 9.17 -39.39 -0.36 -5.65 16 13 C 0.16 3.95 6.65 -39.11 -0.26 3.69 16 14 O -0.18 -5.25 9.76 0.05 0.00 -5.25 16 15 C -0.39 -11.18 9.49 30.89 0.29 -10.88 16 16 H 0.09 2.42 5.20 -52.49 -0.27 2.14 16 17 C 0.04 1.06 5.49 -17.51 -0.10 0.97 16 18 N -0.86 -25.76 13.67 55.48 0.76 -25.00 16 19 Si 0.94 20.91 29.55 -169.99 -5.02 15.88 16 20 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 21 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 22 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 23 C -0.19 -4.25 9.99 -39.39 -0.39 -4.64 16 24 C -0.06 -1.12 9.69 -39.61 -0.38 -1.50 16 25 H 0.06 0.37 8.10 -51.93 -0.42 -0.05 16 26 H 0.06 0.23 8.14 -51.93 -0.42 -0.19 16 27 H 0.06 0.37 8.10 -51.93 -0.42 -0.05 16 28 H 0.10 0.30 8.14 -51.93 -0.42 -0.13 16 29 H 0.10 0.29 8.14 -51.93 -0.42 -0.13 16 30 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.10 0.81 8.14 -51.93 -0.42 0.38 16 32 H 0.41 3.65 7.44 -40.82 -0.30 3.35 16 33 H 0.09 0.98 8.08 -51.93 -0.42 0.56 16 34 H 0.09 1.00 8.08 -51.93 -0.42 0.58 16 35 H 0.10 1.71 8.06 -52.49 -0.42 1.29 16 36 H 0.13 2.85 5.64 -52.49 -0.30 2.56 16 37 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 38 H 0.12 2.48 8.06 -52.49 -0.42 2.06 16 39 H 0.11 1.70 8.06 -52.49 -0.42 1.28 16 LS Contribution 342.08 15.07 5.16 5.16 Total: -1.00 -35.45 342.08 -6.71 -42.17 By element: Atomic # 1 Polarization: 9.66 SS G_CDS: -5.07 Total: 4.59 kcal Atomic # 6 Polarization: -13.28 SS G_CDS: -2.38 Total: -15.66 kcal Atomic # 7 Polarization: -33.42 SS G_CDS: 0.42 Total: -33.00 kcal Atomic # 8 Polarization: -19.32 SS G_CDS: 0.18 Total: -19.14 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.88 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -35.45 -6.71 -42.17 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000270736498.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.150 kcal (2) G-P(sol) polarization free energy of solvation -35.453 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.602 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.714 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.167 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.316 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds