Wall clock time and date at job start Tue Mar 31 2020 06:09:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30994 * 1 3 3 C 1.50703 * 120.00088 * 2 1 4 4 N 1.46502 * 109.46823 * 125.00205 * 3 2 1 5 5 C 1.46498 * 120.00220 * 85.02152 * 4 3 2 6 6 C 1.50707 * 109.46965 * 95.46888 * 5 4 3 7 7 H 1.07998 * 120.00296 * 0.02562 * 6 5 4 8 8 C 1.37880 * 119.99873 * 180.02562 * 6 5 4 9 9 N 1.31512 * 119.99780 * 0.02562 * 8 6 5 10 10 Si 1.86800 * 119.99924 * 180.02562 * 8 6 5 11 11 H 1.48501 * 109.46763 * 90.00152 * 10 8 6 12 12 H 1.48500 * 109.46986 * 210.00112 * 10 8 6 13 13 H 1.48505 * 109.46982 * 330.00215 * 10 8 6 14 14 C 1.34777 * 119.99858 * 265.01790 * 4 3 2 15 15 O 1.21697 * 119.99918 * 5.61647 * 14 4 3 16 16 C 1.46658 * 119.99858 * 185.61698 * 14 4 3 17 17 O 1.35386 * 126.11985 * 354.82274 * 16 14 4 18 18 C 1.34399 * 109.47890 * 179.82507 * 17 16 14 19 19 C 1.33897 * 108.55961 * 0.36741 * 18 17 16 20 20 C 1.35185 * 126.11521 * 175.13621 * 16 14 4 21 21 C 1.50724 * 130.57931 * 0.25362 * 20 16 14 22 22 C 1.53685 * 107.43930 * 164.21341 * 21 20 16 23 23 O 1.42894 * 109.97381 * 48.23488 * 22 21 20 24 24 C 1.43514 * 114.76474 * 287.60413 * 23 22 21 25 25 H 1.08005 * 119.99907 * 359.97438 * 1 2 3 26 26 H 1.08007 * 120.00288 * 180.02562 * 1 2 3 27 27 H 1.07996 * 119.99945 * 180.02562 * 2 1 3 28 28 H 1.08997 * 109.47183 * 5.00318 * 3 2 1 29 29 H 1.08999 * 109.46751 * 245.00126 * 3 2 1 30 30 H 1.08995 * 109.47296 * 215.46635 * 5 4 3 31 31 H 1.08997 * 109.47007 * 335.47163 * 5 4 3 32 32 H 0.97000 * 119.99704 * 179.97438 * 9 8 6 33 33 H 1.08003 * 125.72392 * 180.12025 * 18 17 16 34 34 H 1.08997 * 109.86650 * 283.69471 * 21 20 16 35 35 H 1.08998 * 109.86011 * 44.73345 * 21 20 16 36 36 H 1.09001 * 109.38560 * 288.08195 * 22 21 20 37 37 H 1.08999 * 109.30135 * 168.34049 * 22 21 20 38 38 H 1.08996 * 109.82725 * 291.95627 * 24 23 22 39 39 H 1.09002 * 109.87815 * 171.05412 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9938 1.3318 1.1314 5 6 4.3218 0.7271 1.0023 6 6 5.3237 1.7898 0.6305 7 1 5.0033 2.8133 0.5036 8 6 6.6494 1.4553 0.4524 9 7 7.0395 0.2089 0.6064 10 14 7.8913 2.7727 -0.0076 11 1 8.4642 3.3656 1.2274 12 1 8.9792 2.1665 -0.8165 13 1 7.2177 3.8331 -0.7995 14 6 2.6278 1.9128 2.2912 15 8 1.4913 2.3240 2.4337 16 6 3.5992 2.0494 3.3814 17 8 4.8584 1.5523 3.3953 18 6 5.4555 1.8767 4.5549 19 6 4.5893 2.5754 5.2994 20 6 3.3954 2.6893 4.5547 21 6 2.1813 3.4124 5.0791 22 6 2.3714 3.5933 6.5934 23 8 3.6751 4.1125 6.8631 24 6 4.7462 3.1764 6.6729 25 1 -0.5400 0.9354 0.0004 26 1 -0.5401 -0.9353 0.0004 27 1 1.8499 -0.9353 -0.0004 28 1 1.3586 2.1316 0.0896 29 1 2.6212 1.4026 -0.9314 30 1 4.6084 0.2736 1.9510 31 1 4.2988 -0.0379 0.2261 32 1 7.9721 -0.0265 0.4808 33 1 6.4635 1.6141 4.8402 34 1 2.0937 4.3864 4.5979 35 1 1.2862 2.8211 4.8863 36 1 2.2557 2.6300 7.0902 37 1 1.6203 4.2874 6.9704 38 1 4.6904 2.3924 7.4281 39 1 5.7047 3.6906 6.7441 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000359403274.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:41 Heat of formation + Delta-G solvation = -36.651766 kcal Electronic energy + Delta-G solvation = -23961.600110 eV Core-core repulsion = 20451.021715 eV Total energy + Delta-G solvation = -3510.578395 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.130 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.24251 -38.92957 -38.30166 -35.62168 -33.55523 -33.08223 -32.17293 -31.66686 -28.95642 -27.49932 -25.98803 -25.75761 -23.41044 -22.99463 -21.76415 -19.64150 -19.25790 -18.71122 -16.99712 -16.57245 -16.07560 -15.96623 -15.73843 -15.32398 -14.96716 -14.62350 -14.53522 -14.32850 -13.78664 -13.36901 -13.23210 -12.78447 -12.70809 -12.41236 -12.33886 -11.93790 -11.50343 -11.34228 -11.21606 -11.05825 -10.83447 -10.78067 -10.62849 -10.18695 -9.82919 -9.75555 -9.47168 -9.07967 -8.97263 -8.53429 -8.18122 -7.75229 -6.15781 -4.20641 1.72180 2.51942 2.67737 3.22308 3.29340 3.33375 3.41363 3.78749 3.89120 4.05956 4.35016 4.80566 5.00099 5.16493 5.18844 5.22871 5.28973 5.35902 5.46191 5.50745 5.56446 5.65902 5.82632 5.92930 6.08701 6.12353 6.14411 6.26159 6.37316 6.44610 6.61327 6.77965 6.89150 7.07114 7.18294 7.25548 7.41378 7.58955 7.77319 8.06447 8.17220 8.73497 8.87129 9.44686 10.91709 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.011095 B = 0.007589 C = 0.004912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2523.135728 B = 3688.731913 C = 5698.590932 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.159 4.159 3 C 0.144 3.856 4 N -0.583 5.583 5 C 0.233 3.767 6 C -0.525 4.525 7 H 0.057 0.943 8 C 0.069 3.931 9 N -0.891 5.891 10 Si 0.891 3.109 11 H -0.279 1.279 12 H -0.285 1.285 13 H -0.274 1.274 14 C 0.597 3.403 15 O -0.552 6.552 16 C -0.036 4.036 17 O -0.107 6.107 18 C 0.010 3.990 19 C -0.256 4.256 20 C -0.113 4.113 21 C -0.079 4.079 22 C 0.065 3.935 23 O -0.383 6.383 24 C 0.141 3.859 25 H 0.096 0.904 26 H 0.093 0.907 27 H 0.108 0.892 28 H 0.080 0.920 29 H 0.088 0.912 30 H 0.051 0.949 31 H 0.040 0.960 32 H 0.263 0.737 33 H 0.200 0.800 34 H 0.082 0.918 35 H 0.092 0.908 36 H 0.051 0.949 37 H 0.095 0.905 38 H 0.060 0.940 39 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.180 1.433 7.843 10.087 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.178 4.178 3 C 0.021 3.979 4 N -0.311 5.311 5 C 0.114 3.886 6 C -0.564 4.564 7 H 0.076 0.924 8 C -0.133 4.133 9 N -0.530 5.530 10 Si 0.719 3.281 11 H -0.206 1.206 12 H -0.211 1.211 13 H -0.199 1.199 14 C 0.386 3.614 15 O -0.434 6.434 16 C -0.089 4.089 17 O 0.000 6.000 18 C -0.061 4.061 19 C -0.257 4.257 20 C -0.116 4.116 21 C -0.117 4.117 22 C -0.012 4.012 23 O -0.302 6.302 24 C 0.065 3.935 25 H 0.114 0.886 26 H 0.111 0.889 27 H 0.126 0.874 28 H 0.099 0.901 29 H 0.106 0.894 30 H 0.068 0.932 31 H 0.058 0.942 32 H 0.073 0.927 33 H 0.217 0.783 34 H 0.101 0.899 35 H 0.111 0.889 36 H 0.069 0.931 37 H 0.113 0.887 38 H 0.078 0.922 39 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -6.427 1.525 7.663 10.117 hybrid contribution 1.095 0.312 -0.377 1.199 sum -5.333 1.837 7.285 9.214 Atomic orbital electron populations 1.23751 0.95804 1.01428 1.01525 1.23381 0.96142 0.99320 0.98961 1.20486 0.92235 0.95205 0.89969 1.48177 1.17434 1.54761 1.10735 1.19672 0.76131 0.93966 0.98808 1.21359 0.92595 0.94746 1.47687 0.92440 1.24833 0.98059 0.95358 0.95099 1.69923 1.16957 1.16802 1.49272 0.86598 0.80996 0.81853 0.78650 1.20551 1.21088 1.19874 1.16656 0.85064 0.78400 0.81324 1.90743 1.18613 1.52540 1.81518 1.21319 0.85388 1.04993 0.97161 1.85011 1.22720 1.58649 1.33621 1.23664 0.98618 0.98970 0.84853 1.20799 0.95702 1.08513 1.00721 1.19978 0.96848 1.01447 0.93311 1.20749 0.95250 1.00421 0.95234 1.22650 0.84570 0.99227 0.94715 1.87925 1.14850 1.38770 1.88620 1.20930 0.90802 0.91535 0.90280 0.88581 0.88896 0.87362 0.90123 0.89375 0.93163 0.94236 0.92687 0.78316 0.89944 0.88948 0.93099 0.88669 0.92166 0.88133 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.68 14.32 29.02 0.42 -2.26 16 2 C -0.16 -2.60 9.84 -36.02 -0.35 -2.95 16 3 C 0.14 2.65 5.84 -5.19 -0.03 2.62 16 4 N -0.58 -12.63 2.45 -177.99 -0.44 -13.06 16 5 C 0.23 5.62 4.77 -5.19 -0.02 5.60 16 6 C -0.53 -13.73 8.07 -34.44 -0.28 -14.01 16 7 H 0.06 1.56 7.81 -52.49 -0.41 1.15 16 8 C 0.07 1.82 5.46 -17.82 -0.10 1.72 16 9 N -0.89 -24.28 13.29 55.43 0.74 -23.54 16 10 Si 0.89 20.70 29.54 -169.99 -5.02 15.68 16 11 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 12 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 13 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 14 C 0.60 13.20 7.59 -12.86 -0.10 13.11 16 15 O -0.55 -12.34 15.16 5.19 0.08 -12.26 16 16 C -0.04 -0.77 6.66 -37.27 -0.25 -1.02 16 17 O -0.11 -2.33 6.51 2.36 0.02 -2.31 16 18 C 0.01 0.18 12.06 29.21 0.35 0.53 16 19 C -0.26 -4.29 6.04 -105.01 -0.63 -4.93 16 20 C -0.11 -2.13 6.02 -104.58 -0.63 -2.76 16 21 C -0.08 -1.27 5.75 -27.52 -0.16 -1.43 16 22 C 0.07 0.86 6.75 37.51 0.25 1.11 16 23 O -0.38 -5.67 10.70 -35.23 -0.38 -6.05 16 24 C 0.14 1.89 7.27 36.03 0.26 2.15 16 25 H 0.10 1.34 7.84 -52.48 -0.41 0.92 16 26 H 0.09 1.14 8.06 -52.48 -0.42 0.72 16 27 H 0.11 1.76 8.06 -52.49 -0.42 1.34 16 28 H 0.08 1.46 7.01 -51.93 -0.36 1.10 16 29 H 0.09 1.58 8.11 -51.93 -0.42 1.16 16 30 H 0.05 1.29 5.67 -51.93 -0.29 0.99 16 31 H 0.04 0.98 8.03 -51.93 -0.42 0.57 16 32 H 0.26 6.85 8.31 -40.82 -0.34 6.51 16 33 H 0.20 2.74 8.06 -52.48 -0.42 2.32 16 34 H 0.08 1.35 8.14 -51.93 -0.42 0.93 16 35 H 0.09 1.49 7.56 -51.93 -0.39 1.09 16 36 H 0.05 0.62 8.08 -51.93 -0.42 0.20 16 37 H 0.10 1.01 8.14 -51.93 -0.42 0.59 16 38 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 39 H 0.10 1.16 8.14 -51.93 -0.42 0.74 16 LS Contribution 330.57 15.07 4.98 4.98 Total: -1.00 -30.14 330.57 -6.52 -36.66 By element: Atomic # 1 Polarization: 7.64 SS G_CDS: -5.22 Total: 2.41 kcal Atomic # 6 Polarization: -1.23 SS G_CDS: -1.27 Total: -2.50 kcal Atomic # 7 Polarization: -36.91 SS G_CDS: 0.30 Total: -36.61 kcal Atomic # 8 Polarization: -20.34 SS G_CDS: -0.28 Total: -20.62 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -5.02 Total: 15.68 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -30.14 -6.52 -36.66 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359403274.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.005 kcal (2) G-P(sol) polarization free energy of solvation -30.139 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.134 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.518 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.657 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.652 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds