Wall clock time and date at job start Tue Mar 31 2020 06:09:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30994 * 1 3 3 C 1.50703 * 120.00088 * 2 1 4 4 N 1.46502 * 109.46823 * 125.00205 * 3 2 1 5 5 C 1.46498 * 120.00220 * 85.02152 * 4 3 2 6 6 C 1.50707 * 109.46965 * 95.46888 * 5 4 3 7 7 H 1.07998 * 120.00296 * 0.02562 * 6 5 4 8 8 C 1.37880 * 119.99873 * 180.02562 * 6 5 4 9 9 N 1.31512 * 119.99780 * 0.02562 * 8 6 5 10 10 Si 1.86800 * 119.99924 * 180.02562 * 8 6 5 11 11 H 1.48501 * 109.46763 * 90.00152 * 10 8 6 12 12 H 1.48500 * 109.46986 * 210.00112 * 10 8 6 13 13 H 1.48505 * 109.46982 * 330.00215 * 10 8 6 14 14 C 1.34777 * 119.99858 * 265.01790 * 4 3 2 15 15 O 1.21697 * 119.99918 * 5.61647 * 14 4 3 16 16 C 1.46658 * 119.99858 * 185.61698 * 14 4 3 17 17 O 1.35386 * 126.11985 * 354.82274 * 16 14 4 18 18 C 1.34399 * 109.47890 * 179.82507 * 17 16 14 19 19 C 1.33897 * 108.55961 * 0.36741 * 18 17 16 20 20 C 1.35185 * 126.11521 * 175.13621 * 16 14 4 21 21 C 1.50724 * 130.57931 * 0.25362 * 20 16 14 22 22 C 1.53685 * 107.43930 * 164.21341 * 21 20 16 23 23 O 1.42894 * 109.97381 * 48.23488 * 22 21 20 24 24 C 1.43514 * 114.76474 * 287.60413 * 23 22 21 25 25 H 1.08005 * 119.99907 * 359.97438 * 1 2 3 26 26 H 1.08007 * 120.00288 * 180.02562 * 1 2 3 27 27 H 1.07996 * 119.99945 * 180.02562 * 2 1 3 28 28 H 1.08997 * 109.47183 * 5.00318 * 3 2 1 29 29 H 1.08999 * 109.46751 * 245.00126 * 3 2 1 30 30 H 1.08995 * 109.47296 * 215.46635 * 5 4 3 31 31 H 1.08997 * 109.47007 * 335.47163 * 5 4 3 32 32 H 0.97000 * 119.99704 * 179.97438 * 9 8 6 33 33 H 1.08003 * 125.72392 * 180.12025 * 18 17 16 34 34 H 1.08997 * 109.86650 * 283.69471 * 21 20 16 35 35 H 1.08998 * 109.86011 * 44.73345 * 21 20 16 36 36 H 1.09001 * 109.38560 * 288.08195 * 22 21 20 37 37 H 1.08999 * 109.30135 * 168.34049 * 22 21 20 38 38 H 1.08996 * 109.82725 * 291.95627 * 24 23 22 39 39 H 1.09002 * 109.87815 * 171.05412 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9938 1.3318 1.1314 5 6 4.3218 0.7271 1.0023 6 6 5.3237 1.7898 0.6305 7 1 5.0033 2.8133 0.5036 8 6 6.6494 1.4553 0.4524 9 7 7.0395 0.2089 0.6064 10 14 7.8913 2.7727 -0.0076 11 1 8.4642 3.3656 1.2274 12 1 8.9792 2.1665 -0.8165 13 1 7.2177 3.8331 -0.7995 14 6 2.6278 1.9128 2.2912 15 8 1.4913 2.3240 2.4337 16 6 3.5992 2.0494 3.3814 17 8 4.8584 1.5523 3.3953 18 6 5.4555 1.8767 4.5549 19 6 4.5893 2.5754 5.2994 20 6 3.3954 2.6893 4.5547 21 6 2.1813 3.4124 5.0791 22 6 2.3714 3.5933 6.5934 23 8 3.6751 4.1125 6.8631 24 6 4.7462 3.1764 6.6729 25 1 -0.5400 0.9354 0.0004 26 1 -0.5401 -0.9353 0.0004 27 1 1.8499 -0.9353 -0.0004 28 1 1.3586 2.1316 0.0896 29 1 2.6212 1.4026 -0.9314 30 1 4.6084 0.2736 1.9510 31 1 4.2988 -0.0379 0.2261 32 1 7.9721 -0.0265 0.4808 33 1 6.4635 1.6141 4.8402 34 1 2.0937 4.3864 4.5979 35 1 1.2862 2.8211 4.8863 36 1 2.2557 2.6300 7.0902 37 1 1.6203 4.2874 6.9704 38 1 4.6904 2.3924 7.4281 39 1 5.7047 3.6906 6.7441 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000359403274.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:41 Heat of formation + Delta-G solvation = -54.525247 kcal Electronic energy + Delta-G solvation = -23962.375162 eV Core-core repulsion = 20451.021715 eV Total energy + Delta-G solvation = -3511.353447 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.130 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -43.69290 -40.58032 -39.46466 -37.25795 -35.19031 -34.48450 -33.92383 -32.90735 -30.34374 -29.38032 -27.37529 -27.03332 -25.15841 -24.40001 -23.24856 -20.94877 -20.60314 -20.24175 -18.73566 -18.28463 -17.56987 -17.28971 -17.23860 -16.78635 -16.34317 -16.18857 -15.95486 -15.71341 -15.25024 -14.93566 -14.48513 -14.28589 -14.20414 -14.04449 -13.59239 -13.54928 -13.09997 -12.94803 -12.79190 -12.58418 -12.40255 -12.23524 -12.05693 -11.85392 -11.72338 -11.29846 -10.75738 -10.59206 -10.36060 -10.33178 -9.74302 -9.37712 -8.18241 -6.29800 0.17647 1.24249 1.32550 1.37669 1.40051 1.48959 1.96017 2.15605 2.38361 2.51294 2.86630 3.12818 3.54054 3.62735 3.84754 3.99917 4.02594 4.17431 4.26640 4.39344 4.39918 4.50556 4.54660 4.73900 4.74319 4.79535 4.86623 4.90527 4.99252 5.04726 5.09971 5.30192 5.44898 5.63400 5.65214 5.72236 5.80783 6.05221 6.06831 6.19576 6.40464 6.77994 7.09989 7.38838 8.88519 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.011095 B = 0.007589 C = 0.004912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2523.135728 B = 3688.731913 C = 5698.590932 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.185 4.185 3 C 0.141 3.859 4 N -0.588 5.588 5 C 0.252 3.748 6 C -0.531 4.531 7 H 0.041 0.959 8 C 0.032 3.968 9 N -0.915 5.915 10 Si 0.947 3.053 11 H -0.273 1.273 12 H -0.278 1.278 13 H -0.277 1.277 14 C 0.591 3.409 15 O -0.564 6.564 16 C -0.081 4.081 17 O -0.140 6.140 18 C 0.004 3.996 19 C -0.251 4.251 20 C -0.113 4.113 21 C -0.081 4.081 22 C 0.069 3.931 23 O -0.395 6.395 24 C 0.140 3.860 25 H 0.101 0.899 26 H 0.120 0.880 27 H 0.105 0.895 28 H 0.081 0.919 29 H 0.085 0.915 30 H 0.036 0.964 31 H 0.025 0.975 32 H 0.267 0.733 33 H 0.233 0.767 34 H 0.075 0.925 35 H 0.088 0.912 36 H 0.064 0.936 37 H 0.124 0.876 38 H 0.088 0.912 39 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.150 2.057 9.344 11.373 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.204 4.204 3 C 0.020 3.980 4 N -0.316 5.316 5 C 0.132 3.868 6 C -0.569 4.569 7 H 0.059 0.941 8 C -0.169 4.169 9 N -0.555 5.555 10 Si 0.772 3.228 11 H -0.199 1.199 12 H -0.203 1.203 13 H -0.202 1.202 14 C 0.380 3.620 15 O -0.447 6.447 16 C -0.133 4.133 17 O -0.034 6.034 18 C -0.066 4.066 19 C -0.253 4.253 20 C -0.116 4.116 21 C -0.118 4.118 22 C -0.007 4.007 23 O -0.314 6.314 24 C 0.064 3.936 25 H 0.120 0.880 26 H 0.138 0.862 27 H 0.123 0.877 28 H 0.100 0.900 29 H 0.103 0.897 30 H 0.053 0.947 31 H 0.043 0.957 32 H 0.076 0.924 33 H 0.249 0.751 34 H 0.093 0.907 35 H 0.106 0.894 36 H 0.083 0.917 37 H 0.141 0.859 38 H 0.106 0.894 39 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -6.414 2.151 9.161 11.388 hybrid contribution 1.027 0.120 -0.807 1.312 sum -5.387 2.271 8.354 10.196 Atomic orbital electron populations 1.24001 0.94955 1.02942 0.97840 1.23204 0.96883 0.98000 1.02323 1.20612 0.91913 0.96659 0.88866 1.48188 1.17084 1.54701 1.11642 1.19249 0.77095 0.93127 0.97306 1.21408 0.93447 0.94266 1.47793 0.94075 1.25443 0.99429 0.97062 0.94941 1.70002 1.17469 1.18143 1.49840 0.85735 0.78995 0.79521 0.78506 1.19888 1.20278 1.20177 1.16879 0.85342 0.78145 0.81641 1.90700 1.18977 1.53185 1.81872 1.21386 0.85843 1.07758 0.98266 1.84935 1.23139 1.59708 1.35647 1.24431 0.99911 0.98528 0.83757 1.21241 0.94341 1.07685 1.02040 1.20509 0.98505 0.99996 0.92613 1.20859 0.93994 0.99429 0.97557 1.22759 0.84760 1.00885 0.92314 1.87920 1.15508 1.39599 1.88364 1.21233 0.91493 0.92289 0.88549 0.88037 0.86233 0.87672 0.90048 0.89671 0.94662 0.95668 0.92392 0.75127 0.90673 0.89369 0.91719 0.85856 0.89411 0.85964 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.34 14.32 67.79 0.97 -3.37 16 2 C -0.19 -6.09 9.84 25.65 0.25 -5.84 16 3 C 0.14 5.38 5.84 85.63 0.50 5.88 16 4 N -0.59 -26.51 2.45 -835.24 -2.05 -28.56 16 5 C 0.25 12.68 4.77 85.64 0.41 13.09 16 6 C -0.53 -28.49 8.07 25.60 0.21 -28.28 16 7 H 0.04 2.30 7.81 -2.91 -0.02 2.28 16 8 C 0.03 1.68 5.46 84.66 0.46 2.15 16 9 N -0.92 -50.33 13.29 21.45 0.28 -50.05 16 10 Si 0.95 42.44 29.54 68.60 2.03 44.46 16 11 H -0.27 -11.92 7.11 99.48 0.71 -11.22 16 12 H -0.28 -12.04 7.11 99.48 0.71 -11.33 16 13 H -0.28 -12.44 7.11 99.48 0.71 -11.74 16 14 C 0.59 27.01 7.59 86.44 0.66 27.67 16 15 O -0.56 -25.80 15.16 -4.34 -0.07 -25.87 16 16 C -0.08 -3.54 6.66 23.77 0.16 -3.38 16 17 O -0.14 -6.21 6.51 -14.47 -0.09 -6.30 16 18 C 0.00 0.13 12.06 66.83 0.81 0.94 16 19 C -0.25 -8.06 6.04 -20.12 -0.12 -8.18 16 20 C -0.11 -4.24 6.02 -19.84 -0.12 -4.36 16 21 C -0.08 -2.54 5.75 30.09 0.17 -2.37 16 22 C 0.07 1.64 6.75 72.21 0.49 2.13 16 23 O -0.40 -10.48 10.70 -148.98 -1.59 -12.08 16 24 C 0.14 3.31 7.27 71.25 0.52 3.83 16 25 H 0.10 2.66 7.84 -2.91 -0.02 2.64 16 26 H 0.12 2.63 8.06 -2.91 -0.02 2.60 16 27 H 0.11 3.50 8.06 -2.91 -0.02 3.47 16 28 H 0.08 3.03 7.01 -2.39 -0.02 3.01 16 29 H 0.09 3.19 8.11 -2.39 -0.02 3.18 16 30 H 0.04 1.90 5.67 -2.39 -0.01 1.89 16 31 H 0.03 1.32 8.03 -2.39 -0.02 1.30 16 32 H 0.27 13.87 8.31 -92.71 -0.77 13.10 16 33 H 0.23 5.95 8.06 -2.91 -0.02 5.93 16 34 H 0.07 2.44 8.14 -2.39 -0.02 2.42 16 35 H 0.09 2.81 7.56 -2.39 -0.02 2.80 16 36 H 0.06 1.37 8.08 -2.39 -0.02 1.35 16 37 H 0.12 2.22 8.14 -2.39 -0.02 2.20 16 38 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 39 H 0.12 2.36 8.14 -2.39 -0.02 2.34 16 Total: -1.00 -65.56 330.57 4.92 -60.65 By element: Atomic # 1 Polarization: 16.79 SS G_CDS: 1.05 Total: 17.84 kcal Atomic # 6 Polarization: -5.46 SS G_CDS: 5.36 Total: -0.10 kcal Atomic # 7 Polarization: -76.84 SS G_CDS: -1.77 Total: -78.61 kcal Atomic # 8 Polarization: -42.49 SS G_CDS: -1.75 Total: -44.25 kcal Atomic # 14 Polarization: 42.44 SS G_CDS: 2.03 Total: 44.46 kcal Total: -65.56 4.92 -60.65 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359403274.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.121 kcal (2) G-P(sol) polarization free energy of solvation -65.562 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.441 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.916 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.647 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.525 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds