Wall clock time and date at job start Tue Mar 31 2020 06:41:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81408 * 1 3 3 O 1.42099 * 108.57530 * 2 1 4 4 O 1.42089 * 108.57950 * 228.97740 * 2 1 3 5 5 C 1.81399 * 101.92083 * 114.48826 * 2 1 3 6 6 C 1.53000 * 109.47167 * 173.77220 * 5 2 1 7 7 H 1.08993 * 109.45414 * 176.93304 * 6 5 2 8 8 C 1.53036 * 109.46379 * 56.95513 * 6 5 2 9 9 C 1.53110 * 109.28097 * 180.80684 * 8 6 5 10 10 C 1.53118 * 109.16134 * 57.65643 * 9 8 6 11 11 C 1.53033 * 109.27678 * 302.34807 * 10 9 8 12 12 N 1.46841 * 109.52537 * 59.17764 * 11 10 9 13 13 C 1.46906 * 110.99919 * 174.16040 * 12 11 10 14 14 C 1.52996 * 109.46987 * 300.17904 * 13 12 11 15 15 H 1.08997 * 109.47338 * 60.00337 * 14 13 12 16 16 O 1.42897 * 109.47630 * 299.99953 * 14 13 12 17 17 C 1.50700 * 109.47060 * 180.02562 * 14 13 12 18 18 H 1.08007 * 119.99906 * 359.97438 * 17 14 13 19 19 C 1.37870 * 120.00398 * 180.02562 * 17 14 13 20 20 N 1.31513 * 120.00431 * 180.02562 * 19 17 14 21 21 Si 1.86802 * 119.99931 * 359.97438 * 19 17 14 22 22 H 1.48501 * 109.47269 * 89.99990 * 21 19 17 23 23 H 1.48504 * 109.47361 * 209.99997 * 21 19 17 24 24 H 1.48500 * 109.46866 * 330.00328 * 21 19 17 25 25 H 1.08997 * 109.47069 * 305.51295 * 1 2 3 26 26 H 1.09001 * 109.46953 * 65.51551 * 1 2 3 27 27 H 1.08998 * 109.46990 * 185.50972 * 1 2 3 28 28 H 1.08998 * 109.47358 * 53.77442 * 5 2 1 29 29 H 1.09001 * 109.47234 * 293.77197 * 5 2 1 30 30 H 1.09004 * 109.50433 * 300.75362 * 8 6 5 31 31 H 1.09003 * 109.50042 * 60.82492 * 8 6 5 32 32 H 1.09003 * 109.52223 * 177.56023 * 9 8 6 33 33 H 1.09004 * 109.52572 * 297.68575 * 9 8 6 34 34 H 1.09001 * 109.50112 * 62.28869 * 10 9 8 35 35 H 1.09007 * 109.50531 * 182.36639 * 10 9 8 36 36 H 1.09007 * 109.46039 * 299.15631 * 11 10 9 37 37 H 1.09003 * 109.46382 * 179.19844 * 11 10 9 38 38 H 1.08997 * 109.46807 * 180.17915 * 13 12 11 39 39 H 1.08996 * 109.47191 * 60.18104 * 13 12 11 40 40 H 0.96703 * 114.00016 * 300.00525 * 16 14 13 41 41 H 0.97002 * 120.00052 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8141 0.0000 0.0000 3 8 2.2667 1.3470 0.0000 4 8 2.2668 -0.8840 -1.0161 5 6 2.1888 -0.7357 1.6152 6 6 3.6972 -0.9622 1.7349 7 1 3.9280 -1.3534 2.7257 8 6 4.4302 0.3651 1.5272 9 6 5.9398 0.1301 1.6278 10 6 6.3564 -0.9136 0.5877 11 6 5.5676 -2.2037 0.8226 12 7 4.1296 -1.9263 0.7152 13 6 3.3465 -3.1665 0.7976 14 6 3.7553 -4.1043 -0.3401 15 1 4.8164 -4.3383 -0.2546 16 8 3.5077 -3.4671 -1.5950 17 6 2.9516 -5.3763 -0.2559 18 1 2.2224 -5.5033 0.5307 19 6 3.1478 -6.3783 -1.1823 20 7 2.4460 -7.4882 -1.1092 21 14 4.4094 -6.1590 -2.5424 22 1 5.7267 -6.6671 -2.0823 23 1 3.9786 -6.9175 -3.7442 24 1 4.5257 -4.7180 -2.8819 25 1 -0.3633 0.5969 0.8365 26 1 -0.3633 0.4259 -0.9353 27 1 -0.3633 -1.0229 0.0987 28 1 1.6696 -1.6895 1.7093 29 1 1.8585 -0.0627 2.4065 30 1 4.1888 0.7638 0.5419 31 1 4.1200 1.0758 2.2933 32 1 6.4674 1.0647 1.4376 33 1 6.1866 -0.2308 2.6264 34 1 6.1454 -0.5350 -0.4124 35 1 7.4232 -1.1162 0.6826 36 1 5.7898 -2.5892 1.8178 37 1 5.8515 -2.9443 0.0749 38 1 2.2854 -2.9325 0.7121 39 1 3.5354 -3.6525 1.7547 40 1 2.5814 -3.2299 -1.7396 41 1 2.5838 -8.1930 -1.7613 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000930643721.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:41:40 Heat of formation + Delta-G solvation = -104.830824 kcal Electronic energy + Delta-G solvation = -23682.520463 eV Core-core repulsion = 20304.429554 eV Total energy + Delta-G solvation = -3378.090909 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 291.134 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.29495 -36.73932 -35.80833 -35.63082 -33.23695 -32.37473 -32.10008 -29.67415 -28.40110 -27.21754 -25.22463 -23.10577 -21.61374 -20.13574 -19.71180 -18.47818 -17.30581 -16.50169 -16.08094 -15.84700 -15.11187 -14.90546 -14.66306 -14.45381 -14.22074 -13.82718 -13.45181 -13.31638 -13.16097 -13.14508 -12.79948 -12.57807 -12.28766 -11.96705 -11.92024 -11.61672 -11.38306 -11.32662 -11.05174 -10.85141 -10.80392 -10.57546 -10.36819 -10.36121 -10.09915 -9.99560 -9.69450 -8.85688 -8.52635 -8.02207 -7.74794 -6.06520 -4.16733 0.16557 2.95452 3.46090 3.56149 3.82443 3.87699 4.01767 4.26064 4.56472 4.63043 4.64577 4.79296 4.96756 5.04055 5.18087 5.25159 5.28939 5.33330 5.46549 5.59640 5.62083 5.75427 5.81484 5.87100 5.96802 6.03174 6.09730 6.15349 6.27070 6.35908 6.42586 6.56775 6.67777 7.36168 7.43939 7.59691 7.76957 8.37779 8.89902 9.40921 9.61405 11.04112 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.017979 B = 0.006667 C = 0.005561 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1557.030919 B = 4198.688334 C = 5033.687304 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.673 4.673 2 S 2.427 3.573 3 O -0.949 6.949 4 O -0.883 6.883 5 C -0.615 4.615 6 C 0.099 3.901 7 H 0.055 0.945 8 C -0.139 4.139 9 C -0.115 4.115 10 C -0.120 4.120 11 C 0.057 3.943 12 N -0.521 5.521 13 C 0.040 3.960 14 C 0.201 3.799 15 H 0.051 0.949 16 O -0.560 6.560 17 C -0.564 4.564 18 H 0.068 0.932 19 C 0.083 3.917 20 N -0.898 5.898 21 Si 0.868 3.132 22 H -0.290 1.290 23 H -0.297 1.297 24 H -0.210 1.210 25 H 0.119 0.881 26 H 0.125 0.875 27 H 0.128 0.872 28 H 0.136 0.864 29 H 0.127 0.873 30 H 0.086 0.914 31 H 0.071 0.929 32 H 0.064 0.936 33 H 0.057 0.943 34 H 0.075 0.925 35 H 0.063 0.937 36 H 0.027 0.973 37 H 0.089 0.911 38 H 0.067 0.933 39 H 0.029 0.971 40 H 0.361 0.639 41 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.314 16.761 6.848 18.109 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.821 4.821 2 S 2.605 3.395 3 O -0.946 6.946 4 O -0.880 6.880 5 C -0.743 4.743 6 C -0.011 4.011 7 H 0.072 0.928 8 C -0.176 4.176 9 C -0.153 4.153 10 C -0.158 4.158 11 C -0.071 4.071 12 N -0.247 5.247 13 C -0.087 4.087 14 C 0.142 3.858 15 H 0.068 0.932 16 O -0.365 6.365 17 C -0.602 4.602 18 H 0.086 0.914 19 C -0.120 4.120 20 N -0.535 5.535 21 Si 0.694 3.306 22 H -0.217 1.217 23 H -0.224 1.224 24 H -0.132 1.132 25 H 0.138 0.862 26 H 0.144 0.856 27 H 0.147 0.853 28 H 0.154 0.846 29 H 0.146 0.854 30 H 0.104 0.896 31 H 0.089 0.911 32 H 0.082 0.918 33 H 0.076 0.924 34 H 0.093 0.907 35 H 0.082 0.918 36 H 0.045 0.955 37 H 0.107 0.893 38 H 0.085 0.915 39 H 0.047 0.953 40 H 0.208 0.792 41 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 0.759 17.031 5.607 17.946 hybrid contribution -0.737 -0.872 1.167 1.633 sum 0.021 16.159 6.774 17.521 Atomic orbital electron populations 1.30482 1.29212 1.11376 1.11006 1.07999 0.77190 0.76086 0.78234 1.93554 1.78679 1.35611 1.86804 1.93708 1.76834 1.65429 1.51993 1.30500 1.05625 1.14042 1.24162 1.21226 0.89147 0.94893 0.95826 0.92760 1.22060 0.96105 0.95461 1.04019 1.21516 0.95246 0.99325 0.99213 1.21641 0.98755 0.95309 1.00123 1.22100 0.87262 0.97606 1.00131 1.62066 1.04130 1.12842 1.45637 1.22890 0.97144 0.88822 0.99827 1.19662 0.96271 0.88903 0.80915 0.93177 1.86610 1.31436 1.80880 1.37608 1.21548 1.23745 0.99867 1.15073 0.91354 1.24955 0.95418 0.94191 0.97471 1.69961 1.40670 1.06503 1.36366 0.87078 0.80490 0.81887 0.81145 1.21711 1.22433 1.13174 0.86215 0.85600 0.85336 0.84584 0.85428 0.89567 0.91064 0.91759 0.92440 0.90656 0.91786 0.95467 0.89260 0.91477 0.95279 0.79243 0.92728 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.67 -5.76 10.62 101.05 1.07 -4.69 16 2 S 2.43 29.72 4.72 -107.50 -0.51 29.22 16 3 O -0.95 -13.72 15.76 -57.83 -0.91 -14.63 16 4 O -0.88 -14.64 15.07 -59.91 -0.90 -15.55 16 5 C -0.62 -6.70 5.12 37.16 0.19 -6.51 16 6 C 0.10 1.34 2.13 -67.72 -0.14 1.20 16 7 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 8 C -0.14 -1.78 4.76 -26.66 -0.13 -1.90 16 9 C -0.12 -1.38 6.00 -26.61 -0.16 -1.54 16 10 C -0.12 -1.65 6.09 -26.65 -0.16 -1.81 16 11 C 0.06 0.92 5.21 -3.84 -0.02 0.90 16 12 N -0.52 -8.77 3.08 -226.70 -0.70 -9.47 16 13 C 0.04 0.77 3.81 -3.82 -0.01 0.76 16 14 C 0.20 4.71 2.03 -27.88 -0.06 4.66 16 15 H 0.05 1.21 5.70 -51.93 -0.30 0.92 16 16 O -0.56 -13.43 9.69 -35.83 -0.35 -13.78 16 17 C -0.56 -15.61 9.34 -34.44 -0.32 -15.94 16 18 H 0.07 2.01 7.99 -52.48 -0.42 1.59 16 19 C 0.08 2.42 5.47 -17.82 -0.10 2.33 16 20 N -0.90 -27.51 13.96 55.43 0.77 -26.74 16 21 Si 0.87 22.25 26.99 -169.99 -4.59 17.66 16 22 H -0.29 -7.41 7.11 56.52 0.40 -7.01 16 23 H -0.30 -7.69 7.11 56.52 0.40 -7.29 16 24 H -0.21 -5.32 5.31 56.52 0.30 -5.02 16 25 H 0.12 0.73 8.14 -51.93 -0.42 0.31 16 26 H 0.13 1.00 8.14 -51.92 -0.42 0.58 16 27 H 0.13 0.99 8.14 -51.92 -0.42 0.57 16 28 H 0.14 1.41 6.06 -51.93 -0.31 1.09 16 29 H 0.13 0.94 8.14 -51.92 -0.42 0.52 16 30 H 0.09 1.25 5.48 -51.93 -0.28 0.97 16 31 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 35 H 0.06 0.76 8.14 -51.92 -0.42 0.33 16 36 H 0.03 0.41 8.14 -51.93 -0.42 -0.01 16 37 H 0.09 1.62 6.00 -51.93 -0.31 1.31 16 38 H 0.07 1.20 5.76 -51.93 -0.30 0.90 16 39 H 0.03 0.56 8.14 -51.93 -0.42 0.13 16 40 H 0.36 8.23 8.09 45.56 0.37 8.59 16 41 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 LS Contribution 320.46 15.07 4.83 4.83 Total: -1.00 -35.37 320.46 -8.06 -43.43 By element: Atomic # 1 Polarization: 13.45 SS G_CDS: -5.87 Total: 7.58 kcal Atomic # 6 Polarization: -22.71 SS G_CDS: 0.16 Total: -22.55 kcal Atomic # 7 Polarization: -36.29 SS G_CDS: 0.07 Total: -36.21 kcal Atomic # 8 Polarization: -41.79 SS G_CDS: -2.16 Total: -43.96 kcal Atomic # 14 Polarization: 22.25 SS G_CDS: -4.59 Total: 17.66 kcal Atomic # 16 Polarization: 29.72 SS G_CDS: -0.51 Total: 29.22 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -35.37 -8.06 -43.43 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930643721.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.401 kcal (2) G-P(sol) polarization free energy of solvation -35.372 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.772 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.059 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.430 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.831 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds