Wall clock time and date at job start Tue Mar 31 2020 06:20:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.21291 * 119.99761 * 2 1 4 4 N 1.34774 * 120.00185 * 180.02562 * 2 1 3 5 5 C 1.39921 * 120.00232 * 184.61555 * 4 2 1 6 6 C 1.38946 * 120.03735 * 144.89940 * 5 4 2 7 7 C 1.38136 * 120.07947 * 180.25506 * 6 5 4 8 8 C 1.38171 * 120.14597 * 359.45249 * 7 6 5 9 9 C 1.38942 * 120.06087 * 0.54800 * 8 7 6 10 10 N 1.39674 * 120.03495 * 179.74629 * 9 8 7 11 11 C 1.46497 * 120.00608 * 359.97438 * 10 9 8 12 12 C 1.50698 * 109.47528 * 179.97438 * 11 10 9 13 13 O 1.21284 * 119.99963 * 0.02562 * 12 11 10 14 14 N 1.34776 * 119.99837 * 180.02562 * 12 11 10 15 15 C 1.46509 * 119.99504 * 180.02562 * 14 12 11 16 16 C 1.50705 * 109.46631 * 179.97438 * 15 14 12 17 17 H 1.08002 * 120.00169 * 359.97438 * 16 15 14 18 18 C 1.37874 * 119.99838 * 179.97438 * 16 15 14 19 19 N 1.31518 * 119.99944 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 120.00279 * 179.97438 * 18 16 15 21 21 H 1.48507 * 109.46677 * 359.97438 * 20 18 16 22 22 H 1.48493 * 109.46813 * 120.00007 * 20 18 16 23 23 H 1.48495 * 109.47103 * 240.00084 * 20 18 16 24 24 C 1.38718 * 120.03148 * 324.88726 * 5 4 2 25 25 H 1.09009 * 109.46637 * 239.99351 * 1 2 3 26 26 H 1.08999 * 109.47432 * 359.97438 * 1 2 3 27 27 H 1.09005 * 109.47585 * 119.99617 * 1 2 3 28 28 H 0.97000 * 120.00173 * 4.61261 * 4 2 1 29 29 H 1.08003 * 119.95891 * 359.97438 * 6 5 4 30 30 H 1.08006 * 119.92548 * 179.73211 * 7 6 5 31 31 H 1.07999 * 119.96842 * 180.27621 * 8 7 6 32 32 H 0.97002 * 119.99940 * 179.97438 * 10 9 8 33 33 H 1.08999 * 109.47242 * 300.00236 * 11 10 9 34 34 H 1.09002 * 109.46591 * 59.99647 * 11 10 9 35 35 H 0.96997 * 120.00553 * 359.97438 * 14 12 11 36 36 H 1.08994 * 109.47101 * 299.99341 * 15 14 12 37 37 H 1.09000 * 109.47259 * 59.99766 * 15 14 12 38 38 H 0.96997 * 120.00164 * 179.97438 * 19 18 16 39 39 H 1.08005 * 120.07075 * 359.97438 * 24 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 3.5767 -1.1692 0.0970 6 6 4.2237 -2.1816 0.7948 7 6 5.6013 -2.1816 0.8961 8 6 6.3413 -1.1816 0.2947 9 6 5.7005 -0.1663 -0.4046 10 7 6.4488 0.8471 -1.0079 11 6 7.9100 0.8404 -0.9031 12 6 8.4717 2.0319 -1.6350 13 8 7.7249 2.8105 -2.1892 14 7 9.8039 2.2323 -1.6737 15 6 10.3499 3.3911 -2.3848 16 6 11.8531 3.3839 -2.2770 17 1 12.3518 2.5954 -1.7330 18 6 12.5917 4.3840 -2.8730 19 7 11.9844 5.3445 -3.5352 20 14 14.4549 4.3756 -2.7390 21 1 14.8887 3.1973 -1.9460 22 1 15.0485 4.3041 -4.0982 23 1 14.9083 5.6190 -2.0656 24 6 4.3160 -0.1605 -0.5032 25 1 -0.3633 -0.5140 0.8900 26 1 -0.3634 1.0276 0.0005 27 1 -0.3634 -0.5138 -0.8900 28 1 1.6983 -2.0058 -0.0685 29 1 3.6485 -2.9671 1.2625 30 1 6.1014 -2.9674 1.4428 31 1 7.4185 -1.1869 0.3719 32 1 6.0009 1.5555 -1.4962 33 1 8.1992 0.8888 0.1467 34 1 8.3016 -0.0754 -1.3459 35 1 10.4012 1.6099 -1.2302 36 1 10.0603 3.3427 -3.4344 37 1 9.9585 4.3068 -1.9417 38 1 12.5040 6.0483 -3.9542 39 1 3.8155 0.6273 -1.0467 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000020049850.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:20:49 Heat of formation + Delta-G solvation = -47.984665 kcal Electronic energy + Delta-G solvation = -21647.694065 eV Core-core repulsion = 18168.916990 eV Total energy + Delta-G solvation = -3478.777075 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.137 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.64416 -39.30983 -38.48484 -35.81995 -34.40513 -34.03249 -32.41525 -31.11997 -30.25718 -28.51843 -27.76441 -25.89665 -23.25494 -22.60256 -21.59071 -20.65915 -19.78556 -18.29487 -17.31982 -17.12489 -16.20062 -16.11673 -15.76943 -15.48941 -15.29327 -14.92846 -14.76154 -14.20734 -13.96881 -13.58434 -13.49195 -13.42520 -13.02914 -12.77205 -12.67121 -12.43067 -12.01548 -11.76236 -11.67016 -11.52216 -10.99633 -10.94528 -10.71795 -10.36373 -9.99380 -9.86773 -9.43514 -9.25426 -8.79744 -8.32676 -8.00076 -7.35840 -6.20407 -4.27841 1.30548 1.59382 2.37197 2.80915 3.18514 3.21700 3.28180 3.31218 3.39061 3.88538 4.08917 4.33710 4.42514 4.83723 4.90899 4.94900 5.15473 5.15896 5.22327 5.26300 5.39885 5.42701 5.47584 5.48521 5.59472 5.78163 6.17921 6.25866 6.41037 6.51183 6.85114 7.15703 7.20860 7.29640 7.40399 7.45059 7.60809 7.84468 7.88074 7.92199 8.50311 8.69716 8.95556 9.38702 10.89805 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.032938 B = 0.002443 C = 0.002288 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 849.884774 B =11459.770983 C =12232.899800 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.505 3.495 3 O -0.519 6.519 4 N -0.675 5.675 5 C 0.184 3.816 6 C -0.211 4.211 7 C -0.053 4.053 8 C -0.216 4.216 9 C 0.241 3.759 10 N -0.728 5.728 11 C 0.103 3.897 12 C 0.493 3.507 13 O -0.552 6.552 14 N -0.706 5.706 15 C 0.249 3.751 16 C -0.544 4.544 17 H 0.065 0.935 18 C 0.063 3.937 19 N -0.885 5.885 20 Si 0.905 3.095 21 H -0.271 1.271 22 H -0.282 1.282 23 H -0.282 1.282 24 C -0.197 4.197 25 H 0.090 0.910 26 H 0.095 0.905 27 H 0.090 0.910 28 H 0.410 0.590 29 H 0.118 0.882 30 H 0.123 0.877 31 H 0.122 0.878 32 H 0.413 0.587 33 H 0.086 0.914 34 H 0.087 0.913 35 H 0.393 0.607 36 H 0.028 0.972 37 H 0.028 0.972 38 H 0.266 0.734 39 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.121 -18.506 9.127 28.132 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.293 3.707 3 O -0.393 6.393 4 N -0.321 5.321 5 C 0.089 3.911 6 C -0.233 4.233 7 C -0.073 4.073 8 C -0.240 4.240 9 C 0.135 3.865 10 N -0.359 5.359 11 C -0.025 4.025 12 C 0.276 3.724 13 O -0.431 6.431 14 N -0.354 5.354 15 C 0.128 3.872 16 C -0.583 4.583 17 H 0.083 0.917 18 C -0.141 4.141 19 N -0.522 5.522 20 Si 0.732 3.268 21 H -0.196 1.196 22 H -0.208 1.208 23 H -0.208 1.208 24 C -0.222 4.222 25 H 0.108 0.892 26 H 0.114 0.886 27 H 0.109 0.891 28 H 0.246 0.754 29 H 0.136 0.864 30 H 0.141 0.859 31 H 0.140 0.860 32 H 0.251 0.749 33 H 0.104 0.896 34 H 0.104 0.896 35 H 0.226 0.774 36 H 0.046 0.954 37 H 0.046 0.954 38 H 0.076 0.924 39 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -19.010 -16.936 8.620 26.879 hybrid contribution 0.942 -0.389 0.039 1.020 sum -18.068 -17.324 8.659 26.487 Atomic orbital electron populations 1.21927 0.90853 1.06005 1.04407 1.21025 0.90857 0.83304 0.75476 1.90787 1.70383 1.31230 1.46932 1.43566 1.05431 1.09772 1.73305 1.17371 0.81839 0.95974 0.95884 1.20534 0.94945 1.01696 1.06150 1.20609 0.92946 0.97011 0.96713 1.20668 0.99942 0.97326 1.06054 1.17639 0.90184 0.87881 0.90778 1.44478 1.04298 1.28105 1.59001 1.21119 0.82085 0.98174 1.01124 1.20350 0.83762 0.86631 0.81620 1.90666 1.58449 1.47127 1.46863 1.46408 1.05285 1.29640 1.54109 1.19166 0.93253 0.82551 0.92201 1.21247 0.90648 1.10855 1.35506 0.91727 1.24968 0.99383 0.95024 0.94710 1.69984 1.35967 1.12558 1.33697 0.86336 0.84370 0.78114 0.77945 1.19593 1.20770 1.20768 1.20593 0.91598 1.02810 1.07196 0.89158 0.88582 0.89141 0.75444 0.86436 0.85909 0.85967 0.74869 0.89574 0.89562 0.77397 0.95361 0.95360 0.92432 0.84567 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.83 10.32 36.00 0.37 -0.46 16 2 C 0.51 4.96 7.78 -10.99 -0.09 4.87 16 3 O -0.52 -7.80 14.52 5.55 0.08 -7.72 16 4 N -0.68 -5.66 5.34 -9.88 -0.05 -5.71 16 5 C 0.18 2.11 6.30 -83.73 -0.53 1.59 16 6 C -0.21 -2.08 9.96 -39.36 -0.39 -2.47 16 7 C -0.05 -0.54 10.03 -39.64 -0.40 -0.94 16 8 C -0.22 -2.57 9.31 -39.35 -0.37 -2.94 16 9 C 0.24 3.39 6.65 -83.82 -0.56 2.84 16 10 N -0.73 -11.12 5.70 -59.83 -0.34 -11.46 16 11 C 0.10 1.48 5.39 -5.20 -0.03 1.45 16 12 C 0.49 9.61 7.90 -10.99 -0.09 9.53 16 13 O -0.55 -13.08 15.67 5.55 0.09 -13.00 16 14 N -0.71 -14.44 5.55 -61.47 -0.34 -14.79 16 15 C 0.25 6.53 5.43 -5.19 -0.03 6.50 16 16 C -0.54 -14.61 9.28 -34.44 -0.32 -14.93 16 17 H 0.06 1.61 7.60 -52.49 -0.40 1.22 16 18 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 19 N -0.88 -26.02 13.29 55.43 0.74 -25.28 16 20 Si 0.91 20.73 29.54 -169.99 -5.02 15.71 16 21 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 22 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 23 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 24 C -0.20 -2.79 8.54 -39.20 -0.33 -3.13 16 25 H 0.09 0.25 8.14 -51.92 -0.42 -0.18 16 26 H 0.10 0.53 8.12 -51.93 -0.42 0.10 16 27 H 0.09 0.25 8.14 -51.93 -0.42 -0.17 16 28 H 0.41 1.79 8.82 -40.82 -0.36 1.43 16 29 H 0.12 0.84 8.06 -52.48 -0.42 0.42 16 30 H 0.12 0.91 8.06 -52.48 -0.42 0.49 16 31 H 0.12 1.27 6.72 -52.49 -0.35 0.92 16 32 H 0.41 7.01 7.45 -40.82 -0.30 6.71 16 33 H 0.09 1.07 7.95 -51.93 -0.41 0.66 16 34 H 0.09 1.05 7.95 -51.93 -0.41 0.63 16 35 H 0.39 6.72 8.32 -40.82 -0.34 6.38 16 36 H 0.03 0.82 8.14 -51.93 -0.42 0.40 16 37 H 0.03 0.82 8.14 -51.93 -0.42 0.40 16 38 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 39 H 0.14 2.16 6.22 -52.48 -0.33 1.83 16 LS Contribution 339.41 15.07 5.11 5.11 Total: -1.00 -35.42 339.41 -7.59 -43.01 By element: Atomic # 1 Polarization: 15.57 SS G_CDS: -5.00 Total: 10.57 kcal Atomic # 6 Polarization: 6.40 SS G_CDS: -2.85 Total: 3.55 kcal Atomic # 7 Polarization: -57.24 SS G_CDS: 0.00 Total: -57.24 kcal Atomic # 8 Polarization: -20.88 SS G_CDS: 0.17 Total: -20.72 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -5.02 Total: 15.71 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -35.42 -7.59 -43.01 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000020049850.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.979 kcal (2) G-P(sol) polarization free energy of solvation -35.419 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.398 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.587 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.006 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.985 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds