Wall clock time and date at job start Tue Mar 31 2020 06:20:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.21291 * 119.99761 * 2 1 4 4 N 1.34774 * 120.00185 * 180.02562 * 2 1 3 5 5 C 1.39921 * 120.00232 * 184.61555 * 4 2 1 6 6 C 1.38946 * 120.03735 * 144.89940 * 5 4 2 7 7 C 1.38136 * 120.07947 * 180.25506 * 6 5 4 8 8 C 1.38171 * 120.14597 * 359.45249 * 7 6 5 9 9 C 1.38942 * 120.06087 * 0.54800 * 8 7 6 10 10 N 1.39674 * 120.03495 * 179.74629 * 9 8 7 11 11 C 1.46497 * 120.00608 * 359.97438 * 10 9 8 12 12 C 1.50698 * 109.47528 * 179.97438 * 11 10 9 13 13 O 1.21284 * 119.99963 * 0.02562 * 12 11 10 14 14 N 1.34776 * 119.99837 * 180.02562 * 12 11 10 15 15 C 1.46509 * 119.99504 * 180.02562 * 14 12 11 16 16 C 1.50705 * 109.46631 * 179.97438 * 15 14 12 17 17 H 1.08002 * 120.00169 * 359.97438 * 16 15 14 18 18 C 1.37874 * 119.99838 * 179.97438 * 16 15 14 19 19 N 1.31518 * 119.99944 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 120.00279 * 179.97438 * 18 16 15 21 21 H 1.48507 * 109.46677 * 359.97438 * 20 18 16 22 22 H 1.48493 * 109.46813 * 120.00007 * 20 18 16 23 23 H 1.48495 * 109.47103 * 240.00084 * 20 18 16 24 24 C 1.38718 * 120.03148 * 324.88726 * 5 4 2 25 25 H 1.09009 * 109.46637 * 239.99351 * 1 2 3 26 26 H 1.08999 * 109.47432 * 359.97438 * 1 2 3 27 27 H 1.09005 * 109.47585 * 119.99617 * 1 2 3 28 28 H 0.97000 * 120.00173 * 4.61261 * 4 2 1 29 29 H 1.08003 * 119.95891 * 359.97438 * 6 5 4 30 30 H 1.08006 * 119.92548 * 179.73211 * 7 6 5 31 31 H 1.07999 * 119.96842 * 180.27621 * 8 7 6 32 32 H 0.97002 * 119.99940 * 179.97438 * 10 9 8 33 33 H 1.08999 * 109.47242 * 300.00236 * 11 10 9 34 34 H 1.09002 * 109.46591 * 59.99647 * 11 10 9 35 35 H 0.96997 * 120.00553 * 359.97438 * 14 12 11 36 36 H 1.08994 * 109.47101 * 299.99341 * 15 14 12 37 37 H 1.09000 * 109.47259 * 59.99766 * 15 14 12 38 38 H 0.96997 * 120.00164 * 179.97438 * 19 18 16 39 39 H 1.08005 * 120.07075 * 359.97438 * 24 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 3.5767 -1.1692 0.0970 6 6 4.2237 -2.1816 0.7948 7 6 5.6013 -2.1816 0.8961 8 6 6.3413 -1.1816 0.2947 9 6 5.7005 -0.1663 -0.4046 10 7 6.4488 0.8471 -1.0079 11 6 7.9100 0.8404 -0.9031 12 6 8.4717 2.0319 -1.6350 13 8 7.7249 2.8105 -2.1892 14 7 9.8039 2.2323 -1.6737 15 6 10.3499 3.3911 -2.3848 16 6 11.8531 3.3839 -2.2770 17 1 12.3518 2.5954 -1.7330 18 6 12.5917 4.3840 -2.8730 19 7 11.9844 5.3445 -3.5352 20 14 14.4549 4.3756 -2.7390 21 1 14.8887 3.1973 -1.9460 22 1 15.0485 4.3041 -4.0982 23 1 14.9083 5.6190 -2.0656 24 6 4.3160 -0.1605 -0.5032 25 1 -0.3633 -0.5140 0.8900 26 1 -0.3634 1.0276 0.0005 27 1 -0.3634 -0.5138 -0.8900 28 1 1.6983 -2.0058 -0.0685 29 1 3.6485 -2.9671 1.2625 30 1 6.1014 -2.9674 1.4428 31 1 7.4185 -1.1869 0.3719 32 1 6.0009 1.5555 -1.4962 33 1 8.1992 0.8888 0.1467 34 1 8.3016 -0.0754 -1.3459 35 1 10.4012 1.6099 -1.2302 36 1 10.0603 3.3427 -3.4344 37 1 9.9585 4.3068 -1.9417 38 1 12.5040 6.0483 -3.9542 39 1 3.8155 0.6273 -1.0467 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000020049850.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:20:48 Heat of formation + Delta-G solvation = -76.332273 kcal Electronic energy + Delta-G solvation = -21648.923309 eV Core-core repulsion = 18168.916990 eV Total energy + Delta-G solvation = -3480.006320 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.137 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.48669 -40.78347 -39.55688 -36.87666 -36.19042 -35.05986 -34.42159 -31.86628 -31.29574 -29.63778 -29.10499 -27.32567 -24.62126 -24.01535 -22.54317 -21.73688 -21.21344 -19.45602 -18.74589 -17.94762 -17.70387 -17.21861 -17.02695 -16.76910 -16.70370 -16.31101 -15.94166 -15.50186 -14.98273 -14.93453 -14.58846 -14.33859 -14.27651 -14.00317 -13.97439 -13.49367 -13.34379 -13.02098 -12.93426 -12.76888 -12.48722 -12.41915 -12.23567 -11.64852 -11.48614 -10.97476 -10.85596 -10.84795 -10.74916 -9.93617 -9.20387 -8.35573 -8.31446 -6.48323 0.42774 0.71041 1.42842 1.44025 1.57605 1.58807 1.62630 2.00162 2.22237 2.38612 2.72301 3.00836 3.03886 3.78627 3.84789 4.10151 4.24221 4.37672 4.37921 4.41936 4.50965 4.61211 4.65384 4.74135 4.83507 5.06077 5.11017 5.19058 5.33845 5.42182 5.46666 5.50730 5.61435 5.67080 5.80613 6.00085 6.37996 6.49105 6.61418 6.64958 6.80573 7.19659 7.19704 7.36857 8.81055 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.032938 B = 0.002443 C = 0.002288 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 849.884774 B =11459.770983 C =12232.899800 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.496 3.504 3 O -0.582 6.582 4 N -0.661 5.661 5 C 0.174 3.826 6 C -0.200 4.200 7 C -0.050 4.050 8 C -0.221 4.221 9 C 0.218 3.782 10 N -0.745 5.745 11 C 0.121 3.879 12 C 0.490 3.510 13 O -0.600 6.600 14 N -0.699 5.699 15 C 0.265 3.735 16 C -0.554 4.554 17 H 0.088 0.912 18 C 0.001 3.999 19 N -0.932 5.932 20 Si 0.987 3.013 21 H -0.250 1.250 22 H -0.279 1.279 23 H -0.280 1.280 24 C -0.226 4.226 25 H 0.120 0.880 26 H 0.086 0.914 27 H 0.117 0.883 28 H 0.431 0.569 29 H 0.153 0.847 30 H 0.159 0.841 31 H 0.140 0.860 32 H 0.398 0.602 33 H 0.115 0.885 34 H 0.119 0.881 35 H 0.413 0.587 36 H -0.011 1.011 37 H -0.013 1.013 38 H 0.269 0.731 39 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.626 -22.387 11.265 31.225 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.287 3.713 3 O -0.461 6.461 4 N -0.308 5.308 5 C 0.078 3.922 6 C -0.222 4.222 7 C -0.069 4.069 8 C -0.244 4.244 9 C 0.114 3.886 10 N -0.376 5.376 11 C -0.006 4.006 12 C 0.277 3.723 13 O -0.482 6.482 14 N -0.349 5.349 15 C 0.142 3.858 16 C -0.592 4.592 17 H 0.106 0.894 18 C -0.199 4.199 19 N -0.571 5.571 20 Si 0.810 3.190 21 H -0.174 1.174 22 H -0.205 1.205 23 H -0.206 1.206 24 C -0.251 4.251 25 H 0.138 0.862 26 H 0.105 0.895 27 H 0.136 0.864 28 H 0.271 0.729 29 H 0.171 0.829 30 H 0.176 0.824 31 H 0.158 0.842 32 H 0.234 0.766 33 H 0.132 0.868 34 H 0.136 0.864 35 H 0.250 0.750 36 H 0.007 0.993 37 H 0.005 0.995 38 H 0.077 0.923 39 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -18.546 -20.941 10.805 29.988 hybrid contribution 0.643 0.753 -0.606 1.161 sum -17.904 -20.189 10.199 28.847 Atomic orbital electron populations 1.21947 0.86666 1.06329 1.07066 1.22019 0.92839 0.82596 0.73840 1.90774 1.71954 1.33485 1.49878 1.43526 1.04450 1.10596 1.72209 1.17608 0.83201 0.95694 0.95656 1.20959 0.95363 1.01345 1.04531 1.21082 0.93119 0.96957 0.95747 1.20961 1.01048 0.96897 1.05520 1.17858 0.90157 0.88513 0.92047 1.44538 1.04532 1.28540 1.59962 1.21110 0.81617 0.96064 1.01822 1.21307 0.82869 0.87449 0.80691 1.90647 1.59507 1.49259 1.48801 1.46080 1.06245 1.28565 1.53971 1.18593 0.93792 0.83207 0.90214 1.21654 0.90661 1.11459 1.35443 0.89397 1.26112 1.05320 0.94403 0.94020 1.70150 1.38403 1.13607 1.34939 0.85074 0.77040 0.78748 0.78128 1.17350 1.20514 1.20592 1.20571 0.92255 1.03469 1.08807 0.86168 0.89516 0.86435 0.72904 0.82903 0.82356 0.84220 0.76634 0.86767 0.86391 0.74998 0.99333 0.99463 0.92256 0.87722 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.27 10.32 71.24 0.74 -0.54 16 2 C 0.50 9.70 7.78 87.66 0.68 10.39 16 3 O -0.58 -18.77 14.52 -3.06 -0.04 -18.81 16 4 N -0.66 -10.19 5.34 -303.57 -1.62 -11.81 16 5 C 0.17 3.82 6.30 38.13 0.24 4.06 16 6 C -0.20 -3.26 9.96 22.42 0.22 -3.04 16 7 C -0.05 -0.82 10.03 22.23 0.22 -0.60 16 8 C -0.22 -4.72 9.31 22.42 0.21 -4.51 16 9 C 0.22 6.16 6.65 38.19 0.25 6.42 16 10 N -0.74 -23.48 5.70 -343.21 -1.96 -25.44 16 11 C 0.12 3.35 5.39 85.63 0.46 3.82 16 12 C 0.49 19.62 7.90 87.66 0.69 20.32 16 13 O -0.60 -30.30 15.67 -3.04 -0.05 -30.35 16 14 N -0.70 -28.95 5.55 -466.77 -2.59 -31.54 16 15 C 0.26 14.55 5.43 85.63 0.46 15.01 16 16 C -0.55 -29.94 9.28 25.60 0.24 -29.70 16 17 H 0.09 4.23 7.60 -2.91 -0.02 4.21 16 18 C 0.00 0.05 5.46 84.65 0.46 0.51 16 19 N -0.93 -56.61 13.29 21.45 0.28 -56.33 16 20 Si 0.99 42.22 29.54 68.60 2.03 44.24 16 21 H -0.25 -9.77 7.11 99.48 0.71 -9.07 16 22 H -0.28 -11.77 7.11 99.48 0.71 -11.07 16 23 H -0.28 -11.84 7.11 99.48 0.71 -11.13 16 24 C -0.23 -6.69 8.54 22.52 0.19 -6.50 16 25 H 0.12 0.26 8.14 -2.38 -0.02 0.24 16 26 H 0.09 0.90 8.12 -2.39 -0.02 0.88 16 27 H 0.12 0.32 8.14 -2.38 -0.02 0.30 16 28 H 0.43 2.56 8.82 -92.71 -0.82 1.75 16 29 H 0.15 1.40 8.06 -2.91 -0.02 1.38 16 30 H 0.16 1.48 8.06 -2.91 -0.02 1.46 16 31 H 0.14 2.40 6.72 -2.91 -0.02 2.38 16 32 H 0.40 14.73 7.45 -92.71 -0.69 14.04 16 33 H 0.11 2.56 7.95 -2.39 -0.02 2.54 16 34 H 0.12 2.55 7.95 -2.39 -0.02 2.53 16 35 H 0.41 13.58 8.32 -92.71 -0.77 12.81 16 36 H -0.01 -0.70 8.14 -2.39 -0.02 -0.72 16 37 H -0.01 -0.78 8.14 -2.39 -0.02 -0.80 16 38 H 0.27 15.19 8.31 -92.71 -0.77 14.42 16 39 H 0.10 3.72 6.22 -2.91 -0.02 3.70 16 Total: -1.00 -84.50 339.41 -0.04 -84.55 By element: Atomic # 1 Polarization: 31.01 SS G_CDS: -1.17 Total: 29.84 kcal Atomic # 6 Polarization: 10.56 SS G_CDS: 5.08 Total: 15.64 kcal Atomic # 7 Polarization: -119.23 SS G_CDS: -5.88 Total: -125.11 kcal Atomic # 8 Polarization: -49.06 SS G_CDS: -0.09 Total: -49.16 kcal Atomic # 14 Polarization: 42.22 SS G_CDS: 2.03 Total: 44.24 kcal Total: -84.50 -0.04 -84.55 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000020049850.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.214 kcal (2) G-P(sol) polarization free energy of solvation -84.504 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.290 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.042 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.546 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.332 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds