Wall clock time and date at job start Tue Mar 31 2020 06:07:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46500 * 109.47321 * 2 1 4 4 C 1.46496 * 120.00202 * 270.00297 * 3 2 1 5 5 C 1.50703 * 109.47104 * 270.00190 * 4 3 2 6 6 H 1.08000 * 119.99911 * 359.97438 * 5 4 3 7 7 C 1.37873 * 119.99853 * 180.02562 * 5 4 3 8 8 N 1.31519 * 120.00419 * 359.97438 * 7 5 4 9 9 Si 1.86805 * 119.99831 * 179.97438 * 7 5 4 10 10 H 1.48500 * 109.46976 * 60.00389 * 9 7 5 11 11 H 1.48503 * 109.46817 * 179.97438 * 9 7 5 12 12 H 1.48496 * 109.47314 * 299.99971 * 9 7 5 13 13 C 1.34770 * 119.99672 * 90.00217 * 3 2 1 14 14 O 1.21588 * 119.99915 * 179.97438 * 13 3 2 15 15 N 1.34776 * 120.00191 * 0.02562 * 13 3 2 16 16 C 1.39435 * 119.99943 * 184.55513 * 15 13 3 17 17 C 1.39135 * 119.92714 * 324.84446 * 16 15 13 18 18 C 1.37661 * 120.07669 * 180.02562 * 17 16 15 19 19 C 1.39761 * 119.92299 * 359.97438 * 18 17 16 20 20 C 1.47584 * 120.07237 * 180.02562 * 19 18 17 21 21 N 1.34767 * 120.00174 * 179.97438 * 20 19 18 22 22 O 1.21592 * 119.99688 * 359.97438 * 20 19 18 23 23 C 1.39754 * 119.85389 * 0.27401 * 19 18 17 24 24 C 1.37667 * 119.92070 * 359.46796 * 23 19 18 25 25 H 1.09005 * 109.47057 * 299.99724 * 1 2 3 26 26 H 1.09000 * 109.47032 * 59.99617 * 1 2 3 27 27 H 1.08997 * 109.47430 * 179.97438 * 1 2 3 28 28 H 1.09005 * 109.47057 * 240.00276 * 2 1 3 29 29 H 1.09000 * 109.47032 * 120.00383 * 2 1 3 30 30 H 1.09006 * 109.47119 * 29.99964 * 4 3 2 31 31 H 1.08998 * 109.47588 * 149.99562 * 4 3 2 32 32 H 0.96996 * 119.99927 * 179.97438 * 8 7 5 33 33 H 0.96994 * 119.99932 * 4.55079 * 15 13 3 34 34 H 1.08007 * 119.96086 * 0.02562 * 17 16 15 35 35 H 1.08002 * 120.03818 * 179.97438 * 18 17 16 36 36 H 0.97008 * 119.99803 * 0.02562 * 21 20 19 37 37 H 0.96996 * 120.00263 * 179.72011 * 21 20 19 38 38 H 1.08001 * 120.03802 * 179.70520 * 23 19 18 39 39 H 1.08000 * 119.95947 * 180.25305 * 24 23 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0718 -1.2687 5 6 3.6857 1.8350 -1.7038 6 1 4.3428 1.2308 -1.0958 7 6 4.1493 2.3905 -2.8774 8 7 3.3493 3.1267 -3.6175 9 14 5.9137 2.0974 -3.4164 10 1 6.1414 0.6408 -3.5945 11 1 6.1611 2.7975 -4.7025 12 1 6.8409 2.6206 -2.3812 13 6 2.2430 2.0164 1.1672 14 8 2.6488 3.1626 1.1672 15 7 2.0189 1.3809 2.3344 16 6 2.1598 2.0670 3.5400 17 6 3.1453 3.0399 3.6739 18 6 3.2875 3.7188 4.8630 19 6 2.4402 3.4301 5.9363 20 6 2.5893 4.1562 7.2125 21 7 1.7711 3.8770 8.2463 22 8 3.4504 5.0065 7.3310 23 6 1.4547 2.4485 5.8002 24 6 1.3145 1.7772 4.6065 25 1 -0.3633 0.5138 0.8901 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 1.8933 -0.5138 -0.8901 29 1 1.8933 -0.5139 0.8900 30 1 1.5816 1.6878 -2.0283 31 1 2.0955 3.1410 -1.1384 32 1 3.6756 3.5178 -4.4430 33 1 1.7595 0.4463 2.3356 34 1 3.7995 3.2629 2.8440 35 1 4.0530 4.4737 4.9664 36 1 1.0844 3.1985 8.1518 37 1 1.8718 4.3514 9.0863 38 1 0.8014 2.2197 6.6292 39 1 0.5505 1.0214 4.4993 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000049211073.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:19 Heat of formation + Delta-G solvation = -34.021667 kcal Electronic energy + Delta-G solvation = -22650.624957 eV Core-core repulsion = 19172.453363 eV Total energy + Delta-G solvation = -3478.171594 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.137 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.56020 -39.66579 -37.99840 -35.53907 -34.56560 -33.85008 -32.73467 -30.92085 -30.23986 -29.68291 -26.99856 -24.16774 -23.15187 -22.83339 -22.50718 -20.64419 -19.44719 -18.37477 -17.90816 -16.94781 -16.83384 -16.42553 -15.27874 -15.12334 -14.92899 -14.77883 -14.38390 -14.09036 -13.83287 -13.78348 -13.47004 -13.34093 -12.69524 -12.49604 -12.36493 -12.10542 -11.82061 -11.25271 -11.23770 -11.00021 -10.85241 -10.57263 -10.21062 -10.19566 -10.10586 -9.89060 -9.71753 -9.35632 -8.94636 -8.45869 -8.13502 -7.69992 -6.07049 -4.12224 0.83980 1.40866 2.79238 3.06816 3.30673 3.35648 3.38486 3.38972 3.66651 3.99136 4.27106 4.45384 4.71270 4.76816 4.91296 5.15716 5.27061 5.32005 5.42408 5.49565 5.58052 5.62415 5.87324 5.96850 6.09444 6.11931 6.32778 6.35374 6.39157 6.60864 6.63196 6.75051 7.10152 7.17057 7.28606 7.43124 7.57888 7.89890 8.12634 8.18809 8.46727 8.87616 9.12529 9.53280 11.00836 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.020374 B = 0.003645 C = 0.003217 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1373.938289 B = 7680.932378 C = 8701.647641 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.106 3.894 3 N -0.604 5.604 4 C 0.261 3.739 5 C -0.529 4.529 6 H 0.057 0.943 7 C 0.062 3.938 8 N -0.894 5.894 9 Si 0.898 3.102 10 H -0.277 1.277 11 H -0.286 1.286 12 H -0.276 1.276 13 C 0.697 3.303 14 O -0.563 6.563 15 N -0.695 5.695 16 C 0.213 3.787 17 C -0.132 4.132 18 C -0.035 4.035 19 C -0.177 4.177 20 C 0.568 3.432 21 N -0.856 5.856 22 O -0.545 6.545 23 C -0.065 4.065 24 C -0.168 4.168 25 H 0.050 0.950 26 H 0.063 0.937 27 H 0.061 0.939 28 H 0.088 0.912 29 H 0.057 0.943 30 H 0.035 0.965 31 H 0.045 0.955 32 H 0.264 0.736 33 H 0.404 0.596 34 H 0.153 0.847 35 H 0.137 0.863 36 H 0.399 0.601 37 H 0.402 0.598 38 H 0.125 0.875 39 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.323 -7.831 18.341 21.610 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.018 4.018 3 N -0.339 5.339 4 C 0.142 3.858 5 C -0.568 4.568 6 H 0.075 0.925 7 C -0.140 4.140 8 N -0.533 5.533 9 Si 0.726 3.274 10 H -0.203 1.203 11 H -0.212 1.212 12 H -0.201 1.201 13 C 0.398 3.602 14 O -0.439 6.439 15 N -0.344 5.344 16 C 0.114 3.886 17 C -0.152 4.152 18 C -0.055 4.055 19 C -0.181 4.181 20 C 0.355 3.645 21 N -0.420 5.420 22 O -0.423 6.423 23 C -0.084 4.084 24 C -0.189 4.189 25 H 0.069 0.931 26 H 0.083 0.917 27 H 0.080 0.920 28 H 0.106 0.894 29 H 0.075 0.925 30 H 0.053 0.947 31 H 0.063 0.937 32 H 0.074 0.926 33 H 0.241 0.759 34 H 0.171 0.829 35 H 0.154 0.846 36 H 0.229 0.771 37 H 0.232 0.768 38 H 0.143 0.857 39 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -7.448 -6.386 17.870 20.386 hybrid contribution 0.379 -0.891 -0.122 0.976 sum -7.069 -7.277 17.748 20.443 Atomic orbital electron populations 1.22247 0.96572 1.01524 1.02606 1.21390 0.93654 0.84254 1.02511 1.47649 1.66706 1.13302 1.06211 1.19253 0.96290 0.93525 0.76781 1.21404 0.96933 1.32158 1.06345 0.92502 1.24921 0.97864 0.94848 0.96348 1.69917 1.35753 1.33240 1.14400 0.86556 0.84764 0.78215 0.77867 1.20286 1.21163 1.20135 1.15959 0.79283 0.84829 0.80084 1.90910 1.50929 1.16696 1.85370 1.43003 1.73177 1.14353 1.03838 1.17824 0.92590 0.93227 0.84919 1.21519 0.98185 0.97218 0.98327 1.21183 0.96701 0.96877 0.90697 1.19723 1.01743 1.01732 0.94891 1.18280 0.80438 0.81824 0.83915 1.43757 1.37901 1.44418 1.15890 1.90817 1.34629 1.33502 1.83397 1.20896 0.96326 0.94340 0.96878 1.20757 1.00336 1.04263 0.93561 0.93079 0.91746 0.92028 0.89367 0.92472 0.94719 0.93672 0.92598 0.75906 0.82903 0.84552 0.77116 0.76761 0.85745 0.85330 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.08 10.24 37.16 0.38 -1.70 16 2 C 0.11 1.56 5.93 -4.04 -0.02 1.53 16 3 N -0.60 -12.16 2.46 -180.81 -0.44 -12.60 16 4 C 0.26 6.59 5.16 -5.19 -0.03 6.56 16 5 C -0.53 -14.66 9.39 -34.44 -0.32 -14.98 16 6 H 0.06 1.57 7.81 -52.49 -0.41 1.16 16 7 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 8 N -0.89 -26.20 13.29 55.43 0.74 -25.47 16 9 Si 0.90 21.64 29.54 -169.99 -5.02 16.62 16 10 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 11 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 12 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 13 C 0.70 14.11 8.12 -86.92 -0.71 13.41 16 14 O -0.56 -13.85 13.33 5.29 0.07 -13.78 16 15 N -0.69 -10.43 5.19 -14.22 -0.07 -10.51 16 16 C 0.21 3.08 6.30 -83.74 -0.53 2.55 16 17 C -0.13 -2.15 8.67 -39.46 -0.34 -2.49 16 18 C -0.03 -0.51 9.58 -39.22 -0.38 -0.89 16 19 C -0.18 -2.21 5.88 -104.95 -0.62 -2.82 16 20 C 0.57 7.03 8.04 -12.45 -0.10 6.93 16 21 N -0.86 -6.29 8.82 30.47 0.27 -6.02 16 22 O -0.55 -9.00 17.17 5.28 0.09 -8.91 16 23 C -0.06 -0.63 9.53 -39.22 -0.37 -1.01 16 24 C -0.17 -1.82 9.94 -39.46 -0.39 -2.21 16 25 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 26 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 27 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.09 1.36 8.07 -51.93 -0.42 0.94 16 29 H 0.06 0.67 6.30 -51.93 -0.33 0.34 16 30 H 0.03 0.88 8.07 -51.93 -0.42 0.46 16 31 H 0.05 1.30 7.42 -51.93 -0.39 0.92 16 32 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 33 H 0.40 4.67 6.51 -40.82 -0.27 4.40 16 34 H 0.15 2.93 6.21 -52.48 -0.33 2.60 16 35 H 0.14 2.02 7.64 -52.49 -0.40 1.62 16 36 H 0.40 1.72 6.85 -40.82 -0.28 1.44 16 37 H 0.40 2.39 8.93 -40.82 -0.36 2.03 16 38 H 0.12 0.70 6.39 -52.49 -0.34 0.37 16 39 H 0.13 1.03 8.06 -52.49 -0.42 0.60 16 LS Contribution 334.34 15.07 5.04 5.04 Total: -1.00 -35.53 334.34 -7.62 -43.15 By element: Atomic # 1 Polarization: 10.70 SS G_CDS: -4.76 Total: 5.94 kcal Atomic # 6 Polarization: 10.07 SS G_CDS: -3.52 Total: 6.54 kcal Atomic # 7 Polarization: -55.08 SS G_CDS: 0.49 Total: -54.60 kcal Atomic # 8 Polarization: -22.85 SS G_CDS: 0.16 Total: -22.69 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.62 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -35.53 -7.62 -43.15 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049211073.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.129 kcal (2) G-P(sol) polarization free energy of solvation -35.534 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.405 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.617 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.151 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.022 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds