Wall clock time and date at job start Tue Mar 31 2020 06:07:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46500 * 109.47321 * 2 1 4 4 C 1.46496 * 120.00202 * 270.00297 * 3 2 1 5 5 C 1.50703 * 109.47104 * 270.00190 * 4 3 2 6 6 H 1.08000 * 119.99911 * 359.97438 * 5 4 3 7 7 C 1.37873 * 119.99853 * 180.02562 * 5 4 3 8 8 N 1.31519 * 120.00419 * 359.97438 * 7 5 4 9 9 Si 1.86805 * 119.99831 * 179.97438 * 7 5 4 10 10 H 1.48500 * 109.46976 * 60.00389 * 9 7 5 11 11 H 1.48503 * 109.46817 * 179.97438 * 9 7 5 12 12 H 1.48496 * 109.47314 * 299.99971 * 9 7 5 13 13 C 1.34770 * 119.99672 * 90.00217 * 3 2 1 14 14 O 1.21588 * 119.99915 * 179.97438 * 13 3 2 15 15 N 1.34776 * 120.00191 * 0.02562 * 13 3 2 16 16 C 1.39435 * 119.99943 * 184.55513 * 15 13 3 17 17 C 1.39135 * 119.92714 * 324.84446 * 16 15 13 18 18 C 1.37661 * 120.07669 * 180.02562 * 17 16 15 19 19 C 1.39761 * 119.92299 * 359.97438 * 18 17 16 20 20 C 1.47584 * 120.07237 * 180.02562 * 19 18 17 21 21 N 1.34767 * 120.00174 * 179.97438 * 20 19 18 22 22 O 1.21592 * 119.99688 * 359.97438 * 20 19 18 23 23 C 1.39754 * 119.85389 * 0.27401 * 19 18 17 24 24 C 1.37667 * 119.92070 * 359.46796 * 23 19 18 25 25 H 1.09005 * 109.47057 * 299.99724 * 1 2 3 26 26 H 1.09000 * 109.47032 * 59.99617 * 1 2 3 27 27 H 1.08997 * 109.47430 * 179.97438 * 1 2 3 28 28 H 1.09005 * 109.47057 * 240.00276 * 2 1 3 29 29 H 1.09000 * 109.47032 * 120.00383 * 2 1 3 30 30 H 1.09006 * 109.47119 * 29.99964 * 4 3 2 31 31 H 1.08998 * 109.47588 * 149.99562 * 4 3 2 32 32 H 0.96996 * 119.99927 * 179.97438 * 8 7 5 33 33 H 0.96994 * 119.99932 * 4.55079 * 15 13 3 34 34 H 1.08007 * 119.96086 * 0.02562 * 17 16 15 35 35 H 1.08002 * 120.03818 * 179.97438 * 18 17 16 36 36 H 0.97008 * 119.99803 * 0.02562 * 21 20 19 37 37 H 0.96996 * 120.00263 * 179.72011 * 21 20 19 38 38 H 1.08001 * 120.03802 * 179.70520 * 23 19 18 39 39 H 1.08000 * 119.95947 * 180.25305 * 24 23 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0718 -1.2687 5 6 3.6857 1.8350 -1.7038 6 1 4.3428 1.2308 -1.0958 7 6 4.1493 2.3905 -2.8774 8 7 3.3493 3.1267 -3.6175 9 14 5.9137 2.0974 -3.4164 10 1 6.1414 0.6408 -3.5945 11 1 6.1611 2.7975 -4.7025 12 1 6.8409 2.6206 -2.3812 13 6 2.2430 2.0164 1.1672 14 8 2.6488 3.1626 1.1672 15 7 2.0189 1.3809 2.3344 16 6 2.1598 2.0670 3.5400 17 6 3.1453 3.0399 3.6739 18 6 3.2875 3.7188 4.8630 19 6 2.4402 3.4301 5.9363 20 6 2.5893 4.1562 7.2125 21 7 1.7711 3.8770 8.2463 22 8 3.4504 5.0065 7.3310 23 6 1.4547 2.4485 5.8002 24 6 1.3145 1.7772 4.6065 25 1 -0.3633 0.5138 0.8901 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 1.8933 -0.5138 -0.8901 29 1 1.8933 -0.5139 0.8900 30 1 1.5816 1.6878 -2.0283 31 1 2.0955 3.1410 -1.1384 32 1 3.6756 3.5178 -4.4430 33 1 1.7595 0.4463 2.3356 34 1 3.7995 3.2629 2.8440 35 1 4.0530 4.4737 4.9664 36 1 1.0844 3.1985 8.1518 37 1 1.8718 4.3514 9.0863 38 1 0.8014 2.2197 6.6292 39 1 0.5505 1.0214 4.4993 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000049211073.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:19 Heat of formation + Delta-G solvation = -61.275747 kcal Electronic energy + Delta-G solvation = -22651.806782 eV Core-core repulsion = 19172.453363 eV Total energy + Delta-G solvation = -3479.353420 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.137 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.85186 -40.81039 -39.16427 -37.08268 -35.93954 -34.89198 -34.61928 -31.93948 -31.62825 -30.88992 -28.81547 -25.62109 -24.58414 -23.97534 -23.81903 -21.68021 -20.83869 -19.47886 -19.06552 -18.56826 -18.24625 -17.72981 -16.89874 -16.50849 -16.09216 -15.99223 -15.79938 -15.36140 -15.21943 -14.85804 -14.66998 -14.47705 -14.27703 -13.71728 -13.62576 -13.56991 -13.26283 -13.10016 -12.69062 -12.53355 -12.29261 -12.19379 -11.94829 -11.76180 -11.42527 -11.25423 -10.91652 -10.69485 -10.63954 -9.98863 -9.61482 -9.08080 -8.22063 -6.36879 -0.20994 0.41306 1.36137 1.40553 1.47187 1.63120 1.80100 2.21128 2.38973 2.57960 2.90533 2.97585 3.08087 3.83685 3.94915 4.00131 4.05866 4.31489 4.36439 4.40325 4.54958 4.56797 4.84571 4.96654 4.99806 5.03286 5.12883 5.19280 5.29767 5.33121 5.38938 5.49770 5.56682 5.78814 5.89546 5.97122 6.05415 6.06709 6.46895 6.71943 7.02460 7.30160 7.33284 7.59776 8.84225 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.020374 B = 0.003645 C = 0.003217 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1373.938289 B = 7680.932378 C = 8701.647641 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.098 3.902 3 N -0.610 5.610 4 C 0.279 3.721 5 C -0.544 4.544 6 H 0.052 0.948 7 C 0.010 3.990 8 N -0.927 5.927 9 Si 0.965 3.035 10 H -0.259 1.259 11 H -0.279 1.279 12 H -0.281 1.281 13 C 0.692 3.308 14 O -0.619 6.619 15 N -0.672 5.672 16 C 0.189 3.811 17 C -0.158 4.158 18 C -0.054 4.054 19 C -0.177 4.177 20 C 0.565 3.435 21 N -0.825 5.825 22 O -0.597 6.597 23 C -0.043 4.043 24 C -0.145 4.145 25 H 0.059 0.941 26 H 0.039 0.961 27 H 0.099 0.901 28 H 0.079 0.921 29 H 0.095 0.905 30 H 0.029 0.971 31 H -0.003 1.003 32 H 0.267 0.733 33 H 0.423 0.577 34 H 0.109 0.891 35 H 0.117 0.883 36 H 0.419 0.581 37 H 0.413 0.587 38 H 0.182 0.818 39 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.249 -10.898 20.978 25.766 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.024 4.024 3 N -0.344 5.344 4 C 0.157 3.843 5 C -0.583 4.583 6 H 0.071 0.929 7 C -0.190 4.190 8 N -0.567 5.567 9 Si 0.789 3.211 10 H -0.183 1.183 11 H -0.204 1.204 12 H -0.207 1.207 13 C 0.394 3.606 14 O -0.499 6.499 15 N -0.322 5.322 16 C 0.092 3.908 17 C -0.179 4.179 18 C -0.074 4.074 19 C -0.182 4.182 20 C 0.353 3.647 21 N -0.390 5.390 22 O -0.479 6.479 23 C -0.062 4.062 24 C -0.166 4.166 25 H 0.078 0.922 26 H 0.058 0.942 27 H 0.118 0.882 28 H 0.097 0.903 29 H 0.113 0.887 30 H 0.047 0.953 31 H 0.015 0.985 32 H 0.076 0.924 33 H 0.264 0.736 34 H 0.127 0.873 35 H 0.135 0.865 36 H 0.252 0.748 37 H 0.245 0.755 38 H 0.199 0.801 39 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges -9.446 -9.557 20.583 24.581 hybrid contribution 0.906 0.061 -0.803 1.212 sum -8.540 -9.495 19.780 23.544 Atomic orbital electron populations 1.22171 0.94211 1.03733 1.01837 1.21753 0.95559 0.81125 1.03949 1.47499 1.67067 1.15256 1.04613 1.18642 0.95226 0.91336 0.79059 1.21702 0.98007 1.32080 1.06470 0.92930 1.25812 1.02193 0.94488 0.96463 1.70035 1.37740 1.34088 1.14847 0.85513 0.79207 0.79070 0.77282 1.18322 1.20365 1.20674 1.16159 0.78842 0.84330 0.81298 1.90885 1.53174 1.19409 1.86389 1.42552 1.72376 1.14980 1.02333 1.18077 0.93518 0.93551 0.85683 1.21207 0.99447 0.99517 0.97722 1.21052 0.97706 0.97126 0.91482 1.19875 1.01788 1.02351 0.94155 1.18311 0.80491 0.81257 0.84690 1.43484 1.36640 1.43973 1.14882 1.90804 1.37067 1.35815 1.84233 1.21456 0.95012 0.91701 0.98016 1.21195 0.99362 1.04110 0.91907 0.92205 0.94193 0.88191 0.90294 0.88682 0.95306 0.98485 0.92391 0.73568 0.87336 0.86466 0.74797 0.75482 0.80094 0.80797 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.54 10.24 71.98 0.74 -2.80 16 2 C 0.10 2.74 5.93 86.38 0.51 3.25 16 3 N -0.61 -25.20 2.46 -844.21 -2.07 -27.27 16 4 C 0.28 14.90 5.16 85.63 0.44 15.35 16 5 C -0.54 -31.28 9.39 25.60 0.24 -31.04 16 6 H 0.05 2.99 7.81 -2.91 -0.02 2.97 16 7 C 0.01 0.56 5.46 84.65 0.46 1.02 16 8 N -0.93 -56.20 13.29 21.45 0.28 -55.92 16 9 Si 0.96 45.22 29.54 68.60 2.03 47.25 16 10 H -0.26 -11.30 7.11 99.48 0.71 -10.59 16 11 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 12 H -0.28 -13.32 7.11 99.48 0.71 -12.62 16 13 C 0.69 28.98 8.12 179.06 1.45 30.43 16 14 O -0.62 -32.78 13.33 -3.99 -0.05 -32.83 16 15 N -0.67 -19.46 5.19 -317.17 -1.65 -21.10 16 16 C 0.19 5.27 6.30 38.36 0.24 5.51 16 17 C -0.16 -5.49 8.67 22.35 0.19 -5.30 16 18 C -0.05 -1.68 9.58 22.50 0.22 -1.46 16 19 C -0.18 -4.14 5.88 -20.08 -0.12 -4.26 16 20 C 0.57 13.02 8.04 86.71 0.70 13.72 16 21 N -0.82 -8.94 8.82 -175.78 -1.55 -10.49 16 22 O -0.60 -19.92 17.17 -4.01 -0.07 -19.99 16 23 C -0.04 -0.62 9.53 22.50 0.21 -0.41 16 24 C -0.15 -2.47 9.94 22.35 0.22 -2.25 16 25 H 0.06 1.22 8.14 -2.38 -0.02 1.20 16 26 H 0.04 1.07 8.14 -2.39 -0.02 1.05 16 27 H 0.10 1.46 8.14 -2.39 -0.02 1.44 16 28 H 0.08 2.36 8.07 -2.38 -0.02 2.34 16 29 H 0.10 1.91 6.30 -2.39 -0.02 1.89 16 30 H 0.03 1.55 8.07 -2.38 -0.02 1.53 16 31 H 0.00 -0.19 7.42 -2.39 -0.02 -0.20 16 32 H 0.27 15.24 8.31 -92.71 -0.77 14.47 16 33 H 0.42 8.45 6.51 -92.71 -0.60 7.84 16 34 H 0.11 4.71 6.21 -2.91 -0.02 4.69 16 35 H 0.12 3.94 7.64 -2.91 -0.02 3.92 16 36 H 0.42 1.21 6.85 -92.70 -0.63 0.57 16 37 H 0.41 3.47 8.93 -92.71 -0.83 2.64 16 38 H 0.18 0.60 6.39 -2.91 -0.02 0.59 16 39 H 0.17 1.48 8.06 -2.91 -0.02 1.46 16 Total: -1.00 -86.81 334.34 1.48 -85.33 By element: Atomic # 1 Polarization: 14.22 SS G_CDS: -0.95 Total: 13.27 kcal Atomic # 6 Polarization: 16.25 SS G_CDS: 5.51 Total: 21.76 kcal Atomic # 7 Polarization: -109.80 SS G_CDS: -4.99 Total: -114.79 kcal Atomic # 8 Polarization: -52.70 SS G_CDS: -0.12 Total: -52.82 kcal Atomic # 14 Polarization: 45.22 SS G_CDS: 2.03 Total: 47.25 kcal Total: -86.81 1.48 -85.33 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049211073.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.050 kcal (2) G-P(sol) polarization free energy of solvation -86.807 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.756 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.481 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.326 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.276 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds