Wall clock time and date at job start Tue Mar 31 2020 06:35:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46500 * 119.99913 * 2 1 4 4 C 1.50707 * 109.47151 * 89.99845 * 3 2 1 5 5 H 1.07996 * 119.99991 * 359.97438 * 4 3 2 6 6 C 1.37879 * 119.99573 * 180.02562 * 4 3 2 7 7 N 1.31513 * 120.00057 * 359.97438 * 6 4 3 8 8 Si 1.86800 * 119.99545 * 180.02562 * 6 4 3 9 9 H 1.48496 * 109.47374 * 359.97438 * 8 6 4 10 10 H 1.48492 * 109.47384 * 119.99758 * 8 6 4 11 11 H 1.48504 * 109.46495 * 239.99832 * 8 6 4 12 12 C 1.34775 * 120.00049 * 179.97438 * 2 1 3 13 13 O 1.21280 * 119.99897 * 185.15026 * 12 2 1 14 14 C 1.50707 * 120.00128 * 5.15198 * 12 2 1 15 15 C 1.50699 * 112.84444 * 296.91795 * 14 12 2 16 16 C 1.38265 * 119.99074 * 302.93514 * 15 14 12 17 17 C 1.38227 * 120.04999 * 180.02562 * 16 15 14 18 18 C 1.38212 * 120.02649 * 359.97438 * 17 16 15 19 19 C 1.38435 * 119.97986 * 0.02562 * 18 17 16 20 20 F 1.35098 * 120.03366 * 180.02562 * 19 18 17 21 21 C 1.38181 * 119.98318 * 122.66246 * 15 14 12 22 22 C 1.53777 * 113.61529 * 165.72117 * 14 12 2 23 23 C 1.54046 * 86.98708 * 270.83825 * 22 14 12 24 24 C 1.53778 * 113.61144 * 68.11102 * 14 12 2 25 25 H 1.09004 * 109.47663 * 264.67693 * 1 2 3 26 26 H 1.08996 * 109.47305 * 24.67692 * 1 2 3 27 27 H 1.09005 * 109.47325 * 144.67611 * 1 2 3 28 28 H 1.08996 * 109.47093 * 209.99486 * 3 2 1 29 29 H 1.09000 * 109.46963 * 329.99951 * 3 2 1 30 30 H 0.97005 * 119.99494 * 180.02562 * 7 6 4 31 31 H 1.07996 * 119.97240 * 0.02562 * 16 15 14 32 32 H 1.07998 * 119.98359 * 179.97438 * 17 16 15 33 33 H 1.08003 * 120.01294 * 180.02562 * 18 17 16 34 34 H 1.08000 * 120.01321 * 359.97438 * 21 15 14 35 35 H 1.09001 * 113.61222 * 25.43871 * 22 14 12 36 36 H 1.08997 * 113.61260 * 156.33093 * 22 14 12 37 37 H 1.08998 * 113.61805 * 220.02451 * 23 22 14 38 38 H 1.09004 * 113.68927 * 89.12470 * 23 22 14 39 39 H 1.09003 * 113.61187 * 203.66229 * 24 14 12 40 40 H 1.08999 * 113.61910 * 334.57252 * 24 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2687 0.0000 4 6 2.4486 1.7038 1.4209 5 1 2.0973 1.0963 2.2417 6 6 3.1259 2.8781 1.6727 7 7 3.5532 3.6181 0.6731 8 14 3.4378 3.4170 3.4339 9 1 2.8608 2.4166 4.3673 10 1 4.9003 3.5259 3.6666 11 1 2.7996 4.7374 3.6678 12 6 2.1388 -1.1672 0.0005 13 8 3.3480 -1.1692 0.0948 14 6 1.3899 -2.4698 -0.1161 15 6 0.4595 -2.7155 1.0436 16 6 0.9537 -2.7315 2.3348 17 6 0.1014 -2.9574 3.3994 18 6 -1.2460 -3.1670 3.1742 19 6 -1.7421 -3.1512 1.8819 20 9 -3.0591 -3.3554 1.6606 21 6 -0.8882 -2.9192 0.8165 22 6 2.2910 -3.6708 -0.4483 23 6 2.0495 -3.3377 -1.9328 24 6 0.7315 -2.6809 -1.4897 25 1 -0.3634 -0.0953 1.0232 26 1 -0.3634 0.9338 -0.4290 27 1 -0.3634 -0.8385 -0.5942 28 1 3.1499 1.1384 -0.5137 29 1 1.6083 2.0284 -0.5138 30 1 4.0300 4.4441 0.8503 31 1 2.0063 -2.5674 2.5117 32 1 0.4886 -2.9700 4.4075 33 1 -1.9118 -3.3430 4.0062 34 1 -1.2748 -2.9019 -0.1918 35 1 3.3261 -3.5405 -0.1327 36 1 1.8716 -4.6291 -0.1420 37 1 1.9094 -4.2176 -2.5606 38 1 2.7710 -2.6331 -2.3465 39 1 -0.1135 -3.3691 -1.4677 40 1 0.5085 -1.7519 -2.0145 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000071837090.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:35:40 Heat of formation + Delta-G solvation = -29.470267 kcal Electronic energy + Delta-G solvation = -23943.067409 eV Core-core repulsion = 20445.173217 eV Total energy + Delta-G solvation = -3497.894192 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.138 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -48.90446 -40.92848 -38.37949 -36.91933 -34.85637 -32.60477 -31.33018 -30.54480 -28.06255 -26.49126 -25.69197 -25.37304 -23.10602 -22.56733 -21.81861 -20.26769 -18.13798 -17.55319 -16.52347 -16.34204 -16.09439 -15.73510 -15.60511 -15.47661 -15.13976 -14.57648 -14.10735 -13.91424 -13.79114 -13.30133 -12.79467 -12.41969 -12.37067 -12.25666 -12.10691 -11.90699 -11.83358 -11.67228 -11.37313 -11.16956 -10.88881 -10.75530 -10.58449 -10.40477 -10.21061 -10.15094 -9.61851 -9.21817 -8.81518 -8.50989 -8.43983 -7.65286 -6.04633 -4.08660 1.15630 1.19715 3.26437 3.29419 3.36999 3.41507 3.55849 3.87066 4.21381 4.43501 4.51047 4.62023 4.68946 4.82520 4.86620 4.97202 5.12626 5.23661 5.29905 5.34556 5.50903 5.65299 5.66849 5.77582 5.83516 5.91593 5.97200 6.05122 6.06963 6.17140 6.18038 6.25618 6.32389 6.44882 6.53176 6.88430 7.03989 7.39833 7.53201 7.91723 8.22834 8.38971 8.89109 9.05941 9.56218 11.03599 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.014885 B = 0.005788 C = 0.004839 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1880.659131 B = 4836.349093 C = 5784.776298 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.593 5.593 3 C 0.245 3.755 4 C -0.522 4.522 5 H 0.058 0.942 6 C 0.060 3.940 7 N -0.896 5.896 8 Si 0.897 3.103 9 H -0.273 1.273 10 H -0.283 1.283 11 H -0.284 1.284 12 C 0.534 3.466 13 O -0.533 6.533 14 C -0.071 4.071 15 C -0.026 4.026 16 C -0.113 4.113 17 C -0.086 4.086 18 C -0.159 4.159 19 C 0.096 3.904 20 F -0.143 7.143 21 C -0.152 4.152 22 C -0.112 4.112 23 C -0.138 4.138 24 C -0.131 4.131 25 H 0.047 0.953 26 H 0.068 0.932 27 H 0.059 0.941 28 H 0.042 0.958 29 H 0.033 0.967 30 H 0.262 0.738 31 H 0.131 0.869 32 H 0.132 0.868 33 H 0.132 0.868 34 H 0.138 0.862 35 H 0.087 0.913 36 H 0.084 0.916 37 H 0.070 0.930 38 H 0.085 0.915 39 H 0.092 0.908 40 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.054 -15.223 -0.960 18.268 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.323 5.323 3 C 0.127 3.873 4 C -0.561 4.561 5 H 0.076 0.924 6 C -0.141 4.141 7 N -0.535 5.535 8 Si 0.724 3.276 9 H -0.198 1.198 10 H -0.209 1.209 11 H -0.210 1.210 12 C 0.319 3.681 13 O -0.410 6.410 14 C -0.074 4.074 15 C -0.026 4.026 16 C -0.131 4.131 17 C -0.104 4.104 18 C -0.178 4.178 19 C 0.077 3.923 20 F -0.122 7.122 21 C -0.170 4.170 22 C -0.150 4.150 23 C -0.175 4.175 24 C -0.168 4.168 25 H 0.066 0.934 26 H 0.086 0.914 27 H 0.077 0.923 28 H 0.060 0.940 29 H 0.051 0.949 30 H 0.072 0.928 31 H 0.149 0.851 32 H 0.150 0.850 33 H 0.150 0.850 34 H 0.156 0.844 35 H 0.106 0.894 36 H 0.103 0.897 37 H 0.089 0.911 38 H 0.104 0.896 39 H 0.110 0.890 40 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -9.369 -15.011 -0.966 17.721 hybrid contribution -0.231 0.539 1.097 1.244 sum -9.599 -14.472 0.131 17.367 Atomic orbital electron populations 1.21811 0.81464 1.01897 1.01059 1.48033 1.06132 1.07503 1.70681 1.19343 0.92405 0.77961 0.97641 1.21447 1.36171 1.06141 0.92290 0.92420 1.24929 0.95421 0.96402 0.97382 1.69940 1.38580 1.14370 1.30623 0.86461 0.78064 0.78332 0.84699 1.19809 1.20857 1.20976 1.19353 0.87307 0.83830 0.77634 1.90668 1.13854 1.86567 1.49893 1.21059 0.96615 0.96227 0.93508 1.19261 0.92428 0.96897 0.94037 1.21174 1.01009 0.99156 0.91765 1.20992 0.92298 0.97575 0.99492 1.21103 0.96768 1.04549 0.95387 1.17598 0.77738 1.02836 0.94161 1.91483 1.32458 1.92614 1.95620 1.21022 0.92945 1.04155 0.98892 1.22877 1.00749 0.95462 0.95866 1.22847 0.97326 1.00836 0.96522 1.23133 0.97873 1.01698 0.94122 0.93411 0.91353 0.92259 0.93958 0.94940 0.92794 0.85112 0.84991 0.85023 0.84437 0.89431 0.89700 0.91113 0.89615 0.89001 0.90380 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.38 8.90 59.84 0.53 1.91 16 2 N -0.59 -12.59 2.86 -182.95 -0.52 -13.12 16 3 C 0.25 6.42 5.16 -5.19 -0.03 6.40 16 4 C -0.52 -14.86 9.39 -34.44 -0.32 -15.18 16 5 H 0.06 1.66 7.81 -52.49 -0.41 1.25 16 6 C 0.06 1.73 5.46 -17.82 -0.10 1.64 16 7 N -0.90 -26.66 13.29 55.43 0.74 -25.93 16 8 Si 0.90 21.99 29.54 -169.99 -5.02 16.97 16 9 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 10 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 11 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 12 C 0.53 10.91 6.08 -10.98 -0.07 10.84 16 13 O -0.53 -13.11 15.55 5.56 0.09 -13.02 16 14 C -0.07 -1.06 0.47 -156.00 -0.07 -1.13 16 15 C -0.03 -0.36 3.52 -104.63 -0.37 -0.73 16 16 C -0.11 -1.63 9.39 -39.58 -0.37 -2.00 16 17 C -0.09 -1.05 10.04 -39.59 -0.40 -1.45 16 18 C -0.16 -1.86 10.03 -39.52 -0.40 -2.26 16 19 C 0.10 1.19 7.30 -39.42 -0.29 0.91 16 20 F -0.14 -1.80 17.27 2.25 0.04 -1.76 16 21 C -0.15 -1.87 7.79 -39.51 -0.31 -2.18 16 22 C -0.11 -1.50 7.08 -25.78 -0.18 -1.68 16 23 C -0.14 -1.69 7.81 -25.78 -0.20 -1.89 16 24 C -0.13 -1.58 5.31 -25.92 -0.14 -1.71 16 25 H 0.05 0.82 7.89 -51.93 -0.41 0.41 16 26 H 0.07 1.11 7.83 -51.93 -0.41 0.70 16 27 H 0.06 0.81 3.87 -51.93 -0.20 0.61 16 28 H 0.04 1.24 7.50 -51.93 -0.39 0.85 16 29 H 0.03 0.86 7.86 -51.93 -0.41 0.45 16 30 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 31 H 0.13 2.05 8.06 -52.49 -0.42 1.63 16 32 H 0.13 1.33 8.06 -52.49 -0.42 0.91 16 33 H 0.13 1.25 8.06 -52.48 -0.42 0.83 16 34 H 0.14 1.45 5.88 -52.49 -0.31 1.14 16 35 H 0.09 1.34 7.34 -51.93 -0.38 0.96 16 36 H 0.08 0.95 8.09 -51.93 -0.42 0.53 16 37 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.09 1.20 8.14 -51.93 -0.42 0.78 16 39 H 0.09 0.89 6.33 -51.93 -0.33 0.56 16 40 H 0.08 0.97 7.03 -51.93 -0.37 0.61 16 LS Contribution 329.75 15.07 4.97 4.97 Total: -1.00 -32.31 329.75 -7.70 -40.00 By element: Atomic # 1 Polarization: 5.67 SS G_CDS: -5.28 Total: 0.40 kcal Atomic # 6 Polarization: -5.81 SS G_CDS: -2.71 Total: -8.52 kcal Atomic # 7 Polarization: -39.26 SS G_CDS: 0.21 Total: -39.04 kcal Atomic # 8 Polarization: -13.11 SS G_CDS: 0.09 Total: -13.02 kcal Atomic # 9 Polarization: -1.80 SS G_CDS: 0.04 Total: -1.76 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.97 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -32.31 -7.70 -40.00 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071837090.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.532 kcal (2) G-P(sol) polarization free energy of solvation -32.307 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.775 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.695 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.002 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.470 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds