Wall clock time and date at job start Tue Mar 31 2020 06:35:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46500 * 119.99913 * 2 1 4 4 C 1.50707 * 109.47151 * 89.99845 * 3 2 1 5 5 H 1.07996 * 119.99991 * 359.97438 * 4 3 2 6 6 C 1.37879 * 119.99573 * 180.02562 * 4 3 2 7 7 N 1.31513 * 120.00057 * 359.97438 * 6 4 3 8 8 Si 1.86800 * 119.99545 * 180.02562 * 6 4 3 9 9 H 1.48496 * 109.47374 * 359.97438 * 8 6 4 10 10 H 1.48492 * 109.47384 * 119.99758 * 8 6 4 11 11 H 1.48504 * 109.46495 * 239.99832 * 8 6 4 12 12 C 1.34775 * 120.00049 * 179.97438 * 2 1 3 13 13 O 1.21280 * 119.99897 * 185.15026 * 12 2 1 14 14 C 1.50707 * 120.00128 * 5.15198 * 12 2 1 15 15 C 1.50699 * 112.84444 * 296.91795 * 14 12 2 16 16 C 1.38265 * 119.99074 * 302.93514 * 15 14 12 17 17 C 1.38227 * 120.04999 * 180.02562 * 16 15 14 18 18 C 1.38212 * 120.02649 * 359.97438 * 17 16 15 19 19 C 1.38435 * 119.97986 * 0.02562 * 18 17 16 20 20 F 1.35098 * 120.03366 * 180.02562 * 19 18 17 21 21 C 1.38181 * 119.98318 * 122.66246 * 15 14 12 22 22 C 1.53777 * 113.61529 * 165.72117 * 14 12 2 23 23 C 1.54046 * 86.98708 * 270.83825 * 22 14 12 24 24 C 1.53778 * 113.61144 * 68.11102 * 14 12 2 25 25 H 1.09004 * 109.47663 * 264.67693 * 1 2 3 26 26 H 1.08996 * 109.47305 * 24.67692 * 1 2 3 27 27 H 1.09005 * 109.47325 * 144.67611 * 1 2 3 28 28 H 1.08996 * 109.47093 * 209.99486 * 3 2 1 29 29 H 1.09000 * 109.46963 * 329.99951 * 3 2 1 30 30 H 0.97005 * 119.99494 * 180.02562 * 7 6 4 31 31 H 1.07996 * 119.97240 * 0.02562 * 16 15 14 32 32 H 1.07998 * 119.98359 * 179.97438 * 17 16 15 33 33 H 1.08003 * 120.01294 * 180.02562 * 18 17 16 34 34 H 1.08000 * 120.01321 * 359.97438 * 21 15 14 35 35 H 1.09001 * 113.61222 * 25.43871 * 22 14 12 36 36 H 1.08997 * 113.61260 * 156.33093 * 22 14 12 37 37 H 1.08998 * 113.61805 * 220.02451 * 23 22 14 38 38 H 1.09004 * 113.68927 * 89.12470 * 23 22 14 39 39 H 1.09003 * 113.61187 * 203.66229 * 24 14 12 40 40 H 1.08999 * 113.61910 * 334.57252 * 24 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2687 0.0000 4 6 2.4486 1.7038 1.4209 5 1 2.0973 1.0963 2.2417 6 6 3.1259 2.8781 1.6727 7 7 3.5532 3.6181 0.6731 8 14 3.4378 3.4170 3.4339 9 1 2.8608 2.4166 4.3673 10 1 4.9003 3.5259 3.6666 11 1 2.7996 4.7374 3.6678 12 6 2.1388 -1.1672 0.0005 13 8 3.3480 -1.1692 0.0948 14 6 1.3899 -2.4698 -0.1161 15 6 0.4595 -2.7155 1.0436 16 6 0.9537 -2.7315 2.3348 17 6 0.1014 -2.9574 3.3994 18 6 -1.2460 -3.1670 3.1742 19 6 -1.7421 -3.1512 1.8819 20 9 -3.0591 -3.3554 1.6606 21 6 -0.8882 -2.9192 0.8165 22 6 2.2910 -3.6708 -0.4483 23 6 2.0495 -3.3377 -1.9328 24 6 0.7315 -2.6809 -1.4897 25 1 -0.3634 -0.0953 1.0232 26 1 -0.3634 0.9338 -0.4290 27 1 -0.3634 -0.8385 -0.5942 28 1 3.1499 1.1384 -0.5137 29 1 1.6083 2.0284 -0.5138 30 1 4.0300 4.4441 0.8503 31 1 2.0063 -2.5674 2.5117 32 1 0.4886 -2.9700 4.4075 33 1 -1.9118 -3.3430 4.0062 34 1 -1.2748 -2.9019 -0.1918 35 1 3.3261 -3.5405 -0.1327 36 1 1.8716 -4.6291 -0.1420 37 1 1.9094 -4.2176 -2.5606 38 1 2.7710 -2.6331 -2.3465 39 1 -0.1135 -3.3691 -1.4677 40 1 0.5085 -1.7519 -2.0145 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000071837090.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:35:39 Heat of formation + Delta-G solvation = -47.929715 kcal Electronic energy + Delta-G solvation = -23943.867871 eV Core-core repulsion = 20445.173217 eV Total energy + Delta-G solvation = -3498.694654 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.138 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -49.85230 -42.18584 -39.63076 -38.21480 -36.63989 -34.73092 -32.36719 -31.53874 -30.00623 -27.82765 -26.92714 -26.74180 -24.92168 -23.56188 -22.92277 -21.65194 -19.42320 -18.86556 -18.58677 -17.46689 -17.26837 -17.11966 -16.85368 -16.57709 -16.51164 -16.21575 -15.51734 -15.35506 -14.85735 -14.35339 -14.29541 -14.12055 -13.76995 -13.59121 -13.51539 -13.34182 -13.09437 -12.94203 -12.82015 -12.68054 -12.53334 -12.28644 -12.23873 -11.86111 -11.72325 -11.43599 -11.27320 -10.69545 -10.66907 -9.86656 -9.61359 -9.47200 -8.24824 -6.38936 0.14817 0.22742 1.33434 1.35577 1.47352 1.72196 2.24802 2.39639 2.57659 3.04635 3.21518 3.41860 3.54368 3.60149 3.70041 3.82953 4.00442 4.11781 4.18951 4.34938 4.38573 4.45987 4.60734 4.73737 4.76316 4.83938 4.87722 4.97540 4.98789 5.04395 5.09767 5.11313 5.13542 5.17278 5.32859 5.45589 5.51935 5.54539 5.80539 5.91455 6.03515 6.66176 6.74198 7.25152 7.42651 8.82503 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.014885 B = 0.005788 C = 0.004839 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1880.659131 B = 4836.349093 C = 5784.776298 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.081 3.919 2 N -0.600 5.600 3 C 0.260 3.740 4 C -0.539 4.539 5 H 0.049 0.951 6 C 0.009 3.991 7 N -0.928 5.928 8 Si 0.965 3.035 9 H -0.268 1.268 10 H -0.280 1.280 11 H -0.268 1.268 12 C 0.527 3.473 13 O -0.588 6.588 14 C -0.071 4.071 15 C -0.035 4.035 16 C -0.136 4.136 17 C -0.086 4.086 18 C -0.153 4.153 19 C 0.093 3.907 20 F -0.141 7.141 21 C -0.144 4.144 22 C -0.111 4.111 23 C -0.135 4.135 24 C -0.118 4.118 25 H 0.046 0.954 26 H 0.073 0.927 27 H 0.096 0.904 28 H -0.001 1.001 29 H 0.026 0.974 30 H 0.267 0.733 31 H 0.104 0.896 32 H 0.150 0.850 33 H 0.157 0.843 34 H 0.162 0.838 35 H 0.056 0.944 36 H 0.115 0.885 37 H 0.105 0.895 38 H 0.056 0.944 39 H 0.131 0.869 40 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.778 -16.746 -0.291 21.067 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.330 5.330 3 C 0.138 3.862 4 C -0.577 4.577 5 H 0.067 0.933 6 C -0.190 4.190 7 N -0.568 5.568 8 Si 0.789 3.211 9 H -0.193 1.193 10 H -0.206 1.206 11 H -0.193 1.193 12 C 0.316 3.684 13 O -0.469 6.469 14 C -0.075 4.075 15 C -0.036 4.036 16 C -0.155 4.155 17 C -0.103 4.103 18 C -0.171 4.171 19 C 0.074 3.926 20 F -0.120 7.120 21 C -0.162 4.162 22 C -0.148 4.148 23 C -0.172 4.172 24 C -0.155 4.155 25 H 0.065 0.935 26 H 0.091 0.909 27 H 0.114 0.886 28 H 0.017 0.983 29 H 0.044 0.956 30 H 0.076 0.924 31 H 0.122 0.878 32 H 0.168 0.832 33 H 0.175 0.825 34 H 0.179 0.821 35 H 0.075 0.925 36 H 0.133 0.867 37 H 0.123 0.877 38 H 0.075 0.925 39 H 0.149 0.851 40 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -12.138 -16.550 -0.305 20.527 hybrid contribution 0.626 0.994 0.900 1.480 sum -11.512 -15.557 0.595 19.362 Atomic orbital electron populations 1.22018 0.78524 1.03802 1.01772 1.48020 1.07928 1.06263 1.70771 1.18822 0.91033 0.80194 0.96114 1.21668 1.36665 1.06425 0.92955 0.93306 1.25825 0.94920 0.96390 1.01888 1.70048 1.39004 1.14836 1.32871 0.85410 0.77979 0.78429 0.79285 1.19279 1.20564 1.19302 1.20345 0.87014 0.85353 0.75733 1.90627 1.16608 1.87627 1.52043 1.20924 0.97312 0.93168 0.96056 1.19135 0.93005 0.98284 0.93156 1.21166 1.00262 1.00869 0.93156 1.21174 0.92470 0.96946 0.99756 1.21383 0.96607 1.03042 0.96118 1.17698 0.77799 1.02665 0.94462 1.91495 1.32289 1.92570 1.95626 1.21135 0.91781 1.03110 1.00163 1.22948 0.98961 0.96118 0.96787 1.22805 0.96768 1.01533 0.96099 1.23227 0.98752 1.02405 0.91156 0.93517 0.90870 0.88597 0.98312 0.95637 0.92361 0.87788 0.83204 0.82546 0.82056 0.92508 0.86687 0.87666 0.92508 0.85092 0.90656 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.66 8.90 127.77 1.14 3.80 16 2 N -0.60 -26.27 2.86 -851.12 -2.43 -28.71 16 3 C 0.26 14.29 5.16 85.64 0.44 14.74 16 4 C -0.54 -31.76 9.39 25.60 0.24 -31.52 16 5 H 0.05 2.89 7.81 -2.91 -0.02 2.87 16 6 C 0.01 0.51 5.46 84.66 0.46 0.97 16 7 N -0.93 -56.65 13.29 21.45 0.28 -56.37 16 8 Si 0.96 45.64 29.54 68.60 2.03 47.66 16 9 H -0.27 -12.37 7.11 99.48 0.71 -11.66 16 10 H -0.28 -13.06 7.11 99.48 0.71 -12.36 16 11 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 12 C 0.53 22.43 6.08 87.66 0.53 22.96 16 13 O -0.59 -31.07 15.55 -3.03 -0.05 -31.12 16 14 C -0.07 -2.09 0.47 -53.15 -0.03 -2.11 16 15 C -0.04 -0.93 3.52 -19.87 -0.07 -1.00 16 16 C -0.14 -3.88 9.39 22.27 0.21 -3.67 16 17 C -0.09 -1.95 10.04 22.26 0.22 -1.72 16 18 C -0.15 -3.09 10.03 22.31 0.22 -2.86 16 19 C 0.09 1.98 7.30 22.38 0.16 2.14 16 20 F -0.14 -3.00 17.27 44.97 0.78 -2.22 16 21 C -0.14 -3.04 7.79 22.32 0.17 -2.86 16 22 C -0.11 -2.89 7.08 31.21 0.22 -2.67 16 23 C -0.13 -3.09 7.81 31.21 0.24 -2.84 16 24 C -0.12 -2.52 5.31 31.12 0.17 -2.35 16 25 H 0.05 1.55 7.89 -2.38 -0.02 1.53 16 26 H 0.07 2.31 7.83 -2.39 -0.02 2.29 16 27 H 0.10 2.40 3.87 -2.38 -0.01 2.39 16 28 H 0.00 -0.08 7.50 -2.39 -0.02 -0.10 16 29 H 0.03 1.42 7.86 -2.39 -0.02 1.40 16 30 H 0.27 15.24 8.31 -92.70 -0.77 14.47 16 31 H 0.10 3.46 8.06 -2.91 -0.02 3.44 16 32 H 0.15 2.76 8.06 -2.91 -0.02 2.74 16 33 H 0.16 2.35 8.06 -2.91 -0.02 2.33 16 34 H 0.16 2.57 5.88 -2.91 -0.02 2.55 16 35 H 0.06 1.83 7.34 -2.39 -0.02 1.82 16 36 H 0.11 2.30 8.09 -2.39 -0.02 2.28 16 37 H 0.10 1.70 8.14 -2.39 -0.02 1.68 16 38 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 39 H 0.13 1.82 6.33 -2.39 -0.02 1.81 16 40 H 0.07 1.68 7.03 -2.39 -0.02 1.66 16 Total: -1.00 -74.25 329.75 6.00 -68.25 By element: Atomic # 1 Polarization: 10.46 SS G_CDS: 1.05 Total: 11.51 kcal Atomic # 6 Polarization: -13.35 SS G_CDS: 4.34 Total: -9.01 kcal Atomic # 7 Polarization: -82.93 SS G_CDS: -2.15 Total: -85.07 kcal Atomic # 8 Polarization: -31.07 SS G_CDS: -0.05 Total: -31.12 kcal Atomic # 9 Polarization: -3.00 SS G_CDS: 0.78 Total: -2.22 kcal Atomic # 14 Polarization: 45.64 SS G_CDS: 2.03 Total: 47.66 kcal Total: -74.25 6.00 -68.25 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071837090.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.322 kcal (2) G-P(sol) polarization free energy of solvation -74.254 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.932 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.002 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.251 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.930 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds