Wall clock time and date at job start Tue Mar 31 2020 06:37:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.37092 * 120.00225 * 2 1 4 4 H 1.07995 * 120.00559 * 172.03587 * 3 2 1 5 5 C 1.38949 * 119.99718 * 352.03229 * 3 2 1 6 6 N 1.31413 * 120.00325 * 5.70353 * 5 3 2 7 7 Si 1.86799 * 119.99956 * 185.69656 * 5 3 2 8 8 H 1.48504 * 109.47138 * 90.00690 * 7 5 3 9 9 H 1.48501 * 109.47246 * 210.00264 * 7 5 3 10 10 H 1.48496 * 109.47282 * 330.00079 * 7 5 3 11 11 C 1.34779 * 120.00014 * 179.97438 * 2 1 3 12 12 O 1.21291 * 120.00056 * 184.67978 * 11 2 1 13 13 C 1.50700 * 120.00000 * 4.68078 * 11 2 1 14 14 C 1.50708 * 110.01749 * 60.24960 * 13 11 2 15 15 C 1.38241 * 119.97316 * 185.40357 * 14 13 11 16 16 C 1.38203 * 120.02406 * 179.76735 * 15 14 13 17 17 C 1.38459 * 119.97016 * 0.50722 * 16 15 14 18 18 F 1.35103 * 120.02408 * 179.76724 * 17 16 15 19 19 C 1.38459 * 119.95287 * 359.74564 * 17 16 15 20 20 C 1.38203 * 119.97206 * 359.97438 * 19 17 16 21 21 C 1.54258 * 110.03403 * 181.69072 * 13 11 2 22 22 C 1.54894 * 104.19681 * 95.67810 * 21 13 11 23 23 C 1.54886 * 102.74976 * 37.94082 * 22 21 13 24 24 C 1.53877 * 110.03527 * 298.85960 * 13 11 2 25 25 H 1.08998 * 109.47177 * 180.96234 * 1 2 3 26 26 H 1.08998 * 109.47102 * 300.96122 * 1 2 3 27 27 H 1.08999 * 109.47276 * 60.96463 * 1 2 3 28 28 H 0.96998 * 120.00291 * 180.02562 * 6 5 3 29 29 H 1.08000 * 119.98892 * 0.02562 * 15 14 13 30 30 H 1.07993 * 120.01465 * 180.25651 * 16 15 14 31 31 H 1.08001 * 120.01457 * 180.02562 * 19 17 16 32 32 H 1.08000 * 119.98684 * 180.02562 * 20 19 17 33 33 H 1.09000 * 110.48926 * 337.00049 * 21 13 11 34 34 H 1.09003 * 110.49090 * 214.35160 * 21 13 11 35 35 H 1.08999 * 110.75075 * 279.62668 * 22 21 13 36 36 H 1.08996 * 110.75876 * 156.26057 * 22 21 13 37 37 H 1.08999 * 110.48093 * 80.73630 * 23 22 21 38 38 H 1.08998 * 110.48588 * 203.38167 * 23 22 21 39 39 H 1.09005 * 110.03722 * 121.42932 * 24 13 11 40 40 H 1.08998 * 110.02772 * 0.02562 * 24 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1505 1.1872 0.0000 4 1 3.2226 1.1918 0.1296 5 6 1.4658 2.3847 -0.1668 6 7 0.1525 2.3900 -0.2122 7 14 2.4122 3.9873 -0.3264 8 1 2.7103 4.2457 -1.7581 9 1 1.5947 5.1013 0.2178 10 1 3.6838 3.8892 0.4342 11 6 2.1389 -1.1672 0.0005 12 8 3.3488 -1.1689 0.0862 13 6 1.3892 -2.4702 -0.1054 14 6 0.6119 -2.5147 -1.3958 15 6 -0.2402 -3.5726 -1.6527 16 6 -0.9571 -3.6120 -2.8335 17 6 -0.8137 -2.5968 -3.7640 18 9 -1.5105 -2.6367 -4.9208 19 6 0.0439 -1.5404 -3.5079 20 6 0.7555 -1.5002 -2.3238 21 6 2.3757 -3.6543 -0.0405 22 6 2.3616 -4.0792 1.4490 23 6 0.8737 -3.9019 1.8410 24 6 0.4341 -2.6276 1.0908 25 1 -0.3633 -1.0275 0.0173 26 1 -0.3633 0.5287 0.8812 27 1 -0.3634 0.4988 -0.8985 28 1 -0.3255 3.2259 -0.3290 29 1 -0.3488 -4.3664 -0.9285 30 1 -1.6258 -4.4364 -3.0322 31 1 0.1562 -0.7478 -4.2329 32 1 1.4242 -0.6761 -2.1236 33 1 3.3749 -3.3351 -0.3367 34 1 2.0321 -4.4723 -0.6737 35 1 2.9985 -3.4242 2.0435 36 1 2.6682 -5.1196 1.5568 37 1 0.2877 -4.7598 1.5115 38 1 0.7769 -3.7633 2.9178 39 1 -0.5914 -2.7371 0.7381 40 1 0.5127 -1.7614 1.7477 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000072052367.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:37:29 Heat of formation + Delta-G solvation = -39.892369 kcal Electronic energy + Delta-G solvation = -24490.187102 eV Core-core repulsion = 20991.840974 eV Total energy + Delta-G solvation = -3498.346129 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.138 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -48.65635 -40.56685 -37.86970 -36.52425 -34.73169 -32.02262 -30.93345 -30.75135 -28.42076 -27.42384 -26.12701 -24.52365 -22.88270 -22.03418 -20.80648 -20.22565 -18.24104 -17.55987 -16.96130 -16.50793 -15.94728 -15.35174 -15.21925 -14.91463 -14.55855 -14.24004 -14.04688 -13.57575 -13.18154 -12.99913 -12.96425 -12.64870 -12.45297 -12.19421 -11.75958 -11.58514 -11.12200 -11.01149 -10.96373 -10.83532 -10.72812 -10.57062 -10.46708 -10.39503 -10.37724 -10.25018 -10.03608 -9.05959 -8.76786 -8.35050 -8.17552 -7.86796 -6.25290 -3.83862 1.40808 1.53550 3.13526 3.22919 3.27904 3.79674 3.87103 4.07853 4.50972 4.71596 4.83793 4.97603 5.06090 5.10063 5.13569 5.21441 5.38284 5.56382 5.66034 5.76620 5.79701 5.90076 5.93962 6.03472 6.14445 6.17545 6.22813 6.27038 6.31602 6.37037 6.49834 6.59451 6.63179 6.67556 6.76153 6.90067 7.10617 7.19161 7.43748 7.55036 8.05163 8.46439 9.16121 9.42476 9.95655 10.67263 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.012947 B = 0.007345 C = 0.005281 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2162.153842 B = 3811.435306 C = 5301.013686 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.105 3.895 2 N -0.444 5.444 3 C -0.304 4.304 4 H 0.104 0.896 5 C 0.029 3.971 6 N -0.884 5.884 7 Si 0.928 3.072 8 H -0.277 1.277 9 H -0.284 1.284 10 H -0.270 1.270 11 C 0.450 3.550 12 O -0.589 6.589 13 C -0.032 4.032 14 C -0.067 4.067 15 C -0.089 4.089 16 C -0.159 4.159 17 C 0.085 3.915 18 F -0.148 7.148 19 C -0.149 4.149 20 C -0.073 4.073 21 C -0.101 4.101 22 C -0.121 4.121 23 C -0.124 4.124 24 C -0.110 4.110 25 H 0.035 0.965 26 H 0.059 0.941 27 H 0.076 0.924 28 H 0.265 0.735 29 H 0.130 0.870 30 H 0.129 0.871 31 H 0.132 0.868 32 H 0.148 0.852 33 H 0.086 0.914 34 H 0.063 0.937 35 H 0.070 0.930 36 H 0.062 0.938 37 H 0.062 0.938 38 H 0.063 0.937 39 H 0.071 0.929 40 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.127 -10.932 -1.308 11.759 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.038 4.038 2 N -0.161 5.161 3 C -0.432 4.432 4 H 0.122 0.878 5 C -0.173 4.173 6 N -0.525 5.525 7 Si 0.755 3.245 8 H -0.203 1.203 9 H -0.209 1.209 10 H -0.195 1.195 11 C 0.238 3.762 12 O -0.475 6.475 13 C -0.036 4.036 14 C -0.068 4.068 15 C -0.107 4.107 16 C -0.178 4.178 17 C 0.066 3.934 18 F -0.126 7.126 19 C -0.168 4.168 20 C -0.091 4.091 21 C -0.138 4.138 22 C -0.159 4.159 23 C -0.162 4.162 24 C -0.148 4.148 25 H 0.053 0.947 26 H 0.078 0.922 27 H 0.094 0.906 28 H 0.076 0.924 29 H 0.148 0.852 30 H 0.147 0.853 31 H 0.150 0.850 32 H 0.166 0.834 33 H 0.105 0.895 34 H 0.082 0.918 35 H 0.089 0.911 36 H 0.080 0.920 37 H 0.081 0.919 38 H 0.082 0.918 39 H 0.089 0.911 40 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -3.735 -10.726 -1.319 11.434 hybrid contribution -0.082 1.060 -0.329 1.113 sum -3.818 -9.666 -1.648 10.523 Atomic orbital electron populations 1.22117 0.80302 0.97105 1.04299 1.43709 1.06032 1.04595 1.61803 1.19813 0.93823 0.82367 1.47155 0.87832 1.25306 0.95743 0.99599 0.96689 1.70180 1.05885 1.27211 1.49228 0.85887 0.79270 0.80706 0.78636 1.20344 1.20942 1.19463 1.19516 0.87668 0.84233 0.84785 1.90491 1.14049 1.86550 1.56381 1.20247 0.94955 0.96217 0.92139 1.19773 0.96917 0.94500 0.95604 1.20754 0.95722 0.98039 0.96230 1.20961 1.02986 0.99142 0.94724 1.17723 0.95263 0.97240 0.83182 1.91457 1.77553 1.96602 1.47020 1.21147 0.98153 0.98209 0.99259 1.21525 0.97681 0.98321 0.91561 1.22341 1.00243 0.94855 0.96395 1.22464 0.96314 1.00456 0.96631 1.22406 0.96561 0.97430 0.99758 1.22453 0.98053 0.98572 0.95733 0.94671 0.92244 0.90572 0.92392 0.85239 0.85266 0.85049 0.83400 0.89501 0.91814 0.91111 0.91967 0.91929 0.91845 0.91054 0.90757 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 2.33 6.06 59.85 0.36 2.70 16 2 N -0.44 -10.86 1.96 -122.20 -0.24 -11.10 16 3 C -0.30 -8.19 9.55 -14.94 -0.14 -8.33 16 4 H 0.10 2.95 7.19 -52.49 -0.38 2.57 16 5 C 0.03 0.74 5.46 -17.47 -0.10 0.64 16 6 N -0.88 -22.67 9.47 55.50 0.53 -22.14 16 7 Si 0.93 20.50 29.56 -169.99 -5.02 15.48 16 8 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 9 H -0.28 -6.18 7.11 56.52 0.40 -5.77 16 10 H -0.27 -6.00 7.11 56.52 0.40 -5.59 16 11 C 0.45 10.46 4.94 -10.98 -0.05 10.40 16 12 O -0.59 -15.65 14.97 5.55 0.08 -15.57 16 13 C -0.03 -0.57 0.46 -155.69 -0.07 -0.65 16 14 C -0.07 -1.14 3.32 -104.62 -0.35 -1.49 16 15 C -0.09 -1.25 8.03 -39.59 -0.32 -1.57 16 16 C -0.16 -2.17 10.03 -39.51 -0.40 -2.57 16 17 C 0.08 1.31 7.30 -39.42 -0.29 1.02 16 18 F -0.15 -2.26 17.27 2.25 0.04 -2.22 16 19 C -0.15 -2.48 10.03 -39.51 -0.40 -2.88 16 20 C -0.07 -1.35 7.32 -39.59 -0.29 -1.64 16 21 C -0.10 -1.63 5.65 -25.07 -0.14 -1.77 16 22 C -0.12 -1.72 6.91 -24.74 -0.17 -1.89 16 23 C -0.12 -1.61 6.83 -25.07 -0.17 -1.78 16 24 C -0.11 -1.74 4.01 -25.61 -0.10 -1.84 16 25 H 0.04 0.68 3.17 -51.93 -0.16 0.51 16 26 H 0.06 1.41 7.32 -51.93 -0.38 1.03 16 27 H 0.08 1.82 6.50 -51.93 -0.34 1.48 16 28 H 0.27 6.52 8.31 -40.82 -0.34 6.18 16 29 H 0.13 1.50 7.87 -52.49 -0.41 1.08 16 30 H 0.13 1.42 8.06 -52.49 -0.42 1.00 16 31 H 0.13 2.04 8.06 -52.49 -0.42 1.62 16 32 H 0.15 3.24 5.70 -52.49 -0.30 2.94 16 33 H 0.09 1.63 6.81 -51.93 -0.35 1.27 16 34 H 0.06 0.89 7.31 -51.93 -0.38 0.51 16 35 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 36 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 39 H 0.07 1.02 6.42 -51.93 -0.33 0.69 16 40 H 0.07 1.33 6.86 -51.93 -0.36 0.98 16 LS Contribution 312.61 15.07 4.71 4.71 Total: -1.00 -28.46 312.61 -7.60 -36.06 By element: Atomic # 1 Polarization: 11.49 SS G_CDS: -5.07 Total: 6.43 kcal Atomic # 6 Polarization: -9.02 SS G_CDS: -2.62 Total: -11.64 kcal Atomic # 7 Polarization: -33.53 SS G_CDS: 0.29 Total: -33.24 kcal Atomic # 8 Polarization: -15.65 SS G_CDS: 0.08 Total: -15.57 kcal Atomic # 9 Polarization: -2.26 SS G_CDS: 0.04 Total: -2.22 kcal Atomic # 14 Polarization: 20.50 SS G_CDS: -5.02 Total: 15.48 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -28.46 -7.60 -36.06 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072052367.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.835 kcal (2) G-P(sol) polarization free energy of solvation -28.461 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.297 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.596 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.057 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.892 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds