Wall clock time and date at job start Tue Mar 31 2020 06:37:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.37092 * 120.00225 * 2 1 4 4 H 1.07995 * 120.00559 * 172.03587 * 3 2 1 5 5 C 1.38949 * 119.99718 * 352.03229 * 3 2 1 6 6 N 1.31413 * 120.00325 * 5.70353 * 5 3 2 7 7 Si 1.86799 * 119.99956 * 185.69656 * 5 3 2 8 8 H 1.48504 * 109.47138 * 90.00690 * 7 5 3 9 9 H 1.48501 * 109.47246 * 210.00264 * 7 5 3 10 10 H 1.48496 * 109.47282 * 330.00079 * 7 5 3 11 11 C 1.34779 * 120.00014 * 179.97438 * 2 1 3 12 12 O 1.21291 * 120.00056 * 184.67978 * 11 2 1 13 13 C 1.50700 * 120.00000 * 4.68078 * 11 2 1 14 14 C 1.50708 * 110.01749 * 60.24960 * 13 11 2 15 15 C 1.38241 * 119.97316 * 185.40357 * 14 13 11 16 16 C 1.38203 * 120.02406 * 179.76735 * 15 14 13 17 17 C 1.38459 * 119.97016 * 0.50722 * 16 15 14 18 18 F 1.35103 * 120.02408 * 179.76724 * 17 16 15 19 19 C 1.38459 * 119.95287 * 359.74564 * 17 16 15 20 20 C 1.38203 * 119.97206 * 359.97438 * 19 17 16 21 21 C 1.54258 * 110.03403 * 181.69072 * 13 11 2 22 22 C 1.54894 * 104.19681 * 95.67810 * 21 13 11 23 23 C 1.54886 * 102.74976 * 37.94082 * 22 21 13 24 24 C 1.53877 * 110.03527 * 298.85960 * 13 11 2 25 25 H 1.08998 * 109.47177 * 180.96234 * 1 2 3 26 26 H 1.08998 * 109.47102 * 300.96122 * 1 2 3 27 27 H 1.08999 * 109.47276 * 60.96463 * 1 2 3 28 28 H 0.96998 * 120.00291 * 180.02562 * 6 5 3 29 29 H 1.08000 * 119.98892 * 0.02562 * 15 14 13 30 30 H 1.07993 * 120.01465 * 180.25651 * 16 15 14 31 31 H 1.08001 * 120.01457 * 180.02562 * 19 17 16 32 32 H 1.08000 * 119.98684 * 180.02562 * 20 19 17 33 33 H 1.09000 * 110.48926 * 337.00049 * 21 13 11 34 34 H 1.09003 * 110.49090 * 214.35160 * 21 13 11 35 35 H 1.08999 * 110.75075 * 279.62668 * 22 21 13 36 36 H 1.08996 * 110.75876 * 156.26057 * 22 21 13 37 37 H 1.08999 * 110.48093 * 80.73630 * 23 22 21 38 38 H 1.08998 * 110.48588 * 203.38167 * 23 22 21 39 39 H 1.09005 * 110.03722 * 121.42932 * 24 13 11 40 40 H 1.08998 * 110.02772 * 0.02562 * 24 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1505 1.1872 0.0000 4 1 3.2226 1.1918 0.1296 5 6 1.4658 2.3847 -0.1668 6 7 0.1525 2.3900 -0.2122 7 14 2.4122 3.9873 -0.3264 8 1 2.7103 4.2457 -1.7581 9 1 1.5947 5.1013 0.2178 10 1 3.6838 3.8892 0.4342 11 6 2.1389 -1.1672 0.0005 12 8 3.3488 -1.1689 0.0862 13 6 1.3892 -2.4702 -0.1054 14 6 0.6119 -2.5147 -1.3958 15 6 -0.2402 -3.5726 -1.6527 16 6 -0.9571 -3.6120 -2.8335 17 6 -0.8137 -2.5968 -3.7640 18 9 -1.5105 -2.6367 -4.9208 19 6 0.0439 -1.5404 -3.5079 20 6 0.7555 -1.5002 -2.3238 21 6 2.3757 -3.6543 -0.0405 22 6 2.3616 -4.0792 1.4490 23 6 0.8737 -3.9019 1.8410 24 6 0.4341 -2.6276 1.0908 25 1 -0.3633 -1.0275 0.0173 26 1 -0.3633 0.5287 0.8812 27 1 -0.3634 0.4988 -0.8985 28 1 -0.3255 3.2259 -0.3290 29 1 -0.3488 -4.3664 -0.9285 30 1 -1.6258 -4.4364 -3.0322 31 1 0.1562 -0.7478 -4.2329 32 1 1.4242 -0.6761 -2.1236 33 1 3.3749 -3.3351 -0.3367 34 1 2.0321 -4.4723 -0.6737 35 1 2.9985 -3.4242 2.0435 36 1 2.6682 -5.1196 1.5568 37 1 0.2877 -4.7598 1.5115 38 1 0.7769 -3.7633 2.9178 39 1 -0.5914 -2.7371 0.7381 40 1 0.5127 -1.7614 1.7477 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000072052367.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:37:29 Heat of formation + Delta-G solvation = -54.329393 kcal Electronic energy + Delta-G solvation = -24490.813139 eV Core-core repulsion = 20991.840974 eV Total energy + Delta-G solvation = -3498.972165 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.138 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -49.85844 -42.05616 -39.37026 -37.95301 -36.67421 -33.82268 -32.33308 -32.02621 -29.72096 -28.80262 -27.92820 -26.36445 -24.21094 -23.27213 -22.30998 -21.42703 -19.83325 -18.96890 -18.80022 -18.03049 -17.26210 -16.83152 -16.55381 -16.42340 -15.98109 -15.91913 -15.60227 -14.99893 -14.59624 -14.35303 -14.21565 -14.07779 -13.88338 -13.79069 -13.43971 -13.25557 -12.80912 -12.72923 -12.37980 -12.28917 -12.20374 -12.07896 -11.95070 -11.83401 -11.70186 -11.60043 -11.37830 -11.03280 -10.23560 -9.99713 -9.84984 -9.44149 -8.24549 -5.91552 0.16274 0.31775 1.32765 1.36587 1.48398 2.00827 2.22506 2.61325 3.02433 3.08930 3.30400 3.61857 3.67952 3.80167 3.90255 3.99194 4.10300 4.30162 4.40277 4.48546 4.55434 4.61617 4.73299 4.74788 4.86736 4.98679 5.00167 5.07416 5.12863 5.18267 5.19670 5.24401 5.28070 5.35816 5.42749 5.45634 5.54771 5.56269 5.62538 5.95973 6.04559 6.47844 7.16038 7.50374 8.04062 8.65338 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.012947 B = 0.007345 C = 0.005281 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2162.153842 B = 3811.435306 C = 5301.013686 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.127 3.873 2 N -0.455 5.455 3 C -0.342 4.342 4 H 0.074 0.926 5 C -0.002 4.002 6 N -0.894 5.894 7 Si 0.987 3.013 8 H -0.273 1.273 9 H -0.269 1.269 10 H -0.275 1.275 11 C 0.445 3.555 12 O -0.635 6.635 13 C -0.028 4.028 14 C -0.078 4.078 15 C -0.073 4.073 16 C -0.139 4.139 17 C 0.082 3.918 18 F -0.146 7.146 19 C -0.160 4.160 20 C -0.099 4.099 21 C -0.100 4.100 22 C -0.120 4.120 23 C -0.112 4.112 24 C -0.112 4.112 25 H 0.068 0.932 26 H 0.038 0.962 27 H 0.056 0.944 28 H 0.270 0.730 29 H 0.172 0.828 30 H 0.171 0.829 31 H 0.128 0.872 32 H 0.101 0.899 33 H 0.049 0.951 34 H 0.098 0.902 35 H 0.037 0.963 36 H 0.096 0.904 37 H 0.104 0.896 38 H 0.072 0.928 39 H 0.095 0.905 40 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.538 -13.937 -1.258 15.446 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.015 4.015 2 N -0.173 5.173 3 C -0.470 4.470 4 H 0.092 0.908 5 C -0.203 4.203 6 N -0.534 5.534 7 Si 0.811 3.189 8 H -0.199 1.199 9 H -0.194 1.194 10 H -0.200 1.200 11 C 0.234 3.766 12 O -0.524 6.524 13 C -0.031 4.031 14 C -0.079 4.079 15 C -0.090 4.090 16 C -0.158 4.158 17 C 0.063 3.937 18 F -0.125 7.125 19 C -0.178 4.178 20 C -0.118 4.118 21 C -0.137 4.137 22 C -0.157 4.157 23 C -0.149 4.149 24 C -0.149 4.149 25 H 0.086 0.914 26 H 0.057 0.943 27 H 0.074 0.926 28 H 0.080 0.920 29 H 0.189 0.811 30 H 0.188 0.812 31 H 0.146 0.854 32 H 0.120 0.880 33 H 0.068 0.932 34 H 0.116 0.884 35 H 0.056 0.944 36 H 0.114 0.886 37 H 0.122 0.878 38 H 0.091 0.909 39 H 0.114 0.886 40 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -6.176 -13.732 -1.269 15.110 hybrid contribution 0.705 1.985 -0.406 2.145 sum -5.472 -11.747 -1.676 13.067 Atomic orbital electron populations 1.21867 0.79044 0.98534 1.02098 1.43841 1.06804 1.04489 1.62134 1.19716 0.93062 0.84412 1.49787 0.90803 1.25983 0.96703 1.01873 0.95730 1.70277 1.06487 1.28078 1.48512 0.85029 0.77987 0.77321 0.78602 1.19858 1.19359 1.20026 1.20605 0.87557 0.85865 0.82540 1.90446 1.16376 1.87632 1.57897 1.20246 0.95577 0.93234 0.94049 1.19758 0.98048 0.95456 0.94622 1.21079 0.93640 0.97309 0.96986 1.21382 1.02161 0.98926 0.93285 1.17822 0.94878 0.97312 0.83727 1.91464 1.77374 1.96578 1.47087 1.21106 0.98821 0.99212 0.98709 1.21173 0.98696 0.98393 0.93503 1.22374 0.97833 0.94940 0.98598 1.22465 0.97193 1.01609 0.94448 1.22409 0.95483 0.96955 1.00057 1.22475 0.98707 0.99281 0.94482 0.91389 0.94327 0.92568 0.91960 0.81068 0.81186 0.85427 0.88048 0.93236 0.88375 0.94418 0.88564 0.87797 0.90894 0.88627 0.93862 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.13 5.88 6.06 127.77 0.77 6.66 16 2 N -0.46 -23.74 1.96 -658.91 -1.29 -25.03 16 3 C -0.34 -19.76 9.55 84.04 0.80 -18.96 16 4 H 0.07 4.59 7.19 -2.91 -0.02 4.57 16 5 C 0.00 -0.10 5.46 84.93 0.46 0.36 16 6 N -0.89 -47.26 9.47 21.66 0.21 -47.05 16 7 Si 0.99 43.48 29.56 68.60 2.03 45.51 16 8 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 9 H -0.27 -11.16 7.11 99.48 0.71 -10.46 16 10 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 11 C 0.44 21.89 4.94 87.66 0.43 22.32 16 12 O -0.64 -36.44 14.97 -3.06 -0.05 -36.49 16 13 C -0.03 -0.98 0.46 -52.95 -0.02 -1.01 16 14 C -0.08 -2.53 3.32 -19.86 -0.07 -2.59 16 15 C -0.07 -1.66 8.03 22.26 0.18 -1.48 16 16 C -0.14 -3.08 10.03 22.31 0.22 -2.86 16 17 C 0.08 2.31 7.30 22.38 0.16 2.47 16 18 F -0.15 -4.11 17.27 44.97 0.78 -3.33 16 19 C -0.16 -5.36 10.03 22.31 0.22 -5.13 16 20 C -0.10 -3.79 7.32 22.26 0.16 -3.63 16 21 C -0.10 -3.09 5.65 31.67 0.18 -2.92 16 22 C -0.12 -3.12 6.91 31.89 0.22 -2.90 16 23 C -0.11 -2.42 6.83 31.67 0.22 -2.21 16 24 C -0.11 -3.26 4.01 31.32 0.13 -3.14 16 25 H 0.07 2.63 3.17 -2.39 -0.01 2.62 16 26 H 0.04 1.90 7.32 -2.39 -0.02 1.88 16 27 H 0.06 2.80 6.50 -2.39 -0.02 2.78 16 28 H 0.27 13.45 8.31 -92.71 -0.77 12.68 16 29 H 0.17 2.59 7.87 -2.91 -0.02 2.56 16 30 H 0.17 2.49 8.06 -2.91 -0.02 2.47 16 31 H 0.13 4.18 8.06 -2.91 -0.02 4.16 16 32 H 0.10 4.84 5.70 -2.91 -0.02 4.82 16 33 H 0.05 1.91 6.81 -2.39 -0.02 1.89 16 34 H 0.10 2.35 7.31 -2.39 -0.02 2.33 16 35 H 0.04 1.21 8.14 -2.39 -0.02 1.19 16 36 H 0.10 1.87 8.14 -2.39 -0.02 1.85 16 37 H 0.10 1.49 8.14 -2.39 -0.02 1.47 16 38 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 39 H 0.10 2.32 6.42 -2.38 -0.02 2.31 16 40 H 0.04 1.53 6.86 -2.39 -0.02 1.52 16 Total: -1.00 -68.72 312.61 6.81 -61.91 By element: Atomic # 1 Polarization: 18.43 SS G_CDS: 1.06 Total: 19.48 kcal Atomic # 6 Polarization: -19.08 SS G_CDS: 4.08 Total: -15.00 kcal Atomic # 7 Polarization: -71.00 SS G_CDS: -1.09 Total: -72.09 kcal Atomic # 8 Polarization: -36.44 SS G_CDS: -0.05 Total: -36.49 kcal Atomic # 9 Polarization: -4.11 SS G_CDS: 0.78 Total: -3.33 kcal Atomic # 14 Polarization: 43.48 SS G_CDS: 2.03 Total: 45.51 kcal Total: -68.72 6.81 -61.91 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072052367.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.584 kcal (2) G-P(sol) polarization free energy of solvation -68.721 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.136 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.807 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.914 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.329 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds