Wall clock time and date at job start Tue Mar 31 2020 06:58:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31631 * 1 3 3 Si 1.86805 * 120.00265 * 2 1 4 4 H 1.48498 * 109.47148 * 239.99776 * 3 2 1 5 5 H 1.48502 * 109.46647 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47018 * 119.99186 * 3 2 1 7 7 C 1.38802 * 120.00348 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00337 * 180.02562 * 7 2 1 9 9 S 1.76208 * 119.99323 * 0.02562 * 7 2 1 10 10 C 1.81004 * 99.99553 * 179.97438 * 9 7 2 11 11 C 1.52995 * 109.46784 * 180.02562 * 10 9 7 12 12 C 1.53006 * 109.47001 * 179.97438 * 11 10 9 13 13 N 1.46897 * 109.47009 * 179.97438 * 12 11 10 14 14 C 1.46901 * 110.99994 * 170.00187 * 13 12 11 15 15 C 1.50707 * 109.47121 * 290.24166 * 14 13 12 16 16 C 1.38242 * 119.99739 * 95.85258 * 15 14 13 17 17 C 1.38233 * 119.99599 * 180.02562 * 16 15 14 18 18 C 1.38232 * 120.00385 * 359.95444 * 17 16 15 19 19 C 1.38230 * 119.99910 * 0.28253 * 18 17 16 20 20 C 1.38228 * 120.00283 * 275.87503 * 15 14 13 21 21 C 1.46899 * 111.00331 * 293.95575 * 13 12 11 22 22 C 1.53002 * 117.49774 * 239.64383 * 21 13 12 23 23 C 1.53006 * 117.49850 * 170.98593 * 21 13 12 24 24 H 0.96994 * 119.99698 * 0.02562 * 1 2 3 25 25 H 1.08995 * 109.47594 * 59.99994 * 10 9 7 26 26 H 1.09003 * 109.47179 * 299.99918 * 10 9 7 27 27 H 1.08997 * 109.47740 * 60.00107 * 11 10 9 28 28 H 1.08999 * 109.47709 * 299.99502 * 11 10 9 29 29 H 1.08999 * 109.46810 * 60.00380 * 12 11 10 30 30 H 1.08994 * 109.47477 * 300.00074 * 12 11 10 31 31 H 1.08995 * 109.47345 * 170.24485 * 14 13 12 32 32 H 1.08997 * 109.47021 * 50.24026 * 14 13 12 33 33 H 1.08002 * 119.99945 * 359.97438 * 16 15 14 34 34 H 1.08002 * 119.99537 * 179.97438 * 17 16 15 35 35 H 1.07998 * 120.00086 * 179.97438 * 18 17 16 36 36 H 1.07996 * 120.00365 * 179.72380 * 19 18 17 37 37 H 1.08006 * 119.99729 * 0.02562 * 20 15 14 38 38 H 1.08990 * 115.55107 * 25.31502 * 21 13 12 39 39 H 1.09000 * 117.50040 * 0.02562 * 22 21 13 40 40 H 1.09001 * 117.49887 * 145.02443 * 22 21 13 41 41 H 1.09002 * 117.49811 * 214.98132 * 23 21 13 42 42 H 1.09000 * 117.49509 * 359.97236 * 23 21 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6177 0.0000 4 1 3.1042 1.6963 -1.2125 5 1 1.2854 2.7464 -0.0006 6 1 3.1040 1.6964 1.2126 7 6 2.0104 -1.2020 0.0005 8 1 3.0904 -1.2020 0.0010 9 16 1.1293 -2.7280 0.0005 10 6 2.5159 -3.8914 0.0005 11 6 1.9793 -5.3242 -0.0001 12 6 3.1514 -6.3077 -0.0008 13 7 2.6362 -7.6834 -0.0008 14 6 3.7163 -8.6500 -0.2395 15 6 4.1918 -8.5303 -1.6645 16 6 5.2937 -7.7505 -1.9622 17 6 5.7295 -7.6402 -3.2694 18 6 5.0640 -8.3104 -4.2788 19 6 3.9592 -9.0862 -3.9817 20 6 3.5258 -9.1997 -2.6740 21 6 1.9306 -7.9814 1.2528 22 6 2.4625 -9.1347 2.1059 23 6 1.1529 -9.2967 1.3302 24 1 -0.4849 0.8400 -0.0004 25 1 3.1245 -3.7314 0.8905 26 1 3.1245 -3.7313 -0.8895 27 1 1.3709 -5.4840 -0.8903 28 1 1.3705 -5.4847 0.8896 29 1 3.7600 -6.1481 0.8893 30 1 3.7599 -6.1473 -0.8907 31 1 3.3455 -9.6598 -0.0639 32 1 4.5446 -8.4440 0.4384 33 1 5.8136 -7.2268 -1.1736 34 1 6.5902 -7.0306 -3.5021 35 1 5.4043 -8.2239 -5.3001 36 1 3.4365 -9.6062 -4.7709 37 1 2.6643 -9.8083 -2.4414 38 1 1.5149 -7.1195 1.7746 39 1 3.3363 -9.6721 1.7373 40 1 2.3964 -9.0317 3.1890 41 1 0.2257 -9.3002 1.9033 42 1 1.1644 -9.9407 0.4508 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000074980941.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:58:40 Heat of formation + Delta-G solvation = 45.420265 kcal Electronic energy + Delta-G solvation = -20197.460177 eV Core-core repulsion = 17269.026658 eV Total energy + Delta-G solvation = -2928.433519 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 291.135 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.87046 -38.43813 -34.90148 -33.03925 -32.39629 -30.97197 -30.56492 -26.71995 -25.54664 -24.39431 -22.68804 -22.49709 -21.88737 -21.15678 -19.55129 -17.43706 -17.09554 -16.46750 -15.90320 -15.34495 -14.99713 -14.78224 -14.61903 -14.28747 -13.61894 -13.54882 -13.42994 -13.11064 -12.81490 -12.64451 -12.30638 -11.97246 -11.65939 -11.56747 -11.33031 -11.13636 -11.03879 -11.03109 -10.83563 -10.75390 -10.60606 -10.39199 -10.16442 -9.50914 -9.02338 -8.97387 -8.84815 -8.26446 -8.15353 -6.48955 -6.19723 -3.89628 1.24383 1.33936 3.23138 3.24953 3.29409 3.44380 3.65137 3.79034 4.04410 4.25609 4.64182 4.73560 4.74636 4.88144 4.92554 4.98603 5.02287 5.12112 5.16064 5.29322 5.38400 5.39863 5.46337 5.52709 5.53725 5.65582 5.73320 5.79563 5.81236 5.92133 5.96358 5.99304 6.02603 6.15344 6.37172 6.38799 6.43567 6.52838 6.64879 6.79253 6.90844 7.03103 7.11912 7.62980 8.39313 9.26338 10.88444 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.014926 B = 0.003522 C = 0.003027 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1875.500985 B = 7948.750838 C = 9248.662992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.870 5.870 2 C 0.072 3.928 3 Si 0.917 3.083 4 H -0.274 1.274 5 H -0.283 1.283 6 H -0.274 1.274 7 C -0.517 4.517 8 H 0.071 0.929 9 S -0.131 6.131 10 C -0.112 4.112 11 C -0.092 4.092 12 C 0.058 3.942 13 N -0.500 5.500 14 C 0.089 3.911 15 C -0.076 4.076 16 C -0.113 4.113 17 C -0.120 4.120 18 C -0.122 4.122 19 C -0.122 4.122 20 C -0.097 4.097 21 C 0.024 3.976 22 C -0.223 4.223 23 C -0.171 4.171 24 H 0.267 0.733 25 H 0.057 0.943 26 H 0.059 0.941 27 H 0.073 0.927 28 H 0.064 0.936 29 H 0.034 0.966 30 H 0.078 0.922 31 H 0.084 0.916 32 H 0.045 0.955 33 H 0.118 0.882 34 H 0.120 0.880 35 H 0.119 0.881 36 H 0.120 0.880 37 H 0.121 0.879 38 H 0.124 0.876 39 H 0.097 0.903 40 H 0.093 0.907 41 H 0.097 0.903 42 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.839 -20.880 -2.111 22.772 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.506 5.506 2 C -0.137 4.137 3 Si 0.744 3.256 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.200 1.200 7 C -0.665 4.665 8 H 0.089 0.911 9 S 0.097 5.903 10 C -0.261 4.261 11 C -0.130 4.130 12 C -0.070 4.070 13 N -0.221 5.221 14 C -0.038 4.038 15 C -0.077 4.077 16 C -0.132 4.132 17 C -0.139 4.139 18 C -0.140 4.140 19 C -0.140 4.140 20 C -0.116 4.116 21 C -0.085 4.085 22 C -0.262 4.262 23 C -0.209 4.209 24 H 0.077 0.923 25 H 0.076 0.924 26 H 0.078 0.922 27 H 0.092 0.908 28 H 0.083 0.917 29 H 0.052 0.948 30 H 0.097 0.903 31 H 0.102 0.898 32 H 0.063 0.937 33 H 0.136 0.864 34 H 0.138 0.862 35 H 0.137 0.863 36 H 0.138 0.862 37 H 0.139 0.861 38 H 0.142 0.858 39 H 0.115 0.885 40 H 0.111 0.889 41 H 0.115 0.885 42 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 7.213 -20.972 -2.500 22.318 hybrid contribution 2.430 1.416 0.617 2.879 sum 9.643 -19.556 -1.883 21.885 Atomic orbital electron populations 1.70014 1.05910 1.27381 1.47264 1.25003 0.95057 0.99018 0.94640 0.86242 0.79260 0.81309 0.78831 1.19941 1.20813 1.19965 1.22658 0.94476 0.90884 1.58480 0.91075 1.84631 1.09551 0.99294 1.96836 1.23225 1.02820 0.97435 1.02628 1.21271 0.96872 0.91792 1.03099 1.22267 0.97332 0.86507 1.00918 1.61843 1.25979 1.02806 1.31479 1.21159 0.93070 0.97178 0.92356 1.19744 0.95304 0.97414 0.95231 1.21085 0.96837 0.98468 0.96787 1.21119 1.00168 0.99620 0.92945 1.21141 0.96188 0.97545 0.99126 1.21143 0.96962 0.99408 0.96518 1.20981 0.98862 0.99321 0.92387 1.22753 1.01412 0.93113 0.91247 1.23593 0.98484 1.05099 0.98990 1.23047 0.95248 1.00427 1.02149 0.92282 0.92418 0.92212 0.90807 0.91729 0.94769 0.90321 0.89753 0.93705 0.86356 0.86167 0.86293 0.86196 0.86121 0.85801 0.88514 0.88891 0.88487 0.88740 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.30 13.22 55.49 0.73 -25.57 16 2 C 0.07 2.06 5.49 -17.43 -0.10 1.97 16 3 Si 0.92 21.74 29.55 -169.99 -5.02 16.72 16 4 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 5 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 6 H -0.27 -6.36 7.11 56.52 0.40 -5.95 16 7 C -0.52 -15.05 9.50 30.94 0.29 -14.75 16 8 H 0.07 2.00 7.80 -52.49 -0.41 1.59 16 9 S -0.13 -3.50 21.44 -107.50 -2.30 -5.81 16 10 C -0.11 -2.32 5.67 37.16 0.21 -2.10 16 11 C -0.09 -1.56 5.20 -26.73 -0.14 -1.70 16 12 C 0.06 0.82 4.77 -3.82 -0.02 0.80 16 13 N -0.50 -6.24 4.67 -228.08 -1.06 -7.31 16 14 C 0.09 0.95 3.76 -4.97 -0.02 0.93 16 15 C -0.08 -0.86 4.85 -104.62 -0.51 -1.37 16 16 C -0.11 -1.25 8.23 -39.58 -0.33 -1.58 16 17 C -0.12 -1.26 10.05 -39.59 -0.40 -1.66 16 18 C -0.12 -1.22 10.05 -39.59 -0.40 -1.62 16 19 C -0.12 -1.24 10.05 -39.58 -0.40 -1.64 16 20 C -0.10 -1.05 9.73 -39.58 -0.38 -1.43 16 21 C 0.02 0.28 5.78 -67.71 -0.39 -0.11 16 22 C -0.22 -2.11 9.51 -26.69 -0.25 -2.37 16 23 C -0.17 -1.68 10.01 -26.69 -0.27 -1.95 16 24 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 25 H 0.06 1.18 8.14 -51.92 -0.42 0.75 16 26 H 0.06 1.24 8.14 -51.91 -0.42 0.82 16 27 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 28 H 0.06 1.09 6.45 -51.93 -0.33 0.76 16 29 H 0.03 0.47 8.12 -51.93 -0.42 0.05 16 30 H 0.08 1.13 6.06 -51.93 -0.31 0.82 16 31 H 0.08 0.81 5.97 -51.93 -0.31 0.50 16 32 H 0.04 0.46 7.84 -51.93 -0.41 0.05 16 33 H 0.12 1.20 8.06 -52.49 -0.42 0.78 16 34 H 0.12 1.05 8.06 -52.49 -0.42 0.63 16 35 H 0.12 0.95 8.06 -52.49 -0.42 0.53 16 36 H 0.12 0.97 8.06 -52.49 -0.42 0.54 16 37 H 0.12 1.17 8.06 -52.48 -0.42 0.74 16 38 H 0.12 1.55 6.38 -51.93 -0.33 1.22 16 39 H 0.10 0.86 5.88 -51.93 -0.31 0.55 16 40 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 41 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 42 H 0.09 0.91 7.86 -51.93 -0.41 0.50 16 LS Contribution 354.51 15.07 5.34 5.34 Total: -1.00 -31.45 354.51 -12.01 -43.47 By element: Atomic # 1 Polarization: 8.34 SS G_CDS: -6.60 Total: 1.74 kcal Atomic # 6 Polarization: -25.49 SS G_CDS: -3.09 Total: -28.59 kcal Atomic # 7 Polarization: -32.54 SS G_CDS: -0.33 Total: -32.87 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.72 kcal Atomic # 16 Polarization: -3.50 SS G_CDS: -2.30 Total: -5.81 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -31.45 -12.01 -43.47 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000074980941.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.886 kcal (2) G-P(sol) polarization free energy of solvation -31.453 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.433 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.013 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.465 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.420 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds