Wall clock time and date at job start Tue Mar 31 2020 06:58:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31631 * 1 3 3 Si 1.86805 * 120.00265 * 2 1 4 4 H 1.48498 * 109.47148 * 239.99776 * 3 2 1 5 5 H 1.48502 * 109.46647 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47018 * 119.99186 * 3 2 1 7 7 C 1.38802 * 120.00348 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00337 * 180.02562 * 7 2 1 9 9 S 1.76208 * 119.99323 * 0.02562 * 7 2 1 10 10 C 1.81004 * 99.99553 * 179.97438 * 9 7 2 11 11 C 1.52995 * 109.46784 * 180.02562 * 10 9 7 12 12 C 1.53006 * 109.47001 * 179.97438 * 11 10 9 13 13 N 1.46897 * 109.47009 * 179.97438 * 12 11 10 14 14 C 1.46901 * 110.99994 * 170.00187 * 13 12 11 15 15 C 1.50707 * 109.47121 * 290.24166 * 14 13 12 16 16 C 1.38242 * 119.99739 * 95.85258 * 15 14 13 17 17 C 1.38233 * 119.99599 * 180.02562 * 16 15 14 18 18 C 1.38232 * 120.00385 * 359.95444 * 17 16 15 19 19 C 1.38230 * 119.99910 * 0.28253 * 18 17 16 20 20 C 1.38228 * 120.00283 * 275.87503 * 15 14 13 21 21 C 1.46899 * 111.00331 * 293.95575 * 13 12 11 22 22 C 1.53002 * 117.49774 * 239.64383 * 21 13 12 23 23 C 1.53006 * 117.49850 * 170.98593 * 21 13 12 24 24 H 0.96994 * 119.99698 * 0.02562 * 1 2 3 25 25 H 1.08995 * 109.47594 * 59.99994 * 10 9 7 26 26 H 1.09003 * 109.47179 * 299.99918 * 10 9 7 27 27 H 1.08997 * 109.47740 * 60.00107 * 11 10 9 28 28 H 1.08999 * 109.47709 * 299.99502 * 11 10 9 29 29 H 1.08999 * 109.46810 * 60.00380 * 12 11 10 30 30 H 1.08994 * 109.47477 * 300.00074 * 12 11 10 31 31 H 1.08995 * 109.47345 * 170.24485 * 14 13 12 32 32 H 1.08997 * 109.47021 * 50.24026 * 14 13 12 33 33 H 1.08002 * 119.99945 * 359.97438 * 16 15 14 34 34 H 1.08002 * 119.99537 * 179.97438 * 17 16 15 35 35 H 1.07998 * 120.00086 * 179.97438 * 18 17 16 36 36 H 1.07996 * 120.00365 * 179.72380 * 19 18 17 37 37 H 1.08006 * 119.99729 * 0.02562 * 20 15 14 38 38 H 1.08990 * 115.55107 * 25.31502 * 21 13 12 39 39 H 1.09000 * 117.50040 * 0.02562 * 22 21 13 40 40 H 1.09001 * 117.49887 * 145.02443 * 22 21 13 41 41 H 1.09002 * 117.49811 * 214.98132 * 23 21 13 42 42 H 1.09000 * 117.49509 * 359.97236 * 23 21 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6177 0.0000 4 1 3.1042 1.6963 -1.2125 5 1 1.2854 2.7464 -0.0006 6 1 3.1040 1.6964 1.2126 7 6 2.0104 -1.2020 0.0005 8 1 3.0904 -1.2020 0.0010 9 16 1.1293 -2.7280 0.0005 10 6 2.5159 -3.8914 0.0005 11 6 1.9793 -5.3242 -0.0001 12 6 3.1514 -6.3077 -0.0008 13 7 2.6362 -7.6834 -0.0008 14 6 3.7163 -8.6500 -0.2395 15 6 4.1918 -8.5303 -1.6645 16 6 5.2937 -7.7505 -1.9622 17 6 5.7295 -7.6402 -3.2694 18 6 5.0640 -8.3104 -4.2788 19 6 3.9592 -9.0862 -3.9817 20 6 3.5258 -9.1997 -2.6740 21 6 1.9306 -7.9814 1.2528 22 6 2.4625 -9.1347 2.1059 23 6 1.1529 -9.2967 1.3302 24 1 -0.4849 0.8400 -0.0004 25 1 3.1245 -3.7314 0.8905 26 1 3.1245 -3.7313 -0.8895 27 1 1.3709 -5.4840 -0.8903 28 1 1.3705 -5.4847 0.8896 29 1 3.7600 -6.1481 0.8893 30 1 3.7599 -6.1473 -0.8907 31 1 3.3455 -9.6598 -0.0639 32 1 4.5446 -8.4440 0.4384 33 1 5.8136 -7.2268 -1.1736 34 1 6.5902 -7.0306 -3.5021 35 1 5.4043 -8.2239 -5.3001 36 1 3.4365 -9.6062 -4.7709 37 1 2.6643 -9.8083 -2.4414 38 1 1.5149 -7.1195 1.7746 39 1 3.3363 -9.6721 1.7373 40 1 2.3964 -9.0317 3.1890 41 1 0.2257 -9.3002 1.9033 42 1 1.1644 -9.9407 0.4508 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000074980941.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:58:39 Heat of formation + Delta-G solvation = 29.202739 kcal Electronic energy + Delta-G solvation = -20198.163421 eV Core-core repulsion = 17269.026658 eV Total energy + Delta-G solvation = -2929.136764 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 291.135 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.71814 -39.27077 -35.99029 -34.61214 -34.09710 -31.74963 -31.57428 -28.05542 -27.46742 -25.51514 -23.54619 -23.25669 -22.95668 -22.18857 -20.51960 -19.54927 -17.95728 -17.28899 -16.94627 -16.89601 -16.21112 -16.09681 -15.93155 -15.67332 -14.91930 -14.65102 -14.36801 -14.22396 -13.87490 -13.70735 -13.50061 -13.25128 -13.08280 -12.89826 -12.87157 -12.50051 -12.38712 -12.29089 -12.07093 -11.80926 -11.79019 -11.41658 -11.36271 -11.18088 -11.12393 -10.32682 -9.76622 -9.65241 -9.07373 -8.67043 -8.37144 -6.13838 0.44866 0.54838 1.30863 1.40670 1.47386 1.73521 2.28223 2.62853 2.96927 2.98629 3.15843 3.32493 3.79832 3.90576 3.94243 3.96472 4.09086 4.16622 4.19459 4.26699 4.32887 4.34034 4.38156 4.53481 4.58582 4.65789 4.73089 4.77871 4.79785 4.81315 4.97654 5.06603 5.16088 5.19245 5.19887 5.27905 5.28998 5.39034 5.59762 5.66235 5.72197 6.06853 6.11240 6.17744 6.17991 7.04676 8.72167 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.014926 B = 0.003522 C = 0.003027 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1875.500985 B = 7948.750838 C = 9248.662992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.908 5.908 2 C 0.016 3.984 3 Si 0.993 3.007 4 H -0.265 1.265 5 H -0.274 1.274 6 H -0.264 1.264 7 C -0.540 4.540 8 H 0.072 0.928 9 S -0.196 6.196 10 C -0.086 4.086 11 C -0.078 4.078 12 C 0.072 3.928 13 N -0.507 5.507 14 C 0.094 3.906 15 C -0.089 4.089 16 C -0.127 4.127 17 C -0.132 4.132 18 C -0.130 4.130 19 C -0.130 4.130 20 C -0.109 4.109 21 C -0.001 4.001 22 C -0.206 4.206 23 C -0.164 4.164 24 H 0.272 0.728 25 H 0.062 0.938 26 H 0.059 0.941 27 H 0.060 0.940 28 H 0.064 0.936 29 H 0.039 0.961 30 H 0.076 0.924 31 H 0.097 0.903 32 H 0.050 0.950 33 H 0.123 0.877 34 H 0.134 0.866 35 H 0.138 0.862 36 H 0.139 0.861 37 H 0.129 0.871 38 H 0.110 0.890 39 H 0.106 0.894 40 H 0.100 0.900 41 H 0.103 0.897 42 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.224 -21.563 -2.168 23.962 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.189 4.189 3 Si 0.815 3.185 4 H -0.189 1.189 5 H -0.199 1.199 6 H -0.189 1.189 7 C -0.688 4.688 8 H 0.090 0.910 9 S 0.032 5.968 10 C -0.235 4.235 11 C -0.117 4.117 12 C -0.057 4.057 13 N -0.228 5.228 14 C -0.032 4.032 15 C -0.090 4.090 16 C -0.146 4.146 17 C -0.150 4.150 18 C -0.148 4.148 19 C -0.148 4.148 20 C -0.128 4.128 21 C -0.110 4.110 22 C -0.245 4.245 23 C -0.202 4.202 24 H 0.081 0.919 25 H 0.080 0.920 26 H 0.078 0.922 27 H 0.078 0.922 28 H 0.082 0.918 29 H 0.058 0.942 30 H 0.095 0.905 31 H 0.115 0.885 32 H 0.068 0.932 33 H 0.141 0.859 34 H 0.152 0.848 35 H 0.156 0.844 36 H 0.157 0.843 37 H 0.147 0.853 38 H 0.128 0.872 39 H 0.125 0.875 40 H 0.119 0.881 41 H 0.122 0.878 42 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 8.598 -21.676 -2.554 23.459 hybrid contribution 1.993 1.525 0.617 2.584 sum 10.591 -20.152 -1.936 22.847 Atomic orbital electron populations 1.70151 1.07713 1.28626 1.47907 1.26067 0.96018 1.03083 0.93683 0.85077 0.77966 0.76066 0.79377 1.18935 1.19881 1.18854 1.23016 0.94727 0.92030 1.59040 0.90963 1.84650 1.13978 1.01096 1.97028 1.23131 1.00138 0.97546 1.02705 1.21130 0.97867 0.90316 1.02411 1.22002 0.95626 0.87048 1.01051 1.61795 1.26682 1.02084 1.32272 1.21169 0.92652 0.97169 0.92232 1.19881 0.95627 0.97841 0.95633 1.21259 0.97159 0.98803 0.97342 1.21395 1.00764 0.99900 0.92953 1.21454 0.96079 0.97155 1.00081 1.21446 0.97093 0.99393 0.96868 1.21194 0.99241 0.99592 0.92759 1.22748 1.03032 0.93587 0.91634 1.23624 0.98575 1.03104 0.99199 1.23106 0.95811 0.98878 1.02411 0.91937 0.91962 0.92239 0.92158 0.91767 0.94238 0.90545 0.88473 0.93220 0.85923 0.84809 0.84388 0.84349 0.85335 0.87240 0.87545 0.88132 0.87832 0.88328 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -55.55 13.22 21.65 0.29 -55.26 16 2 C 0.02 0.95 5.49 84.86 0.47 1.42 16 3 Si 0.99 44.34 29.55 68.60 2.03 46.37 16 4 H -0.26 -11.33 7.11 99.48 0.71 -10.62 16 5 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 6 H -0.26 -11.25 7.11 99.48 0.71 -10.55 16 7 C -0.54 -31.81 9.50 67.95 0.65 -31.17 16 8 H 0.07 4.08 7.80 -2.91 -0.02 4.06 16 9 S -0.20 -10.73 21.44 -56.49 -1.21 -11.94 16 10 C -0.09 -3.57 5.67 71.98 0.41 -3.16 16 11 C -0.08 -2.68 5.20 30.59 0.16 -2.52 16 12 C 0.07 1.97 4.77 86.31 0.41 2.38 16 13 N -0.51 -12.11 4.67 -875.52 -4.09 -16.20 16 14 C 0.09 1.86 3.76 85.56 0.32 2.18 16 15 C -0.09 -1.91 4.85 -19.86 -0.10 -2.00 16 16 C -0.13 -2.69 8.23 22.27 0.18 -2.51 16 17 C -0.13 -2.62 10.05 22.27 0.22 -2.40 16 18 C -0.13 -2.42 10.05 22.27 0.22 -2.19 16 19 C -0.13 -2.45 10.05 22.27 0.22 -2.23 16 20 C -0.11 -2.23 9.73 22.27 0.22 -2.02 16 21 C 0.00 -0.02 5.78 44.92 0.26 0.24 16 22 C -0.21 -3.48 9.51 30.62 0.29 -3.19 16 23 C -0.16 -2.95 10.01 30.62 0.31 -2.64 16 24 H 0.27 15.43 8.31 -92.71 -0.77 14.66 16 25 H 0.06 2.53 8.14 -2.40 -0.02 2.51 16 26 H 0.06 2.47 8.14 -2.39 -0.02 2.45 16 27 H 0.06 2.22 8.14 -2.39 -0.02 2.20 16 28 H 0.06 2.20 6.45 -2.39 -0.02 2.18 16 29 H 0.04 1.04 8.12 -2.39 -0.02 1.02 16 30 H 0.08 2.14 6.06 -2.39 -0.01 2.13 16 31 H 0.10 1.65 5.97 -2.39 -0.01 1.64 16 32 H 0.05 0.93 7.84 -2.39 -0.02 0.91 16 33 H 0.12 2.38 8.06 -2.91 -0.02 2.36 16 34 H 0.13 2.16 8.06 -2.91 -0.02 2.14 16 35 H 0.14 1.94 8.06 -2.91 -0.02 1.92 16 36 H 0.14 1.98 8.06 -2.91 -0.02 1.96 16 37 H 0.13 2.31 8.06 -2.91 -0.02 2.29 16 38 H 0.11 2.71 6.38 -2.39 -0.02 2.70 16 39 H 0.11 1.60 5.88 -2.39 -0.01 1.59 16 40 H 0.10 1.56 8.14 -2.39 -0.02 1.54 16 41 H 0.10 1.71 8.14 -2.39 -0.02 1.69 16 42 H 0.10 1.70 7.86 -2.39 -0.02 1.68 16 Total: -1.00 -67.67 354.51 2.24 -65.43 By element: Atomic # 1 Polarization: 20.43 SS G_CDS: 0.98 Total: 21.41 kcal Atomic # 6 Polarization: -54.05 SS G_CDS: 4.24 Total: -49.81 kcal Atomic # 7 Polarization: -67.66 SS G_CDS: -3.80 Total: -71.46 kcal Atomic # 14 Polarization: 44.34 SS G_CDS: 2.03 Total: 46.37 kcal Atomic # 16 Polarization: -10.73 SS G_CDS: -1.21 Total: -11.94 kcal Total: -67.67 2.24 -65.43 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000074980941.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.632 kcal (2) G-P(sol) polarization free energy of solvation -67.673 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.959 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.243 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.429 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.203 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds