Wall clock time and date at job start Tue Mar 31 2020 07:08:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38317 * 120.02461 * 2 1 4 4 C 1.38048 * 119.88667 * 179.89390 * 3 2 1 5 5 C 1.38618 * 120.49135 * 0.04364 * 4 3 2 6 6 C 1.38374 * 119.86016 * 0.16840 * 5 4 3 7 7 C 1.37812 * 120.02445 * 180.02562 * 2 1 3 8 8 N 1.39408 * 122.96392 * 179.60383 * 6 5 4 9 9 C 1.46901 * 111.00217 * 145.50226 * 8 6 5 10 10 C 1.52998 * 109.46883 * 301.10485 * 9 8 6 11 11 C 1.52997 * 109.47186 * 179.97438 * 10 9 8 12 12 S 1.81004 * 109.47365 * 179.97438 * 11 10 9 13 13 C 1.76199 * 99.99962 * 180.02562 * 12 11 10 14 14 H 1.08001 * 120.00025 * 359.97438 * 13 12 11 15 15 C 1.38800 * 119.99727 * 179.97438 * 13 12 11 16 16 N 1.31630 * 119.99674 * 179.97438 * 15 13 12 17 17 Si 1.86800 * 120.00074 * 0.02562 * 15 13 12 18 18 H 1.48498 * 109.47364 * 89.99917 * 17 15 13 19 19 H 1.48502 * 109.46799 * 209.99506 * 17 15 13 20 20 H 1.48495 * 109.47016 * 329.99298 * 17 15 13 21 21 C 1.46431 * 113.13989 * 19.94409 * 8 6 5 22 22 C 1.53382 * 108.65276 * 306.70289 * 21 8 6 23 23 C 1.50799 * 118.12729 * 180.22900 * 5 4 3 24 24 H 1.09001 * 109.47276 * 269.98362 * 1 2 3 25 25 H 1.09000 * 109.46726 * 29.98371 * 1 2 3 26 26 H 1.08997 * 109.47254 * 149.98180 * 1 2 3 27 27 H 1.07991 * 120.05403 * 359.86662 * 3 2 1 28 28 H 1.08002 * 119.75902 * 180.02562 * 4 3 2 29 29 H 1.08000 * 119.78544 * 359.97438 * 7 2 1 30 30 H 1.08996 * 109.47271 * 181.10642 * 9 8 6 31 31 H 1.08998 * 109.46745 * 61.09960 * 9 8 6 32 32 H 1.09007 * 109.47054 * 299.99449 * 10 9 8 33 33 H 1.08995 * 109.47287 * 59.99525 * 10 9 8 34 34 H 1.08995 * 109.47359 * 299.99841 * 11 10 9 35 35 H 1.09005 * 109.47318 * 59.99578 * 11 10 9 36 36 H 0.97007 * 119.99804 * 179.97438 * 16 15 13 37 37 H 1.09002 * 109.60064 * 66.45077 * 21 8 6 38 38 H 1.08993 * 109.60786 * 186.78072 * 21 8 6 39 39 H 1.09003 * 109.76385 * 187.87905 * 22 21 8 40 40 H 1.08996 * 109.77285 * 308.61321 * 22 21 8 41 41 H 1.09006 * 109.44258 * 75.38040 * 23 5 4 42 42 H 1.09002 * 109.43763 * 315.50000 * 23 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1991 1.1976 0.0000 4 6 3.5795 1.1942 0.0022 5 6 4.2800 -0.0019 0.0035 6 6 3.5926 -1.2029 -0.0009 7 6 2.1965 -1.1932 -0.0005 8 7 4.2310 -2.4422 -0.0080 9 6 3.4687 -3.4315 0.7655 10 6 3.3139 -2.9424 2.2069 11 6 2.5194 -3.9724 3.0124 12 16 2.3369 -3.3943 4.7179 13 6 1.4129 -4.7319 5.3972 14 1 1.1386 -5.5702 4.7739 15 6 1.0375 -4.7082 6.7332 16 7 0.3467 -5.7073 7.2405 17 14 1.5113 -3.2579 7.8109 18 1 0.4446 -2.2265 7.7501 19 1 1.6767 -3.7167 9.2136 20 1 2.7893 -2.6776 7.3260 21 6 5.6206 -2.3764 0.4491 22 6 6.3571 -1.3108 -0.3722 23 6 5.7869 0.0566 0.0113 24 1 -0.3634 -0.0003 1.0277 25 1 -0.3633 0.8902 -0.5136 26 1 -0.3633 -0.8898 -0.5141 27 1 1.6604 2.1335 -0.0022 28 1 4.1179 2.1305 0.0026 29 1 1.6534 -2.1267 -0.0005 30 1 3.9987 -4.3838 0.7599 31 1 2.4832 -3.5613 0.3181 32 1 4.2994 -2.8125 2.6543 33 1 2.7839 -1.9900 2.2126 34 1 1.5340 -4.1020 2.5649 35 1 3.0490 -4.9251 3.0068 36 1 0.0847 -5.6909 8.1744 37 1 5.6458 -2.1067 1.5049 38 1 6.0984 -3.3457 0.3077 39 1 7.4229 -1.3425 -0.1458 40 1 6.2006 -1.4914 -1.4356 41 1 6.1343 0.3281 1.0082 42 1 6.1245 0.8047 -0.7061 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000074990643.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:08:16 Heat of formation + Delta-G solvation = 6.800843 kcal Electronic energy + Delta-G solvation = -20916.164016 eV Core-core repulsion = 17986.055833 eV Total energy + Delta-G solvation = -2930.108183 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 291.135 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.80819 -37.39762 -35.29562 -32.45787 -32.33465 -31.78219 -29.78719 -27.32967 -26.24697 -25.61407 -24.10061 -22.52677 -22.27087 -20.95678 -19.10924 -17.50247 -16.72324 -16.24783 -15.74570 -15.09673 -14.96253 -14.78759 -14.24813 -13.99353 -13.83076 -13.73350 -13.48973 -13.20180 -12.92661 -12.82819 -12.34035 -12.11738 -12.03997 -11.89509 -11.64414 -11.43045 -11.16749 -11.11227 -11.05351 -10.90402 -10.64270 -10.51063 -10.24855 -9.87993 -9.56624 -9.01637 -8.58450 -8.49215 -7.57875 -6.95735 -6.29563 -4.01811 1.40728 1.47701 2.99739 3.28962 3.44240 3.52568 3.60443 3.92540 4.30486 4.53902 4.68809 4.77142 4.78613 4.90155 4.95711 5.07823 5.09839 5.21957 5.25716 5.34047 5.38495 5.42988 5.47355 5.50252 5.58953 5.65876 5.71834 5.72977 5.74244 5.83774 5.92459 5.98012 6.03195 6.12068 6.19689 6.27476 6.37623 6.50074 6.58568 6.68382 6.83123 7.05616 7.35881 7.94288 8.43007 9.16559 10.79972 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.017423 B = 0.004181 C = 0.003848 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1606.648292 B = 6695.513886 C = 7274.407238 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.061 4.061 3 C -0.153 4.153 4 C -0.091 4.091 5 C -0.136 4.136 6 C 0.140 3.860 7 C -0.156 4.156 8 N -0.492 5.492 9 C 0.057 3.943 10 C -0.136 4.136 11 C -0.077 4.077 12 S -0.216 6.216 13 C -0.502 4.502 14 H 0.088 0.912 15 C 0.093 3.907 16 N -0.882 5.882 17 Si 0.861 3.139 18 H -0.268 1.268 19 H -0.275 1.275 20 H -0.239 1.239 21 C 0.051 3.949 22 C -0.121 4.121 23 C -0.076 4.076 24 H 0.074 0.926 25 H 0.064 0.936 26 H 0.065 0.935 27 H 0.117 0.883 28 H 0.118 0.882 29 H 0.126 0.874 30 H 0.084 0.916 31 H 0.085 0.915 32 H 0.067 0.933 33 H 0.074 0.926 34 H 0.067 0.933 35 H 0.067 0.933 36 H 0.270 0.730 37 H 0.053 0.947 38 H 0.084 0.916 39 H 0.075 0.925 40 H 0.073 0.927 41 H 0.072 0.928 42 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.578 12.004 -17.091 22.578 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.061 4.061 3 C -0.172 4.172 4 C -0.110 4.110 5 C -0.139 4.139 6 C 0.041 3.959 7 C -0.176 4.176 8 N -0.204 5.204 9 C -0.070 4.070 10 C -0.176 4.176 11 C -0.226 4.226 12 S 0.011 5.989 13 C -0.650 4.650 14 H 0.106 0.894 15 C -0.115 4.115 16 N -0.519 5.519 17 Si 0.686 3.314 18 H -0.194 1.194 19 H -0.201 1.201 20 H -0.163 1.163 21 C -0.075 4.075 22 C -0.159 4.159 23 C -0.113 4.113 24 H 0.092 0.908 25 H 0.083 0.917 26 H 0.084 0.916 27 H 0.135 0.865 28 H 0.136 0.864 29 H 0.144 0.856 30 H 0.102 0.898 31 H 0.103 0.897 32 H 0.085 0.915 33 H 0.093 0.907 34 H 0.086 0.914 35 H 0.086 0.914 36 H 0.080 0.920 37 H 0.071 0.929 38 H 0.102 0.898 39 H 0.093 0.907 40 H 0.092 0.908 41 H 0.090 0.910 42 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 8.929 12.611 -16.896 22.896 hybrid contribution -0.487 -0.460 0.844 1.078 sum 8.442 12.150 -16.051 21.830 Atomic orbital electron populations 1.20803 0.91257 1.02445 1.02700 1.19686 0.95910 0.92812 0.97731 1.20810 0.94020 0.97334 1.05061 1.20857 0.94083 0.96801 0.99240 1.19443 0.95351 0.91956 1.07142 1.18503 0.92303 0.88542 0.96537 1.21032 0.92395 0.98310 1.05889 1.58398 1.03352 1.06511 1.52163 1.22427 0.98914 0.94366 0.91328 1.22002 1.01110 0.99869 0.94589 1.22943 1.01776 1.00321 0.97601 1.84205 1.73900 1.34511 1.06234 1.22123 1.38642 1.05295 0.98891 0.89412 1.24781 0.93636 0.96129 0.97004 1.69939 1.36429 1.30839 1.14656 0.86686 0.81462 0.82903 0.80394 1.19359 1.20076 1.16257 1.22205 0.86826 1.00267 0.98181 1.21698 0.99290 0.94015 1.00858 1.20483 0.91202 0.97767 1.01856 0.90772 0.91748 0.91606 0.86484 0.86442 0.85577 0.89806 0.89678 0.91454 0.90691 0.91378 0.91394 0.91976 0.92861 0.89791 0.90679 0.90790 0.90966 0.90876 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.21 10.01 36.00 0.36 -0.85 16 2 C -0.06 -0.77 5.87 -104.75 -0.61 -1.38 16 3 C -0.15 -1.81 9.71 -39.62 -0.38 -2.20 16 4 C -0.09 -1.06 9.63 -39.51 -0.38 -1.44 16 5 C -0.14 -1.68 5.74 -104.38 -0.60 -2.28 16 6 C 0.14 1.87 4.86 -83.85 -0.41 1.47 16 7 C -0.16 -2.10 7.38 -39.22 -0.29 -2.39 16 8 N -0.49 -6.18 4.72 -171.29 -0.81 -6.99 16 9 C 0.06 0.73 4.84 -3.82 -0.02 0.71 16 10 C -0.14 -2.13 4.61 -26.73 -0.12 -2.26 16 11 C -0.08 -1.49 5.67 37.16 0.21 -1.28 16 12 S -0.22 -5.32 19.41 -107.50 -2.09 -7.41 16 13 C -0.50 -14.62 10.04 30.94 0.31 -14.31 16 14 H 0.09 2.71 8.03 -52.49 -0.42 2.29 16 15 C 0.09 2.72 5.50 -17.43 -0.10 2.63 16 16 N -0.88 -26.83 13.97 55.49 0.78 -26.05 16 17 Si 0.86 21.72 27.74 -169.99 -4.72 17.01 16 18 H -0.27 -6.70 7.11 56.52 0.40 -6.30 16 19 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 20 H -0.24 -5.92 6.74 56.52 0.38 -5.54 16 21 C 0.05 0.56 5.26 -3.88 -0.02 0.54 16 22 C -0.12 -1.12 6.19 -26.51 -0.16 -1.28 16 23 C -0.08 -0.75 5.81 -27.81 -0.16 -0.91 16 24 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 25 H 0.06 0.57 8.09 -51.93 -0.42 0.15 16 26 H 0.06 0.65 8.08 -51.93 -0.42 0.23 16 27 H 0.12 1.15 8.06 -52.49 -0.42 0.72 16 28 H 0.12 1.10 8.06 -52.49 -0.42 0.67 16 29 H 0.13 1.65 5.92 -52.49 -0.31 1.34 16 30 H 0.08 1.00 8.10 -51.93 -0.42 0.58 16 31 H 0.08 1.07 6.14 -51.93 -0.32 0.75 16 32 H 0.07 1.08 6.59 -51.92 -0.34 0.73 16 33 H 0.07 1.27 6.23 -51.93 -0.32 0.95 16 34 H 0.07 1.31 8.14 -51.92 -0.42 0.89 16 35 H 0.07 1.30 8.14 -51.91 -0.42 0.87 16 36 H 0.27 7.63 8.31 -40.82 -0.34 7.29 16 37 H 0.05 0.64 6.46 -51.93 -0.34 0.30 16 38 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 39 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 40 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 41 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 42 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 LS Contribution 341.12 15.07 5.14 5.14 Total: -1.00 -31.50 341.12 -10.77 -42.27 By element: Atomic # 1 Polarization: 7.97 SS G_CDS: -6.70 Total: 1.27 kcal Atomic # 6 Polarization: -22.86 SS G_CDS: -2.38 Total: -25.24 kcal Atomic # 7 Polarization: -33.01 SS G_CDS: -0.03 Total: -33.04 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -4.72 Total: 17.01 kcal Atomic # 16 Polarization: -5.32 SS G_CDS: -2.09 Total: -7.41 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -31.50 -10.77 -42.27 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000074990643.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.066 kcal (2) G-P(sol) polarization free energy of solvation -31.496 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.570 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.769 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.266 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.801 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds