Wall clock time and date at job start Tue Mar 31 2020 07:08:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38317 * 120.02461 * 2 1 4 4 C 1.38048 * 119.88667 * 179.89390 * 3 2 1 5 5 C 1.38618 * 120.49135 * 0.04364 * 4 3 2 6 6 C 1.38374 * 119.86016 * 0.16840 * 5 4 3 7 7 C 1.37812 * 120.02445 * 180.02562 * 2 1 3 8 8 N 1.39408 * 122.96392 * 179.60383 * 6 5 4 9 9 C 1.46901 * 111.00217 * 145.50226 * 8 6 5 10 10 C 1.52998 * 109.46883 * 301.10485 * 9 8 6 11 11 C 1.52997 * 109.47186 * 179.97438 * 10 9 8 12 12 S 1.81004 * 109.47365 * 179.97438 * 11 10 9 13 13 C 1.76199 * 99.99962 * 180.02562 * 12 11 10 14 14 H 1.08001 * 120.00025 * 359.97438 * 13 12 11 15 15 C 1.38800 * 119.99727 * 179.97438 * 13 12 11 16 16 N 1.31630 * 119.99674 * 179.97438 * 15 13 12 17 17 Si 1.86800 * 120.00074 * 0.02562 * 15 13 12 18 18 H 1.48498 * 109.47364 * 89.99917 * 17 15 13 19 19 H 1.48502 * 109.46799 * 209.99506 * 17 15 13 20 20 H 1.48495 * 109.47016 * 329.99298 * 17 15 13 21 21 C 1.46431 * 113.13989 * 19.94409 * 8 6 5 22 22 C 1.53382 * 108.65276 * 306.70289 * 21 8 6 23 23 C 1.50799 * 118.12729 * 180.22900 * 5 4 3 24 24 H 1.09001 * 109.47276 * 269.98362 * 1 2 3 25 25 H 1.09000 * 109.46726 * 29.98371 * 1 2 3 26 26 H 1.08997 * 109.47254 * 149.98180 * 1 2 3 27 27 H 1.07991 * 120.05403 * 359.86662 * 3 2 1 28 28 H 1.08002 * 119.75902 * 180.02562 * 4 3 2 29 29 H 1.08000 * 119.78544 * 359.97438 * 7 2 1 30 30 H 1.08996 * 109.47271 * 181.10642 * 9 8 6 31 31 H 1.08998 * 109.46745 * 61.09960 * 9 8 6 32 32 H 1.09007 * 109.47054 * 299.99449 * 10 9 8 33 33 H 1.08995 * 109.47287 * 59.99525 * 10 9 8 34 34 H 1.08995 * 109.47359 * 299.99841 * 11 10 9 35 35 H 1.09005 * 109.47318 * 59.99578 * 11 10 9 36 36 H 0.97007 * 119.99804 * 179.97438 * 16 15 13 37 37 H 1.09002 * 109.60064 * 66.45077 * 21 8 6 38 38 H 1.08993 * 109.60786 * 186.78072 * 21 8 6 39 39 H 1.09003 * 109.76385 * 187.87905 * 22 21 8 40 40 H 1.08996 * 109.77285 * 308.61321 * 22 21 8 41 41 H 1.09006 * 109.44258 * 75.38040 * 23 5 4 42 42 H 1.09002 * 109.43763 * 315.50000 * 23 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1991 1.1976 0.0000 4 6 3.5795 1.1942 0.0022 5 6 4.2800 -0.0019 0.0035 6 6 3.5926 -1.2029 -0.0009 7 6 2.1965 -1.1932 -0.0005 8 7 4.2310 -2.4422 -0.0080 9 6 3.4687 -3.4315 0.7655 10 6 3.3139 -2.9424 2.2069 11 6 2.5194 -3.9724 3.0124 12 16 2.3369 -3.3943 4.7179 13 6 1.4129 -4.7319 5.3972 14 1 1.1386 -5.5702 4.7739 15 6 1.0375 -4.7082 6.7332 16 7 0.3467 -5.7073 7.2405 17 14 1.5113 -3.2579 7.8109 18 1 0.4446 -2.2265 7.7501 19 1 1.6767 -3.7167 9.2136 20 1 2.7893 -2.6776 7.3260 21 6 5.6206 -2.3764 0.4491 22 6 6.3571 -1.3108 -0.3722 23 6 5.7869 0.0566 0.0113 24 1 -0.3634 -0.0003 1.0277 25 1 -0.3633 0.8902 -0.5136 26 1 -0.3633 -0.8898 -0.5141 27 1 1.6604 2.1335 -0.0022 28 1 4.1179 2.1305 0.0026 29 1 1.6534 -2.1267 -0.0005 30 1 3.9987 -4.3838 0.7599 31 1 2.4832 -3.5613 0.3181 32 1 4.2994 -2.8125 2.6543 33 1 2.7839 -1.9900 2.2126 34 1 1.5340 -4.1020 2.5649 35 1 3.0490 -4.9251 3.0068 36 1 0.0847 -5.6909 8.1744 37 1 5.6458 -2.1067 1.5049 38 1 6.0984 -3.3457 0.3077 39 1 7.4229 -1.3425 -0.1458 40 1 6.2006 -1.4914 -1.4356 41 1 6.1343 0.3281 1.0082 42 1 6.1245 0.8047 -0.7061 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000074990643.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:08:16 Heat of formation + Delta-G solvation = -10.023377 kcal Electronic energy + Delta-G solvation = -20916.893569 eV Core-core repulsion = 17986.055833 eV Total energy + Delta-G solvation = -2930.837736 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 291.135 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.72560 -38.33016 -36.24345 -34.70828 -33.53352 -32.65621 -30.70687 -28.26854 -27.98371 -27.17731 -25.06278 -23.60756 -23.20900 -22.01066 -20.01811 -19.62497 -17.70142 -17.21055 -17.11752 -16.67036 -16.25552 -16.09042 -15.53278 -15.05642 -14.96056 -14.76928 -14.69378 -14.35384 -14.14436 -13.94150 -13.52039 -13.42788 -13.15604 -13.07525 -12.93042 -12.88821 -12.70421 -12.33341 -12.21737 -12.00850 -11.88332 -11.71802 -11.57450 -11.31003 -11.19179 -10.69012 -10.53867 -9.41416 -9.02567 -8.54406 -8.53459 -6.25700 0.48741 0.53798 1.09632 1.28935 1.44443 1.71560 2.22041 2.62579 2.66783 2.83984 2.99945 3.69510 3.78807 3.89370 3.98070 4.03428 4.09749 4.15235 4.24898 4.33163 4.39765 4.46125 4.51708 4.59637 4.66244 4.71692 4.75869 4.82270 4.82891 4.93541 4.96339 5.02625 5.06404 5.10933 5.19076 5.27264 5.30005 5.40007 5.60543 5.67783 5.76879 5.92508 6.07953 6.12410 6.42762 6.90188 8.58973 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.017423 B = 0.004181 C = 0.003848 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1606.648292 B = 6695.513886 C = 7274.407238 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.076 4.076 3 C -0.161 4.161 4 C -0.097 4.097 5 C -0.148 4.148 6 C 0.121 3.879 7 C -0.175 4.175 8 N -0.492 5.492 9 C 0.065 3.935 10 C -0.118 4.118 11 C -0.063 4.063 12 S -0.225 6.225 13 C -0.521 4.521 14 H 0.052 0.948 15 C 0.041 3.959 16 N -0.921 5.921 17 Si 0.923 3.077 18 H -0.262 1.262 19 H -0.261 1.261 20 H -0.232 1.232 21 C 0.046 3.954 22 C -0.115 4.115 23 C -0.076 4.076 24 H 0.067 0.933 25 H 0.081 0.919 26 H 0.067 0.933 27 H 0.136 0.864 28 H 0.141 0.859 29 H 0.121 0.879 30 H 0.097 0.903 31 H 0.086 0.914 32 H 0.067 0.933 33 H 0.062 0.938 34 H 0.066 0.934 35 H 0.070 0.930 36 H 0.277 0.723 37 H 0.042 0.958 38 H 0.097 0.903 39 H 0.098 0.902 40 H 0.070 0.930 41 H 0.075 0.925 42 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.140 13.935 -17.791 24.769 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.077 4.077 3 C -0.180 4.180 4 C -0.115 4.115 5 C -0.151 4.151 6 C 0.023 3.977 7 C -0.196 4.196 8 N -0.204 5.204 9 C -0.063 4.063 10 C -0.158 4.158 11 C -0.212 4.212 12 S 0.002 5.998 13 C -0.669 4.669 14 H 0.070 0.930 15 C -0.164 4.164 16 N -0.559 5.559 17 Si 0.744 3.256 18 H -0.187 1.187 19 H -0.185 1.185 20 H -0.155 1.155 21 C -0.080 4.080 22 C -0.153 4.153 23 C -0.113 4.113 24 H 0.086 0.914 25 H 0.100 0.900 26 H 0.086 0.914 27 H 0.154 0.846 28 H 0.159 0.841 29 H 0.139 0.861 30 H 0.116 0.884 31 H 0.105 0.895 32 H 0.085 0.915 33 H 0.081 0.919 34 H 0.085 0.915 35 H 0.089 0.911 36 H 0.086 0.914 37 H 0.060 0.940 38 H 0.115 0.885 39 H 0.116 0.884 40 H 0.089 0.911 41 H 0.093 0.907 42 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 10.495 14.540 -17.609 25.133 hybrid contribution -0.990 -1.086 0.944 1.746 sum 9.506 13.454 -16.665 23.433 Atomic orbital electron populations 1.20818 0.90232 1.03462 1.02525 1.19980 0.96929 0.92974 0.97781 1.21129 0.94507 0.97838 1.04477 1.21209 0.94255 0.97632 0.98437 1.19836 0.96905 0.91816 1.06536 1.18708 0.92450 0.89252 0.97332 1.21158 0.92878 0.98584 1.06962 1.58476 1.03943 1.06221 1.51778 1.22331 0.99618 0.95052 0.89294 1.21846 0.99998 0.98096 0.95840 1.22996 1.02494 1.01458 0.94301 1.83934 1.72855 1.32961 1.10002 1.22321 1.39456 1.05924 0.99152 0.93005 1.25725 0.93416 0.98900 0.98349 1.70034 1.37523 1.32868 1.15494 0.85752 0.81467 0.79401 0.78965 1.18704 1.18536 1.15523 1.22347 0.86201 1.01681 0.97792 1.21693 1.00331 0.93002 1.00243 1.20553 0.89544 0.98648 1.02563 0.91434 0.89970 0.91431 0.84590 0.84117 0.86113 0.88450 0.89542 0.91453 0.91884 0.91539 0.91088 0.91364 0.94014 0.88507 0.88390 0.91105 0.90659 0.89144 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.32 10.01 71.24 0.71 -1.60 16 2 C -0.08 -1.86 5.87 -19.95 -0.12 -1.98 16 3 C -0.16 -3.55 9.71 22.24 0.22 -3.33 16 4 C -0.10 -2.06 9.63 22.32 0.21 -1.84 16 5 C -0.15 -3.40 5.74 -19.71 -0.11 -3.52 16 6 C 0.12 3.12 4.86 38.30 0.19 3.31 16 7 C -0.18 -4.67 7.38 22.50 0.17 -4.51 16 8 N -0.49 -11.71 4.72 -695.83 -3.29 -15.00 16 9 C 0.06 1.60 4.84 86.30 0.42 2.01 16 10 C -0.12 -3.61 4.61 30.59 0.14 -3.47 16 11 C -0.06 -2.43 5.67 71.98 0.41 -2.03 16 12 S -0.23 -11.04 19.41 -56.49 -1.10 -12.14 16 13 C -0.52 -30.99 10.04 67.95 0.68 -30.31 16 14 H 0.05 3.34 8.03 -2.91 -0.02 3.32 16 15 C 0.04 2.42 5.50 84.86 0.47 2.89 16 16 N -0.92 -56.97 13.97 21.65 0.30 -56.67 16 17 Si 0.92 44.62 27.74 68.60 1.90 46.52 16 18 H -0.26 -12.35 7.11 99.48 0.71 -11.64 16 19 H -0.26 -11.88 7.11 99.48 0.71 -11.17 16 20 H -0.23 -10.87 6.74 99.48 0.67 -10.20 16 21 C 0.05 0.91 5.26 86.52 0.45 1.36 16 22 C -0.12 -1.84 6.19 30.74 0.19 -1.65 16 23 C -0.08 -1.31 5.81 29.89 0.17 -1.14 16 24 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 25 H 0.08 1.34 8.09 -2.39 -0.02 1.32 16 26 H 0.07 1.31 8.08 -2.39 -0.02 1.29 16 27 H 0.14 2.37 8.06 -2.92 -0.02 2.35 16 28 H 0.14 2.23 8.06 -2.91 -0.02 2.20 16 29 H 0.12 3.20 5.92 -2.91 -0.02 3.18 16 30 H 0.10 2.15 8.10 -2.39 -0.02 2.13 16 31 H 0.09 2.12 6.14 -2.39 -0.01 2.11 16 32 H 0.07 2.07 6.59 -2.38 -0.02 2.06 16 33 H 0.06 2.11 6.23 -2.39 -0.01 2.09 16 34 H 0.07 2.57 8.14 -2.40 -0.02 2.55 16 35 H 0.07 2.69 8.14 -2.39 -0.02 2.67 16 36 H 0.28 15.77 8.31 -92.70 -0.77 14.99 16 37 H 0.04 0.93 6.46 -2.39 -0.02 0.91 16 38 H 0.10 1.65 8.14 -2.39 -0.02 1.63 16 39 H 0.10 1.12 8.14 -2.39 -0.02 1.10 16 40 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 41 H 0.08 1.26 8.14 -2.38 -0.02 1.24 16 42 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 Total: -1.00 -68.05 341.12 2.98 -65.08 By element: Atomic # 1 Polarization: 17.03 SS G_CDS: 0.95 Total: 17.98 kcal Atomic # 6 Polarization: -49.99 SS G_CDS: 4.20 Total: -45.79 kcal Atomic # 7 Polarization: -68.68 SS G_CDS: -2.98 Total: -71.66 kcal Atomic # 14 Polarization: 44.62 SS G_CDS: 1.90 Total: 46.52 kcal Atomic # 16 Polarization: -11.04 SS G_CDS: -1.10 Total: -12.14 kcal Total: -68.05 2.98 -65.08 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000074990643.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.056 kcal (2) G-P(sol) polarization free energy of solvation -68.055 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.998 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.975 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.080 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.023 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds