Wall clock time and date at job start Tue Mar 31 2020 06:35:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46898 * 111.00266 * 2 1 4 4 C 1.50700 * 109.46887 * 293.95075 * 3 2 1 5 5 H 1.07998 * 120.00258 * 0.02562 * 4 3 2 6 6 C 1.37881 * 119.99893 * 179.97438 * 4 3 2 7 7 N 1.31513 * 119.99932 * 180.02562 * 6 4 3 8 8 Si 1.86805 * 119.99824 * 0.02562 * 6 4 3 9 9 H 1.48498 * 109.46743 * 89.99998 * 8 6 4 10 10 H 1.48495 * 109.46783 * 209.99490 * 8 6 4 11 11 H 1.48493 * 109.47223 * 329.99734 * 8 6 4 12 12 C 1.46898 * 110.99948 * 123.95345 * 2 1 3 13 13 C 1.50701 * 109.47194 * 66.04246 * 12 2 1 14 14 O 1.21238 * 119.99952 * 0.02562 * 13 12 2 15 15 N 1.34773 * 120.00270 * 180.02562 * 13 12 2 16 16 C 1.34780 * 120.00134 * 180.02562 * 15 13 12 17 17 O 1.21538 * 119.99944 * 0.02562 * 16 15 13 18 18 N 1.34783 * 119.99713 * 179.97438 * 16 15 13 19 19 C 1.39939 * 119.99600 * 185.31867 * 18 16 15 20 20 C 1.38868 * 120.07087 * 33.31493 * 19 18 16 21 21 C 1.38112 * 119.92469 * 179.97438 * 20 19 18 22 22 C 1.38276 * 120.07563 * 0.02562 * 21 20 19 23 23 C 1.38288 * 120.14008 * 359.97438 * 22 21 20 24 24 C 1.38117 * 120.06573 * 0.02562 * 23 22 21 25 25 H 1.09004 * 109.47229 * 296.04949 * 1 2 3 26 26 H 1.09005 * 109.46925 * 56.04615 * 1 2 3 27 27 H 1.09000 * 109.47497 * 176.04980 * 1 2 3 28 28 H 1.08996 * 109.47329 * 53.95284 * 3 2 1 29 29 H 1.09005 * 109.47338 * 173.95617 * 3 2 1 30 30 H 0.96998 * 120.00027 * 179.97438 * 7 6 4 31 31 H 1.08999 * 109.47360 * 306.04542 * 12 2 1 32 32 H 1.08998 * 109.47239 * 186.04292 * 12 2 1 33 33 H 0.97000 * 120.00107 * 0.02562 * 15 13 12 34 34 H 0.96993 * 120.00072 * 5.32121 * 18 16 15 35 35 H 1.08001 * 120.03693 * 359.70012 * 20 19 18 36 36 H 1.08003 * 119.96131 * 179.97438 * 21 20 19 37 37 H 1.07994 * 119.93107 * 180.02562 * 22 21 20 38 38 H 1.07990 * 119.96209 * 180.02562 * 23 22 21 39 39 H 1.07995 * 120.02688 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6370 2.0470 -1.2985 5 1 1.0741 1.5114 -2.0485 6 6 2.0270 3.3494 -1.5286 7 7 1.7137 3.9392 -2.6615 8 14 3.0001 4.2761 -0.2309 9 1 4.4525 4.0635 -0.4559 10 1 2.6920 5.7258 -0.3227 11 1 2.6295 3.7756 1.1171 12 6 1.9954 -0.7660 1.1376 13 6 1.6368 -2.2204 0.9729 14 8 1.0056 -2.5831 0.0035 15 7 2.0178 -3.1180 1.9033 16 6 1.6976 -4.4188 1.7557 17 8 1.0655 -4.7825 0.7834 18 7 2.0791 -5.3164 2.6860 19 6 1.8447 -6.6805 2.4795 20 6 1.8904 -7.2079 1.1957 21 6 1.6591 -8.5547 0.9954 22 6 1.3817 -9.3777 2.0715 23 6 1.3355 -8.8556 3.3512 24 6 1.5659 -7.5095 3.5581 25 1 -0.3634 0.4513 0.9233 26 1 -0.3633 0.5740 -0.8525 27 1 -0.3634 -1.0252 -0.0708 28 1 1.5612 1.9273 0.8309 29 1 3.0798 1.3443 0.1082 30 1 1.9877 4.8555 -2.8232 31 1 1.5611 -0.3872 2.0628 32 1 3.0797 -0.6611 1.1756 33 1 2.5226 -2.8278 2.6791 34 1 2.5161 -5.0169 3.4984 35 1 2.1022 -6.5648 0.3543 36 1 1.6941 -8.9654 -0.0028 37 1 1.2017 -10.4305 1.9122 38 1 1.1190 -9.5010 4.1895 39 1 1.5292 -7.1024 4.5577 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000078646263.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:35:30 Heat of formation + Delta-G solvation = -9.166444 kcal Electronic energy + Delta-G solvation = -22194.308614 eV Core-core repulsion = 18717.214824 eV Total energy + Delta-G solvation = -3477.093791 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.137 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.48942 -39.72887 -38.22787 -36.16229 -35.04447 -34.50485 -32.47903 -31.16370 -29.91441 -28.81979 -27.41640 -24.73108 -23.48404 -22.92758 -21.57616 -20.62720 -20.25651 -19.00739 -18.00987 -16.97531 -16.74842 -16.36512 -16.15170 -15.34623 -15.06144 -14.57130 -14.43957 -14.39118 -14.14340 -13.84912 -13.73000 -13.54258 -13.04384 -12.61007 -12.19790 -11.97931 -11.86117 -11.55550 -11.26158 -11.04345 -10.92795 -10.70360 -10.59128 -10.46488 -10.10501 -10.00857 -9.48668 -9.25688 -9.16010 -8.59625 -8.41633 -7.48463 -6.06357 -4.04477 1.00860 1.15412 2.07066 2.14682 3.13416 3.25030 3.31659 3.32936 3.57015 3.60763 4.38481 4.60031 4.65996 4.69190 4.76389 4.90636 5.13059 5.21933 5.24457 5.30490 5.42967 5.48753 5.66972 5.83809 6.04071 6.09893 6.14778 6.22380 6.23462 6.31649 6.40643 6.69192 6.77278 6.80964 6.96160 7.21840 7.49885 7.78910 7.89921 8.08100 8.17753 8.61693 9.04366 9.53536 11.06749 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.047571 B = 0.002599 C = 0.002531 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 588.451449 B =10770.459673 C =11061.436997 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 N -0.515 5.515 3 C 0.163 3.837 4 C -0.510 4.510 5 H 0.083 0.917 6 C 0.068 3.932 7 N -0.898 5.898 8 Si 0.876 3.124 9 H -0.275 1.275 10 H -0.286 1.286 11 H -0.268 1.268 12 C 0.039 3.961 13 C 0.513 3.487 14 O -0.438 6.438 15 N -0.692 5.692 16 C 0.693 3.307 17 O -0.511 6.511 18 N -0.683 5.683 19 C 0.164 3.836 20 C -0.120 4.120 21 C -0.099 4.099 22 C -0.138 4.138 23 C -0.102 4.102 24 C -0.148 4.148 25 H 0.009 0.991 26 H 0.084 0.916 27 H 0.066 0.934 28 H -0.008 1.008 29 H 0.026 0.974 30 H 0.264 0.736 31 H 0.060 0.940 32 H 0.105 0.895 33 H 0.409 0.591 34 H 0.408 0.592 35 H 0.137 0.863 36 H 0.126 0.874 37 H 0.122 0.878 38 H 0.125 0.875 39 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.362 -22.447 18.306 29.160 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 N -0.240 5.240 3 C 0.038 3.962 4 C -0.548 4.548 5 H 0.101 0.899 6 C -0.134 4.134 7 N -0.537 5.537 8 Si 0.703 3.297 9 H -0.201 1.201 10 H -0.212 1.212 11 H -0.193 1.193 12 C -0.094 4.094 13 C 0.298 3.702 14 O -0.302 6.302 15 N -0.360 5.360 16 C 0.394 3.606 17 O -0.380 6.380 18 N -0.333 5.333 19 C 0.069 3.931 20 C -0.141 4.141 21 C -0.117 4.117 22 C -0.157 4.157 23 C -0.121 4.121 24 C -0.169 4.169 25 H 0.027 0.973 26 H 0.102 0.898 27 H 0.084 0.916 28 H 0.009 0.991 29 H 0.044 0.956 30 H 0.074 0.926 31 H 0.078 0.922 32 H 0.123 0.877 33 H 0.243 0.757 34 H 0.244 0.756 35 H 0.155 0.845 36 H 0.144 0.856 37 H 0.140 0.860 38 H 0.143 0.857 39 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 2.541 -22.921 16.173 28.167 hybrid contribution 0.858 1.381 2.350 2.858 sum 3.400 -21.540 18.523 28.612 Atomic orbital electron populations 1.22441 0.87081 1.01691 1.00670 1.61693 1.08551 1.16254 1.37470 1.20247 0.94905 0.83273 0.97804 1.21007 1.35824 0.97221 1.00795 0.89884 1.24908 0.95838 0.97299 0.95332 1.69891 1.46704 1.13257 1.23819 0.86857 0.80863 0.79404 0.82560 1.20119 1.21167 1.19325 1.22011 1.02502 0.89081 0.95775 1.21291 0.79202 0.88010 0.81665 1.90811 1.32877 1.79514 1.27019 1.44358 1.56697 1.07309 1.27596 1.16172 0.80187 0.80763 0.83481 1.91099 1.39734 1.77933 1.29255 1.42750 1.63092 1.04585 1.22881 1.17513 0.99477 0.81590 0.94495 1.21279 1.00679 0.95588 0.96517 1.21087 0.98397 0.92997 0.99247 1.21153 1.01854 0.99979 0.92745 1.20919 0.99458 0.94420 0.97263 1.20842 1.03929 0.94220 0.97887 0.97295 0.89778 0.91553 0.99059 0.95633 0.92596 0.92216 0.87705 0.75679 0.75641 0.84488 0.85603 0.85985 0.85699 0.85728 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.60 9.03 60.06 0.54 1.14 16 2 N -0.52 -10.92 4.49 -245.82 -1.10 -12.02 16 3 C 0.16 3.85 3.79 -4.98 -0.02 3.83 16 4 C -0.51 -14.51 9.01 -34.44 -0.31 -14.82 16 5 H 0.08 2.62 7.37 -52.49 -0.39 2.23 16 6 C 0.07 1.95 5.47 -17.82 -0.10 1.86 16 7 N -0.90 -27.51 13.96 55.43 0.77 -26.73 16 8 Si 0.88 20.90 27.47 -169.99 -4.67 16.23 16 9 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 10 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 11 H -0.27 -6.05 6.54 56.52 0.37 -5.68 16 12 C 0.04 0.59 5.45 -4.98 -0.03 0.56 16 13 C 0.51 8.04 7.49 -10.99 -0.08 7.96 16 14 O -0.44 -9.21 12.71 -18.21 -0.23 -9.45 16 15 N -0.69 -7.51 5.24 -15.78 -0.08 -7.60 16 16 C 0.69 8.97 8.24 -86.91 -0.72 8.25 16 17 O -0.51 -9.32 12.42 -18.47 -0.23 -9.55 16 18 N -0.68 -6.04 5.35 -14.23 -0.08 -6.12 16 19 C 0.16 1.67 6.28 -83.69 -0.53 1.14 16 20 C -0.12 -1.41 8.66 -39.39 -0.34 -1.75 16 21 C -0.10 -0.95 10.04 -39.61 -0.40 -1.35 16 22 C -0.14 -1.11 10.04 -39.55 -0.40 -1.51 16 23 C -0.10 -0.76 10.04 -39.61 -0.40 -1.15 16 24 C -0.15 -1.18 9.96 -39.39 -0.39 -1.57 16 25 H 0.01 0.16 8.14 -51.93 -0.42 -0.26 16 26 H 0.08 1.92 6.76 -51.93 -0.35 1.57 16 27 H 0.07 1.36 5.88 -51.93 -0.31 1.05 16 28 H -0.01 -0.19 7.18 -51.93 -0.37 -0.56 16 29 H 0.03 0.58 7.36 -51.93 -0.38 0.20 16 30 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 31 H 0.06 0.76 8.12 -51.93 -0.42 0.34 16 32 H 0.10 1.35 7.93 -51.93 -0.41 0.94 16 33 H 0.41 2.26 8.72 -40.82 -0.36 1.90 16 34 H 0.41 1.84 8.83 -40.82 -0.36 1.48 16 35 H 0.14 1.91 6.40 -52.49 -0.34 1.57 16 36 H 0.13 1.01 8.06 -52.48 -0.42 0.59 16 37 H 0.12 0.70 8.06 -52.49 -0.42 0.28 16 38 H 0.13 0.62 8.06 -52.49 -0.42 0.19 16 39 H 0.12 0.67 8.06 -52.49 -0.42 0.25 16 LS Contribution 329.13 15.07 4.96 4.96 Total: -1.00 -38.03 329.13 -8.79 -46.82 By element: Atomic # 1 Polarization: 5.83 SS G_CDS: -4.96 Total: 0.87 kcal Atomic # 6 Polarization: 5.75 SS G_CDS: -3.16 Total: 2.59 kcal Atomic # 7 Polarization: -51.98 SS G_CDS: -0.49 Total: -52.47 kcal Atomic # 8 Polarization: -18.53 SS G_CDS: -0.46 Total: -18.99 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -4.67 Total: 16.23 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -38.03 -8.79 -46.82 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078646263.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.649 kcal (2) G-P(sol) polarization free energy of solvation -38.029 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.380 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.786 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.815 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.166 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds