Wall clock time and date at job start Tue Mar 31 2020 06:35:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46898 * 111.00266 * 2 1 4 4 C 1.50700 * 109.46887 * 293.95075 * 3 2 1 5 5 H 1.07998 * 120.00258 * 0.02562 * 4 3 2 6 6 C 1.37881 * 119.99893 * 179.97438 * 4 3 2 7 7 N 1.31513 * 119.99932 * 180.02562 * 6 4 3 8 8 Si 1.86805 * 119.99824 * 0.02562 * 6 4 3 9 9 H 1.48498 * 109.46743 * 89.99998 * 8 6 4 10 10 H 1.48495 * 109.46783 * 209.99490 * 8 6 4 11 11 H 1.48493 * 109.47223 * 329.99734 * 8 6 4 12 12 C 1.46898 * 110.99948 * 123.95345 * 2 1 3 13 13 C 1.50701 * 109.47194 * 66.04246 * 12 2 1 14 14 O 1.21238 * 119.99952 * 0.02562 * 13 12 2 15 15 N 1.34773 * 120.00270 * 180.02562 * 13 12 2 16 16 C 1.34780 * 120.00134 * 180.02562 * 15 13 12 17 17 O 1.21538 * 119.99944 * 0.02562 * 16 15 13 18 18 N 1.34783 * 119.99713 * 179.97438 * 16 15 13 19 19 C 1.39939 * 119.99600 * 185.31867 * 18 16 15 20 20 C 1.38868 * 120.07087 * 33.31493 * 19 18 16 21 21 C 1.38112 * 119.92469 * 179.97438 * 20 19 18 22 22 C 1.38276 * 120.07563 * 0.02562 * 21 20 19 23 23 C 1.38288 * 120.14008 * 359.97438 * 22 21 20 24 24 C 1.38117 * 120.06573 * 0.02562 * 23 22 21 25 25 H 1.09004 * 109.47229 * 296.04949 * 1 2 3 26 26 H 1.09005 * 109.46925 * 56.04615 * 1 2 3 27 27 H 1.09000 * 109.47497 * 176.04980 * 1 2 3 28 28 H 1.08996 * 109.47329 * 53.95284 * 3 2 1 29 29 H 1.09005 * 109.47338 * 173.95617 * 3 2 1 30 30 H 0.96998 * 120.00027 * 179.97438 * 7 6 4 31 31 H 1.08999 * 109.47360 * 306.04542 * 12 2 1 32 32 H 1.08998 * 109.47239 * 186.04292 * 12 2 1 33 33 H 0.97000 * 120.00107 * 0.02562 * 15 13 12 34 34 H 0.96993 * 120.00072 * 5.32121 * 18 16 15 35 35 H 1.08001 * 120.03693 * 359.70012 * 20 19 18 36 36 H 1.08003 * 119.96131 * 179.97438 * 21 20 19 37 37 H 1.07994 * 119.93107 * 180.02562 * 22 21 20 38 38 H 1.07990 * 119.96209 * 180.02562 * 23 22 21 39 39 H 1.07995 * 120.02688 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6370 2.0470 -1.2985 5 1 1.0741 1.5114 -2.0485 6 6 2.0270 3.3494 -1.5286 7 7 1.7137 3.9392 -2.6615 8 14 3.0001 4.2761 -0.2309 9 1 4.4525 4.0635 -0.4559 10 1 2.6920 5.7258 -0.3227 11 1 2.6295 3.7756 1.1171 12 6 1.9954 -0.7660 1.1376 13 6 1.6368 -2.2204 0.9729 14 8 1.0056 -2.5831 0.0035 15 7 2.0178 -3.1180 1.9033 16 6 1.6976 -4.4188 1.7557 17 8 1.0655 -4.7825 0.7834 18 7 2.0791 -5.3164 2.6860 19 6 1.8447 -6.6805 2.4795 20 6 1.8904 -7.2079 1.1957 21 6 1.6591 -8.5547 0.9954 22 6 1.3817 -9.3777 2.0715 23 6 1.3355 -8.8556 3.3512 24 6 1.5659 -7.5095 3.5581 25 1 -0.3634 0.4513 0.9233 26 1 -0.3633 0.5740 -0.8525 27 1 -0.3634 -1.0252 -0.0708 28 1 1.5612 1.9273 0.8309 29 1 3.0798 1.3443 0.1082 30 1 1.9877 4.8555 -2.8232 31 1 1.5611 -0.3872 2.0628 32 1 3.0797 -0.6611 1.1756 33 1 2.5226 -2.8278 2.6791 34 1 2.5161 -5.0169 3.4984 35 1 2.1022 -6.5648 0.3543 36 1 1.6941 -8.9654 -0.0028 37 1 1.2017 -10.4305 1.9122 38 1 1.1190 -9.5010 4.1895 39 1 1.5292 -7.1024 4.5577 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000078646263.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:35:29 Heat of formation + Delta-G solvation = -39.068415 kcal Electronic energy + Delta-G solvation = -22195.605261 eV Core-core repulsion = 18717.214824 eV Total energy + Delta-G solvation = -3478.390438 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.137 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.52183 -40.67964 -39.26622 -37.70786 -36.06886 -35.54245 -34.59630 -31.83109 -30.93366 -30.27354 -29.00641 -26.30357 -24.62168 -23.68228 -22.69109 -21.88094 -21.62671 -19.97248 -19.08322 -18.71626 -17.93052 -17.42756 -16.95316 -16.50637 -16.36804 -16.07834 -15.90665 -15.57205 -15.29091 -15.04331 -14.87659 -14.48077 -14.27954 -13.86455 -13.81937 -13.48084 -12.90129 -12.70654 -12.65960 -12.43982 -12.36777 -12.20210 -11.92348 -11.85644 -11.51627 -11.40724 -11.27649 -10.75677 -10.69585 -9.86278 -9.14775 -9.05467 -8.24798 -6.30304 0.27526 0.47033 1.02178 1.14044 1.39355 1.43168 1.53209 2.10841 2.38780 2.70519 2.90650 3.08110 3.26548 3.67457 3.98900 4.07584 4.26491 4.31802 4.37192 4.47658 4.49951 4.54739 4.59280 4.61556 4.86602 4.92889 5.03721 5.12417 5.21426 5.26455 5.34177 5.52366 5.54572 5.57173 5.64854 5.95131 6.09038 6.22067 6.47198 6.64510 6.77000 7.07136 7.19891 7.32889 8.92632 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.047571 B = 0.002599 C = 0.002531 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 588.451449 B =10770.459673 C =11061.436997 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 N -0.548 5.548 3 C 0.174 3.826 4 C -0.524 4.524 5 H 0.025 0.975 6 C -0.001 4.001 7 N -0.954 5.954 8 Si 0.959 3.041 9 H -0.263 1.263 10 H -0.287 1.287 11 H -0.236 1.236 12 C 0.040 3.960 13 C 0.519 3.481 14 O -0.502 6.502 15 N -0.666 5.666 16 C 0.690 3.310 17 O -0.568 6.568 18 N -0.658 5.658 19 C 0.142 3.858 20 C -0.151 4.151 21 C -0.114 4.114 22 C -0.138 4.138 23 C -0.100 4.100 24 C -0.140 4.140 25 H 0.032 0.968 26 H 0.044 0.956 27 H 0.063 0.937 28 H 0.005 0.995 29 H 0.046 0.954 30 H 0.266 0.734 31 H 0.102 0.898 32 H 0.138 0.862 33 H 0.437 0.563 34 H 0.431 0.569 35 H 0.102 0.898 36 H 0.130 0.870 37 H 0.147 0.853 38 H 0.159 0.841 39 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.102 -23.337 23.491 33.504 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 N -0.273 5.273 3 C 0.048 3.952 4 C -0.562 4.562 5 H 0.044 0.956 6 C -0.197 4.197 7 N -0.595 5.595 8 Si 0.781 3.219 9 H -0.187 1.187 10 H -0.213 1.213 11 H -0.159 1.159 12 C -0.091 4.091 13 C 0.306 3.694 14 O -0.371 6.371 15 N -0.335 5.335 16 C 0.391 3.609 17 O -0.442 6.442 18 N -0.310 5.310 19 C 0.048 3.952 20 C -0.172 4.172 21 C -0.133 4.133 22 C -0.156 4.156 23 C -0.118 4.118 24 C -0.160 4.160 25 H 0.050 0.950 26 H 0.063 0.937 27 H 0.081 0.919 28 H 0.023 0.977 29 H 0.064 0.936 30 H 0.075 0.925 31 H 0.120 0.880 32 H 0.155 0.845 33 H 0.277 0.723 34 H 0.271 0.729 35 H 0.120 0.880 36 H 0.148 0.852 37 H 0.165 0.835 38 H 0.176 0.824 39 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 4.336 -23.851 21.477 32.387 hybrid contribution 0.272 1.478 0.710 1.662 sum 4.607 -22.373 22.187 31.844 Atomic orbital electron populations 1.22222 0.87554 1.00929 1.00021 1.61420 1.08526 1.15631 1.41699 1.20013 0.95930 0.84266 0.94982 1.21299 1.35121 0.97689 1.02087 0.95648 1.26035 0.97154 0.98396 0.98127 1.70092 1.48713 1.13877 1.26823 0.85549 0.79105 0.77118 0.80102 1.18736 1.21347 1.15908 1.22158 1.04385 0.87526 0.95029 1.21459 0.77924 0.88805 0.81189 1.90810 1.35973 1.80483 1.29848 1.43863 1.55963 1.06100 1.27615 1.16381 0.79698 0.81459 0.83316 1.91083 1.42366 1.78878 1.31859 1.42438 1.62131 1.03694 1.22701 1.17727 1.00737 0.82115 0.94647 1.21200 1.03126 0.96298 0.96575 1.21254 0.98965 0.92596 1.00472 1.21495 1.00589 1.00986 0.92567 1.21392 0.97847 0.94673 0.97926 1.21201 1.02180 0.94185 0.98436 0.94952 0.93748 0.91857 0.97698 0.93639 0.92480 0.88032 0.84451 0.72256 0.72859 0.88004 0.85199 0.83531 0.82359 0.82496 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.72 9.03 127.69 1.15 2.88 16 2 N -0.55 -22.81 4.49 -931.65 -4.18 -27.00 16 3 C 0.17 7.90 3.79 85.56 0.32 8.22 16 4 C -0.52 -30.65 9.01 25.60 0.23 -30.42 16 5 H 0.03 1.72 7.37 -2.91 -0.02 1.70 16 6 C 0.00 -0.04 5.47 84.66 0.46 0.42 16 7 N -0.95 -60.68 13.96 21.45 0.30 -60.38 16 8 Si 0.96 42.16 27.47 68.60 1.88 44.05 16 9 H -0.26 -10.96 7.11 99.48 0.71 -10.25 16 10 H -0.29 -12.63 7.11 99.48 0.71 -11.92 16 11 H -0.24 -9.10 6.54 99.48 0.65 -8.44 16 12 C 0.04 1.09 5.45 85.56 0.47 1.55 16 13 C 0.52 15.66 7.49 87.66 0.66 16.32 16 14 O -0.50 -21.84 12.71 19.86 0.25 -21.59 16 15 N -0.67 -13.06 5.24 -440.52 -2.31 -15.37 16 16 C 0.69 17.53 8.24 179.05 1.48 19.00 16 17 O -0.57 -21.78 12.42 18.93 0.24 -21.55 16 18 N -0.66 -10.49 5.35 -317.22 -1.70 -12.19 16 19 C 0.14 2.74 6.28 38.15 0.24 2.98 16 20 C -0.15 -3.73 8.66 22.39 0.19 -3.54 16 21 C -0.11 -2.24 10.04 22.25 0.22 -2.02 16 22 C -0.14 -1.93 10.04 22.29 0.22 -1.71 16 23 C -0.10 -1.14 10.04 22.25 0.22 -0.91 16 24 C -0.14 -1.77 9.96 22.39 0.22 -1.55 16 25 H 0.03 1.17 8.14 -2.38 -0.02 1.15 16 26 H 0.04 2.17 6.76 -2.38 -0.02 2.15 16 27 H 0.06 2.70 5.88 -2.39 -0.01 2.68 16 28 H 0.01 0.23 7.18 -2.39 -0.02 0.21 16 29 H 0.05 1.89 7.36 -2.38 -0.02 1.88 16 30 H 0.27 15.70 8.31 -92.71 -0.77 14.93 16 31 H 0.10 2.02 8.12 -2.39 -0.02 2.00 16 32 H 0.14 2.87 7.93 -2.39 -0.02 2.85 16 33 H 0.44 3.07 8.72 -92.71 -0.81 2.27 16 34 H 0.43 2.43 8.83 -92.71 -0.82 1.61 16 35 H 0.10 3.18 6.40 -2.91 -0.02 3.17 16 36 H 0.13 2.24 8.06 -2.91 -0.02 2.21 16 37 H 0.15 1.27 8.06 -2.91 -0.02 1.25 16 38 H 0.16 0.76 8.06 -2.92 -0.02 0.74 16 39 H 0.16 0.93 8.06 -2.91 -0.02 0.90 16 Total: -1.00 -91.70 329.13 -0.01 -91.72 By element: Atomic # 1 Polarization: 11.67 SS G_CDS: -0.59 Total: 11.08 kcal Atomic # 6 Polarization: 5.14 SS G_CDS: 6.10 Total: 11.23 kcal Atomic # 7 Polarization: -107.05 SS G_CDS: -7.89 Total: -114.94 kcal Atomic # 8 Polarization: -43.62 SS G_CDS: 0.49 Total: -43.13 kcal Atomic # 14 Polarization: 42.16 SS G_CDS: 1.88 Total: 44.05 kcal Total: -91.70 -0.01 -91.72 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078646263.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.647 kcal (2) G-P(sol) polarization free energy of solvation -91.704 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.057 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.011 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.716 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.068 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds