Wall clock time and date at job start Tue Mar 31 2020 06:35:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.46495 * 120.00093 * 2 1 4 4 C 1.50698 * 109.47574 * 269.99988 * 3 2 1 5 5 H 1.08002 * 119.99552 * 0.02562 * 4 3 2 6 6 C 1.37877 * 120.00258 * 179.97438 * 4 3 2 7 7 N 1.31513 * 120.00041 * 0.02562 * 6 4 3 8 8 Si 1.86797 * 119.99893 * 179.97438 * 6 4 3 9 9 H 1.48500 * 109.47466 * 0.02562 * 8 6 4 10 10 H 1.48497 * 109.47313 * 120.00416 * 8 6 4 11 11 H 1.48503 * 109.47295 * 240.00371 * 8 6 4 12 12 C 1.34771 * 119.99937 * 180.02562 * 2 1 3 13 13 O 1.21281 * 120.00105 * 180.02562 * 12 2 1 14 14 C 1.50700 * 120.00071 * 359.97438 * 12 2 1 15 15 N 1.46501 * 109.47362 * 180.02562 * 14 12 2 16 16 C 1.38880 * 120.00136 * 180.02562 * 15 14 12 17 17 C 1.38957 * 120.17463 * 5.55541 * 16 15 14 18 18 C 1.37953 * 120.06338 * 179.97438 * 17 16 15 19 19 C 1.38610 * 120.42455 * 0.02562 * 18 17 16 20 20 C 1.37755 * 120.35011 * 359.97438 * 19 18 17 21 21 C 1.39730 * 119.92714 * 359.97438 * 20 19 18 22 22 C 1.47432 * 120.20702 * 180.02562 * 21 20 19 23 23 N 1.34773 * 120.00187 * 354.10732 * 22 21 20 24 24 O 1.21606 * 119.99741 * 174.10848 * 22 21 20 25 25 H 1.08998 * 109.47413 * 270.00009 * 1 2 3 26 26 H 1.09001 * 109.46876 * 30.00038 * 1 2 3 27 27 H 1.08997 * 109.46853 * 149.99509 * 1 2 3 28 28 H 1.09005 * 109.47112 * 30.00447 * 3 2 1 29 29 H 1.09003 * 109.46997 * 150.00021 * 3 2 1 30 30 H 0.97003 * 119.99799 * 179.97438 * 7 6 4 31 31 H 1.09000 * 109.47013 * 60.00215 * 14 12 2 32 32 H 1.09000 * 109.47172 * 300.00489 * 14 12 2 33 33 H 0.96997 * 119.99763 * 359.97438 * 15 14 12 34 34 H 1.07998 * 119.96750 * 0.25145 * 17 16 15 35 35 H 1.08004 * 119.78937 * 180.02562 * 18 17 16 36 36 H 1.07994 * 119.82784 * 179.97438 * 19 18 17 37 37 H 1.08001 * 120.03310 * 180.02562 * 20 19 18 38 38 H 0.97000 * 119.99487 * 359.97438 * 23 22 21 39 39 H 0.96994 * 119.99816 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4488 1.7038 -1.4208 5 1 2.0975 1.0962 -2.2417 6 6 3.1261 2.8780 -1.6727 7 7 3.5534 3.6181 -0.6730 8 14 3.4381 3.4169 -3.4338 9 1 2.8610 2.4164 -4.3673 10 1 2.8001 4.7373 -3.6678 11 1 4.9007 3.5257 -3.6665 12 6 2.1389 -1.1672 -0.0005 13 8 3.3517 -1.1672 -0.0001 14 6 1.3854 -2.4723 -0.0005 15 7 2.3374 -3.5858 -0.0005 16 6 1.8744 -4.8952 -0.0011 17 6 0.5144 -5.1551 -0.1179 18 6 0.0571 -6.4566 -0.1187 19 6 0.9467 -7.5132 -0.0029 20 6 2.2985 -7.2754 0.1139 21 6 2.7778 -5.9629 0.1153 22 6 4.2234 -5.7013 0.2394 23 7 5.0752 -6.7198 0.4709 24 8 4.6473 -4.5664 0.1329 25 1 -0.3634 0.0000 1.0276 26 1 -0.3633 0.8900 -0.5138 27 1 -0.3633 -0.8899 -0.5139 28 1 1.6085 2.0283 0.5139 29 1 3.1500 1.1383 0.5138 30 1 4.0303 4.4440 -0.8503 31 1 0.7584 -2.5298 -0.8903 32 1 0.7590 -2.5302 0.8896 33 1 3.2910 -3.4086 -0.0009 34 1 -0.1849 -4.3375 -0.2127 35 1 -1.0009 -6.6536 -0.2102 36 1 0.5781 -8.5283 -0.0042 37 1 2.9871 -8.1026 0.2035 38 1 4.7370 -7.6249 0.5563 39 1 6.0263 -6.5476 0.5521 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000078648837.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:35:53 Heat of formation + Delta-G solvation = -35.013776 kcal Electronic energy + Delta-G solvation = -22715.789225 eV Core-core repulsion = 19237.574610 eV Total energy + Delta-G solvation = -3478.214615 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.137 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.43590 -39.07597 -38.14693 -35.58280 -34.76943 -33.70492 -32.62497 -31.05429 -30.04942 -28.09950 -26.55911 -25.47055 -24.09382 -22.84132 -21.45844 -20.92203 -18.61461 -18.21986 -17.18841 -16.93310 -16.56338 -15.93510 -15.73195 -15.31997 -15.20558 -14.88839 -14.70722 -14.17306 -14.09227 -13.59400 -13.47749 -13.30135 -12.65801 -12.43128 -12.21622 -12.10003 -11.96880 -11.84671 -11.35760 -11.20150 -10.87717 -10.59770 -10.21404 -10.16009 -9.88596 -9.80881 -9.62147 -9.10884 -9.02685 -8.43803 -7.70596 -7.42877 -6.04491 -4.09286 0.86724 1.53192 2.87343 3.29104 3.30662 3.37199 3.38677 3.43736 3.46967 3.87598 4.05241 4.45296 4.64781 4.73577 4.93291 5.00128 5.25506 5.27549 5.30260 5.35480 5.43262 5.53166 5.64138 5.75341 5.88943 6.03585 6.16784 6.21058 6.42478 6.67188 6.68505 6.97640 7.16535 7.36250 7.42522 7.50114 7.91580 7.96665 8.22012 8.31262 8.42393 8.86510 9.01378 9.55782 11.03752 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.021361 B = 0.003613 C = 0.003322 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1310.461864 B = 7748.493680 C = 8426.688041 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.080 3.920 2 N -0.599 5.599 3 C 0.245 3.755 4 C -0.527 4.527 5 H 0.058 0.942 6 C 0.061 3.939 7 N -0.894 5.894 8 Si 0.899 3.101 9 H -0.273 1.273 10 H -0.283 1.283 11 H -0.282 1.282 12 C 0.496 3.504 13 O -0.527 6.527 14 C 0.093 3.907 15 N -0.705 5.705 16 C 0.285 3.715 17 C -0.216 4.216 18 C -0.039 4.039 19 C -0.203 4.203 20 C -0.033 4.033 21 C -0.238 4.238 22 C 0.568 3.432 23 N -0.854 5.854 24 O -0.536 6.536 25 H 0.047 0.953 26 H 0.077 0.923 27 H 0.057 0.943 28 H 0.035 0.965 29 H 0.045 0.955 30 H 0.263 0.737 31 H 0.087 0.913 32 H 0.086 0.914 33 H 0.432 0.568 34 H 0.128 0.872 35 H 0.124 0.876 36 H 0.121 0.879 37 H 0.121 0.879 38 H 0.399 0.601 39 H 0.403 0.597 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.108 -23.268 3.251 24.853 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.331 5.331 3 C 0.126 3.874 4 C -0.566 4.566 5 H 0.076 0.924 6 C -0.141 4.141 7 N -0.533 5.533 8 Si 0.727 3.273 9 H -0.198 1.198 10 H -0.209 1.209 11 H -0.208 1.208 12 C 0.281 3.719 13 O -0.403 6.403 14 C -0.035 4.035 15 N -0.343 5.343 16 C 0.171 3.829 17 C -0.239 4.239 18 C -0.058 4.058 19 C -0.223 4.223 20 C -0.052 4.052 21 C -0.247 4.247 22 C 0.356 3.644 23 N -0.418 5.418 24 O -0.414 6.414 25 H 0.066 0.934 26 H 0.096 0.904 27 H 0.076 0.924 28 H 0.053 0.947 29 H 0.063 0.937 30 H 0.073 0.927 31 H 0.105 0.895 32 H 0.104 0.896 33 H 0.285 0.715 34 H 0.146 0.854 35 H 0.142 0.858 36 H 0.139 0.861 37 H 0.139 0.861 38 H 0.228 0.772 39 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges -7.295 -22.033 3.205 23.430 hybrid contribution 0.548 0.057 -0.920 1.072 sum -6.747 -21.976 2.285 23.102 Atomic orbital electron populations 1.21694 0.81228 1.02802 1.00650 1.48110 1.06284 1.07565 1.71166 1.19336 0.92630 0.77776 0.97666 1.21462 1.36613 1.06283 0.92246 0.92374 1.24942 0.95292 0.96379 0.97525 1.69943 1.38347 1.14336 1.30692 0.86423 0.78136 0.78253 0.84496 1.19804 1.20939 1.20833 1.20135 0.88299 0.85087 0.78363 1.90724 1.13553 1.86548 1.49513 1.21298 0.92784 0.86648 1.02789 1.45639 1.12560 1.00814 1.75336 1.17831 0.92260 0.84317 0.88444 1.20729 0.93308 0.97871 1.12005 1.21049 0.99500 0.91951 0.93290 1.20721 0.92951 0.98978 1.09696 1.20947 0.95857 0.94171 0.94212 1.19175 0.92049 0.93474 1.19992 1.18225 0.86292 0.84608 0.75259 1.43647 1.10942 1.10430 1.76750 1.90612 1.78138 1.21459 1.51162 0.93436 0.90426 0.92445 0.94748 0.93733 0.92738 0.89473 0.89580 0.71528 0.85395 0.85847 0.86093 0.86119 0.77222 0.76600 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.23 10.24 59.85 0.61 1.84 16 2 N -0.60 -12.83 2.86 -182.96 -0.52 -13.36 16 3 C 0.24 6.52 5.16 -5.20 -0.03 6.49 16 4 C -0.53 -15.24 9.39 -34.44 -0.32 -15.56 16 5 H 0.06 1.68 7.81 -52.49 -0.41 1.27 16 6 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 7 N -0.89 -26.99 13.29 55.43 0.74 -26.26 16 8 Si 0.90 22.29 29.54 -169.99 -5.02 17.27 16 9 H -0.27 -6.69 7.11 56.52 0.40 -6.29 16 10 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 11 H -0.28 -7.02 7.11 56.52 0.40 -6.62 16 12 C 0.50 10.76 7.74 -10.99 -0.09 10.67 16 13 O -0.53 -14.09 15.25 5.56 0.08 -14.00 16 14 C 0.09 1.48 3.97 -5.19 -0.02 1.46 16 15 N -0.71 -12.25 5.56 -59.62 -0.33 -12.58 16 16 C 0.29 4.10 6.65 -83.61 -0.56 3.54 16 17 C -0.22 -2.46 9.30 -39.42 -0.37 -2.82 16 18 C -0.04 -0.35 10.03 -39.55 -0.40 -0.75 16 19 C -0.20 -1.73 10.02 -39.62 -0.40 -2.13 16 20 C -0.03 -0.30 9.52 -39.20 -0.37 -0.68 16 21 C -0.24 -3.09 5.89 -104.80 -0.62 -3.71 16 22 C 0.57 8.05 8.02 -12.52 -0.10 7.94 16 23 N -0.85 -7.62 8.82 30.43 0.27 -7.35 16 24 O -0.54 -10.32 14.48 5.27 0.08 -10.24 16 25 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 26 H 0.08 1.22 8.07 -51.93 -0.42 0.80 16 27 H 0.06 0.69 6.44 -51.93 -0.33 0.36 16 28 H 0.03 0.91 8.07 -51.93 -0.42 0.49 16 29 H 0.04 1.35 7.42 -51.93 -0.39 0.96 16 30 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 31 H 0.09 1.19 6.98 -51.93 -0.36 0.83 16 32 H 0.09 1.12 8.09 -51.93 -0.42 0.70 16 33 H 0.43 8.96 3.95 -40.94 -0.16 8.80 16 34 H 0.13 1.26 6.72 -52.49 -0.35 0.90 16 35 H 0.12 0.79 8.06 -52.48 -0.42 0.36 16 36 H 0.12 0.73 8.06 -52.49 -0.42 0.30 16 37 H 0.12 0.69 6.45 -52.49 -0.34 0.35 16 38 H 0.40 2.15 6.89 -40.82 -0.28 1.86 16 39 H 0.40 3.20 8.93 -40.82 -0.36 2.84 16 LS Contribution 330.90 15.07 4.99 4.99 Total: -1.00 -37.57 330.90 -7.12 -44.69 By element: Atomic # 1 Polarization: 13.51 SS G_CDS: -4.65 Total: 8.86 kcal Atomic # 6 Polarization: 10.73 SS G_CDS: -2.75 Total: 7.98 kcal Atomic # 7 Polarization: -59.70 SS G_CDS: 0.15 Total: -59.55 kcal Atomic # 8 Polarization: -24.41 SS G_CDS: 0.16 Total: -24.25 kcal Atomic # 14 Polarization: 22.29 SS G_CDS: -5.02 Total: 17.27 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -37.57 -7.12 -44.69 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078648837.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.680 kcal (2) G-P(sol) polarization free energy of solvation -37.571 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.891 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.122 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.694 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.014 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds