Wall clock time and date at job start Tue Mar 31 2020 06:35:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.46495 * 120.00093 * 2 1 4 4 C 1.50698 * 109.47574 * 269.99988 * 3 2 1 5 5 H 1.08002 * 119.99552 * 0.02562 * 4 3 2 6 6 C 1.37877 * 120.00258 * 179.97438 * 4 3 2 7 7 N 1.31513 * 120.00041 * 0.02562 * 6 4 3 8 8 Si 1.86797 * 119.99893 * 179.97438 * 6 4 3 9 9 H 1.48500 * 109.47466 * 0.02562 * 8 6 4 10 10 H 1.48497 * 109.47313 * 120.00416 * 8 6 4 11 11 H 1.48503 * 109.47295 * 240.00371 * 8 6 4 12 12 C 1.34771 * 119.99937 * 180.02562 * 2 1 3 13 13 O 1.21281 * 120.00105 * 180.02562 * 12 2 1 14 14 C 1.50700 * 120.00071 * 359.97438 * 12 2 1 15 15 N 1.46501 * 109.47362 * 180.02562 * 14 12 2 16 16 C 1.38880 * 120.00136 * 180.02562 * 15 14 12 17 17 C 1.38957 * 120.17463 * 5.55541 * 16 15 14 18 18 C 1.37953 * 120.06338 * 179.97438 * 17 16 15 19 19 C 1.38610 * 120.42455 * 0.02562 * 18 17 16 20 20 C 1.37755 * 120.35011 * 359.97438 * 19 18 17 21 21 C 1.39730 * 119.92714 * 359.97438 * 20 19 18 22 22 C 1.47432 * 120.20702 * 180.02562 * 21 20 19 23 23 N 1.34773 * 120.00187 * 354.10732 * 22 21 20 24 24 O 1.21606 * 119.99741 * 174.10848 * 22 21 20 25 25 H 1.08998 * 109.47413 * 270.00009 * 1 2 3 26 26 H 1.09001 * 109.46876 * 30.00038 * 1 2 3 27 27 H 1.08997 * 109.46853 * 149.99509 * 1 2 3 28 28 H 1.09005 * 109.47112 * 30.00447 * 3 2 1 29 29 H 1.09003 * 109.46997 * 150.00021 * 3 2 1 30 30 H 0.97003 * 119.99799 * 179.97438 * 7 6 4 31 31 H 1.09000 * 109.47013 * 60.00215 * 14 12 2 32 32 H 1.09000 * 109.47172 * 300.00489 * 14 12 2 33 33 H 0.96997 * 119.99763 * 359.97438 * 15 14 12 34 34 H 1.07998 * 119.96750 * 0.25145 * 17 16 15 35 35 H 1.08004 * 119.78937 * 180.02562 * 18 17 16 36 36 H 1.07994 * 119.82784 * 179.97438 * 19 18 17 37 37 H 1.08001 * 120.03310 * 180.02562 * 20 19 18 38 38 H 0.97000 * 119.99487 * 359.97438 * 23 22 21 39 39 H 0.96994 * 119.99816 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4488 1.7038 -1.4208 5 1 2.0975 1.0962 -2.2417 6 6 3.1261 2.8780 -1.6727 7 7 3.5534 3.6181 -0.6730 8 14 3.4381 3.4169 -3.4338 9 1 2.8610 2.4164 -4.3673 10 1 2.8001 4.7373 -3.6678 11 1 4.9007 3.5257 -3.6665 12 6 2.1389 -1.1672 -0.0005 13 8 3.3517 -1.1672 -0.0001 14 6 1.3854 -2.4723 -0.0005 15 7 2.3374 -3.5858 -0.0005 16 6 1.8744 -4.8952 -0.0011 17 6 0.5144 -5.1551 -0.1179 18 6 0.0571 -6.4566 -0.1187 19 6 0.9467 -7.5132 -0.0029 20 6 2.2985 -7.2754 0.1139 21 6 2.7778 -5.9629 0.1153 22 6 4.2234 -5.7013 0.2394 23 7 5.0752 -6.7198 0.4709 24 8 4.6473 -4.5664 0.1329 25 1 -0.3634 0.0000 1.0276 26 1 -0.3633 0.8900 -0.5138 27 1 -0.3633 -0.8899 -0.5139 28 1 1.6085 2.0283 0.5139 29 1 3.1500 1.1383 0.5138 30 1 4.0303 4.4440 -0.8503 31 1 0.7584 -2.5298 -0.8903 32 1 0.7590 -2.5302 0.8896 33 1 3.2910 -3.4086 -0.0009 34 1 -0.1849 -4.3375 -0.2127 35 1 -1.0009 -6.6536 -0.2102 36 1 0.5781 -8.5283 -0.0042 37 1 2.9871 -8.1026 0.2035 38 1 4.7370 -7.6249 0.5563 39 1 6.0263 -6.5476 0.5521 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000078648837.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:35:53 Heat of formation + Delta-G solvation = -65.577215 kcal Electronic energy + Delta-G solvation = -22717.114555 eV Core-core repulsion = 19237.574610 eV Total energy + Delta-G solvation = -3479.539945 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.137 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.45425 -40.65932 -39.12610 -36.90185 -36.31548 -34.81350 -34.65074 -31.89177 -31.18556 -29.80560 -27.83419 -27.08577 -24.94959 -24.69948 -22.45372 -21.89198 -20.13008 -19.18086 -18.74810 -18.30968 -17.87434 -17.39404 -17.00581 -16.78553 -16.56810 -16.06389 -15.91775 -15.62601 -15.01320 -14.94303 -14.64887 -14.24487 -14.19945 -13.90617 -13.78154 -13.50414 -13.25146 -13.13959 -12.85121 -12.81827 -12.57025 -12.25721 -12.05565 -11.72630 -11.13354 -10.96948 -10.77089 -10.75675 -10.68705 -9.87107 -9.50803 -8.40628 -8.26532 -6.41571 0.04971 0.73959 1.33034 1.36363 1.47790 1.66714 1.92990 2.05201 2.35756 2.62072 2.69915 3.03156 3.05173 3.56939 3.93246 3.99161 4.15289 4.25347 4.28990 4.44660 4.54760 4.61475 4.71142 4.72012 4.92718 4.97569 5.05266 5.17448 5.25089 5.49874 5.51160 5.69707 5.76735 5.84903 5.96924 6.01010 6.28442 6.49177 6.62859 6.68685 6.81614 7.21174 7.36019 7.39369 8.81056 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.021361 B = 0.003613 C = 0.003322 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1310.461864 B = 7748.493680 C = 8426.688041 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.073 3.927 2 N -0.604 5.604 3 C 0.258 3.742 4 C -0.545 4.545 5 H 0.053 0.947 6 C 0.006 3.994 7 N -0.928 5.928 8 Si 0.970 3.030 9 H -0.267 1.267 10 H -0.265 1.265 11 H -0.283 1.283 12 C 0.484 3.516 13 O -0.592 6.592 14 C 0.112 3.888 15 N -0.736 5.736 16 C 0.251 3.749 17 C -0.224 4.224 18 C -0.033 4.033 19 C -0.193 4.193 20 C -0.029 4.029 21 C -0.260 4.260 22 C 0.556 3.444 23 N -0.829 5.829 24 O -0.599 6.599 25 H 0.077 0.923 26 H 0.071 0.929 27 H 0.098 0.902 28 H 0.030 0.970 29 H -0.006 1.006 30 H 0.268 0.732 31 H 0.115 0.885 32 H 0.119 0.881 33 H 0.414 0.586 34 H 0.142 0.858 35 H 0.158 0.842 36 H 0.157 0.843 37 H 0.156 0.844 38 H 0.418 0.582 39 H 0.409 0.591 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.999 -26.378 2.334 28.674 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 N -0.335 5.335 3 C 0.137 3.863 4 C -0.583 4.583 5 H 0.072 0.928 6 C -0.193 4.193 7 N -0.568 5.568 8 Si 0.794 3.206 9 H -0.192 1.192 10 H -0.189 1.189 11 H -0.209 1.209 12 C 0.272 3.728 13 O -0.473 6.473 14 C -0.015 4.015 15 N -0.374 5.374 16 C 0.141 3.859 17 C -0.247 4.247 18 C -0.052 4.052 19 C -0.213 4.213 20 C -0.048 4.048 21 C -0.269 4.269 22 C 0.346 3.654 23 N -0.393 5.393 24 O -0.481 6.481 25 H 0.095 0.905 26 H 0.089 0.911 27 H 0.117 0.883 28 H 0.048 0.952 29 H 0.012 0.988 30 H 0.077 0.923 31 H 0.132 0.868 32 H 0.137 0.863 33 H 0.263 0.737 34 H 0.160 0.840 35 H 0.175 0.825 36 H 0.174 0.826 37 H 0.173 0.827 38 H 0.251 0.749 39 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges -10.276 -25.253 2.304 27.361 hybrid contribution 1.412 0.842 -0.569 1.739 sum -8.864 -24.411 1.735 26.028 Atomic orbital electron populations 1.22062 0.77138 1.04551 1.03142 1.48120 1.08781 1.05884 1.70702 1.18795 0.91101 0.80242 0.96169 1.21731 1.37049 1.06569 0.92973 0.92845 1.25894 0.94800 0.96416 1.02185 1.70060 1.38851 1.14834 1.33039 0.85331 0.77829 0.78526 0.78887 1.19175 1.18938 1.20929 1.21235 0.87955 0.86925 0.76694 1.90686 1.16715 1.87657 1.52265 1.21261 0.91965 0.82920 1.05401 1.45693 1.11726 1.02238 1.77790 1.18278 0.93956 0.83338 0.90329 1.20994 0.92069 0.99632 1.11978 1.21516 1.01438 0.90976 0.91280 1.21232 0.92371 1.00635 1.07093 1.21344 0.97257 0.93350 0.92862 1.19387 0.91184 0.95008 1.21312 1.18677 0.87597 0.84395 0.74734 1.43443 1.10803 1.10482 1.74583 1.90594 1.79185 1.24056 1.54292 0.90504 0.91060 0.88325 0.95183 0.98811 0.92329 0.86760 0.86323 0.73749 0.84019 0.82454 0.82566 0.82657 0.74920 0.75998 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 2.10 10.24 127.77 1.31 3.41 16 2 N -0.60 -26.51 2.86 -851.14 -2.43 -28.94 16 3 C 0.26 14.52 5.16 85.63 0.44 14.96 16 4 C -0.54 -32.60 9.39 25.60 0.24 -32.36 16 5 H 0.05 3.17 7.81 -2.91 -0.02 3.14 16 6 C 0.01 0.36 5.46 84.65 0.46 0.82 16 7 N -0.93 -57.82 13.29 21.45 0.28 -57.54 16 8 Si 0.97 46.45 29.54 68.60 2.03 48.48 16 9 H -0.27 -12.44 7.11 99.48 0.71 -11.73 16 10 H -0.26 -11.81 7.11 99.48 0.71 -11.10 16 11 H -0.28 -13.54 7.11 99.48 0.71 -12.84 16 12 C 0.48 21.82 7.74 87.66 0.68 22.50 16 13 O -0.59 -34.18 15.25 -3.03 -0.05 -34.23 16 14 C 0.11 3.51 3.97 85.63 0.34 3.85 16 15 N -0.74 -26.34 5.56 -342.53 -1.90 -28.25 16 16 C 0.25 7.07 6.65 38.71 0.26 7.32 16 17 C -0.22 -4.46 9.30 22.37 0.21 -4.25 16 18 C -0.03 -0.45 10.03 22.29 0.22 -0.23 16 19 C -0.19 -2.36 10.02 22.24 0.22 -2.13 16 20 C -0.03 -0.44 9.52 22.52 0.21 -0.23 16 21 C -0.26 -6.56 5.89 -19.98 -0.12 -6.67 16 22 C 0.56 16.21 8.02 86.67 0.69 16.91 16 23 N -0.83 -14.25 8.82 -175.88 -1.55 -15.80 16 24 O -0.60 -24.87 14.48 -4.05 -0.06 -24.93 16 25 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 26 H 0.07 2.16 8.07 -2.39 -0.02 2.14 16 27 H 0.10 2.04 6.44 -2.39 -0.02 2.02 16 28 H 0.03 1.68 8.07 -2.38 -0.02 1.66 16 29 H -0.01 -0.41 7.42 -2.39 -0.02 -0.43 16 30 H 0.27 15.55 8.31 -92.71 -0.77 14.78 16 31 H 0.11 2.87 6.98 -2.39 -0.02 2.86 16 32 H 0.12 2.85 8.09 -2.39 -0.02 2.83 16 33 H 0.41 18.46 3.95 -94.60 -0.37 18.09 16 34 H 0.14 2.28 6.72 -2.91 -0.02 2.26 16 35 H 0.16 1.08 8.06 -2.91 -0.02 1.05 16 36 H 0.16 0.86 8.06 -2.91 -0.02 0.84 16 37 H 0.16 1.10 6.45 -2.91 -0.02 1.08 16 38 H 0.42 3.56 6.89 -92.71 -0.64 2.92 16 39 H 0.41 6.43 8.93 -92.71 -0.83 5.60 16 Total: -1.00 -91.11 330.90 0.77 -90.34 By element: Atomic # 1 Polarization: 27.71 SS G_CDS: -0.73 Total: 26.98 kcal Atomic # 6 Polarization: 18.71 SS G_CDS: 5.18 Total: 23.89 kcal Atomic # 7 Polarization: -124.93 SS G_CDS: -5.60 Total: -130.53 kcal Atomic # 8 Polarization: -59.06 SS G_CDS: -0.10 Total: -59.16 kcal Atomic # 14 Polarization: 46.45 SS G_CDS: 2.03 Total: 48.48 kcal Total: -91.11 0.77 -90.34 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078648837.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.767 kcal (2) G-P(sol) polarization free energy of solvation -91.113 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.346 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.769 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.344 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.577 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds