Wall clock time and date at job start Tue Mar 31 2020 07:01:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86802 * 120.00044 * 2 1 4 4 H 1.48494 * 109.47289 * 240.00518 * 3 2 1 5 5 H 1.48500 * 109.47017 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.46917 * 120.00824 * 3 2 1 7 7 C 1.38815 * 119.99973 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00108 * 159.27003 * 7 2 1 9 9 N 1.36941 * 119.99914 * 339.26411 * 7 2 1 10 10 C 1.46490 * 119.99898 * 321.60041 * 9 7 2 11 11 C 1.53004 * 109.47487 * 269.99784 * 10 9 7 12 12 S 1.81401 * 109.47429 * 179.97438 * 11 10 9 13 13 C 1.76198 * 102.99846 * 180.02562 * 12 11 10 14 14 C 1.38980 * 120.07625 * 180.02562 * 13 12 11 15 15 C 1.38081 * 119.91445 * 180.25776 * 14 13 12 16 16 C 1.38303 * 120.08355 * 359.44378 * 15 14 13 17 17 C 1.38302 * 120.15697 * 0.55721 * 16 15 14 18 18 C 1.38078 * 120.08410 * 359.72256 * 17 16 15 19 19 C 1.46498 * 119.99723 * 141.60484 * 9 7 2 20 20 C 1.54259 * 110.03480 * 62.54487 * 19 9 7 21 21 C 1.54966 * 104.15970 * 217.13581 * 20 19 9 22 22 C 1.54878 * 102.77930 * 37.89019 * 21 20 19 23 23 C 1.53880 * 110.03015 * 305.32631 * 19 9 7 24 24 H 0.96993 * 120.00006 * 355.01048 * 1 2 3 25 25 H 1.09001 * 109.47134 * 150.00049 * 10 9 7 26 26 H 1.09006 * 109.47836 * 29.99951 * 10 9 7 27 27 H 1.09001 * 109.46717 * 60.00010 * 11 10 9 28 28 H 1.08992 * 109.46865 * 300.00640 * 11 10 9 29 29 H 1.07995 * 120.04304 * 359.97438 * 14 13 12 30 30 H 1.07999 * 119.95629 * 179.70010 * 15 14 13 31 31 H 1.07996 * 119.92313 * 180.25443 * 16 15 14 32 32 H 1.08004 * 119.95698 * 179.74240 * 17 16 15 33 33 H 1.07997 * 120.04673 * 179.97438 * 18 17 16 34 34 H 1.09003 * 110.01541 * 183.94426 * 19 9 7 35 35 H 1.08995 * 110.48931 * 335.78735 * 20 19 9 36 36 H 1.09005 * 110.48487 * 98.42957 * 20 19 9 37 37 H 1.09000 * 110.72153 * 279.57580 * 21 20 19 38 38 H 1.09002 * 110.92376 * 156.29890 * 21 20 19 39 39 H 1.08999 * 110.49080 * 203.40234 * 22 21 20 40 40 H 1.09000 * 110.59763 * 80.81686 * 22 21 20 41 41 H 1.08997 * 110.03393 * 238.57116 * 23 19 9 42 42 H 1.09005 * 110.03223 * 0.02562 * 23 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1038 1.6965 -1.2125 5 1 1.2852 2.7465 0.0006 6 1 3.1041 1.6963 1.2124 7 6 2.0103 -1.2022 -0.0005 8 1 3.0378 -1.2323 -0.3316 9 7 1.3921 -2.3499 0.4188 10 6 0.4699 -2.3114 1.5564 11 6 1.2462 -2.5608 2.8511 12 16 0.1044 -2.5124 4.2598 13 6 1.1612 -2.8142 5.6370 14 6 0.6354 -2.8535 6.9229 15 6 1.4675 -3.0850 8.0003 16 6 2.8206 -3.2889 7.8000 17 6 3.3473 -3.2505 6.5218 18 6 2.5223 -3.0139 5.4401 19 6 1.6530 -3.6161 -0.2701 20 6 3.1426 -3.9939 -0.1352 21 6 3.4982 -4.6284 -1.5036 22 6 2.6999 -3.7557 -2.5036 23 6 1.3713 -3.4650 -1.7753 24 1 -0.4850 0.8368 0.0731 25 1 -0.2902 -3.0830 1.4342 26 1 -0.0094 -1.3335 1.6029 27 1 2.0063 -1.7892 2.9733 28 1 1.7254 -3.5387 2.8046 29 1 -0.4218 -2.6987 7.0797 30 1 1.0604 -3.1109 9.0003 31 1 3.4683 -3.4738 8.6441 32 1 4.4052 -3.4061 6.3694 33 1 2.9343 -2.9836 4.4422 34 1 1.0282 -4.4047 0.1493 35 1 3.7473 -3.1045 0.0414 36 1 3.2815 -4.7167 0.6688 37 1 3.1662 -5.6657 -1.5457 38 1 4.5683 -4.5586 -1.6987 39 1 2.5164 -4.3047 -3.4272 40 1 3.2318 -2.8274 -2.7120 41 1 0.6106 -4.1808 -2.0866 42 1 1.0409 -2.4493 -1.9932 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084222365.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:01:22 Heat of formation + Delta-G solvation = 28.551150 kcal Electronic energy + Delta-G solvation = -20887.320298 eV Core-core repulsion = 17958.155279 eV Total energy + Delta-G solvation = -2929.165019 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 291.135 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -38.75630 -37.82951 -34.68501 -31.63021 -30.95927 -30.81816 -29.49423 -27.86842 -26.48757 -24.25300 -22.64223 -22.42901 -21.00577 -19.99146 -19.09213 -17.55234 -16.40805 -15.97977 -15.45519 -14.95169 -14.82602 -14.48684 -14.23903 -13.79434 -13.72248 -13.37498 -12.99797 -12.72687 -12.65153 -12.53256 -12.05267 -11.38259 -11.19440 -11.08347 -10.91458 -10.80252 -10.64558 -10.46330 -10.35323 -10.27630 -10.18624 -9.89118 -9.76769 -9.64556 -9.52938 -9.48287 -8.89843 -8.51636 -7.02595 -6.67927 -5.83872 -3.47711 1.34752 1.45743 1.97538 2.98129 3.33699 3.40549 3.42202 3.81750 4.43379 4.94748 5.00582 5.16198 5.21113 5.31676 5.38803 5.44790 5.48221 5.60570 5.69299 5.76452 5.83467 6.00549 6.06652 6.12772 6.21669 6.25206 6.36368 6.41343 6.43858 6.47023 6.49905 6.55865 6.56833 6.60337 6.79079 6.86045 6.99600 7.00345 7.11259 7.35324 7.53766 7.77800 8.45150 9.10426 9.72446 10.30400 11.12819 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.014017 B = 0.004841 C = 0.004161 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1997.031491 B = 5782.301684 C = 6726.943299 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.879 5.879 2 C 0.018 3.982 3 Si 0.891 3.109 4 H -0.280 1.280 5 H -0.289 1.289 6 H -0.283 1.283 7 C -0.257 4.257 8 H 0.062 0.938 9 N -0.567 5.567 10 C 0.161 3.839 11 C -0.108 4.108 12 S -0.138 6.138 13 C -0.070 4.070 14 C -0.110 4.110 15 C -0.105 4.105 16 C -0.139 4.139 17 C -0.101 4.101 18 C -0.135 4.135 19 C 0.169 3.831 20 C -0.136 4.136 21 C -0.122 4.122 22 C -0.117 4.117 23 C -0.130 4.130 24 H 0.256 0.744 25 H 0.034 0.966 26 H 0.103 0.897 27 H 0.083 0.917 28 H 0.068 0.932 29 H 0.124 0.876 30 H 0.122 0.878 31 H 0.119 0.881 32 H 0.121 0.879 33 H 0.127 0.873 34 H 0.048 0.952 35 H 0.073 0.927 36 H 0.045 0.955 37 H 0.055 0.945 38 H 0.052 0.948 39 H 0.047 0.953 40 H 0.061 0.939 41 H 0.041 0.959 42 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.833 -7.695 8.525 12.107 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.520 5.520 2 C -0.184 4.184 3 Si 0.720 3.280 4 H -0.206 1.206 5 H -0.215 1.215 6 H -0.209 1.209 7 C -0.387 4.387 8 H 0.080 0.920 9 N -0.286 5.286 10 C 0.032 3.968 11 C -0.258 4.258 12 S 0.108 5.892 13 C -0.184 4.184 14 C -0.134 4.134 15 C -0.125 4.125 16 C -0.160 4.160 17 C -0.121 4.121 18 C -0.159 4.159 19 C 0.062 3.938 20 C -0.176 4.176 21 C -0.160 4.160 22 C -0.155 4.155 23 C -0.169 4.169 24 H 0.066 0.934 25 H 0.052 0.948 26 H 0.121 0.879 27 H 0.102 0.898 28 H 0.086 0.914 29 H 0.142 0.858 30 H 0.140 0.860 31 H 0.137 0.863 32 H 0.139 0.861 33 H 0.145 0.855 34 H 0.066 0.934 35 H 0.092 0.908 36 H 0.064 0.936 37 H 0.073 0.927 38 H 0.071 0.929 39 H 0.066 0.934 40 H 0.080 0.920 41 H 0.060 0.940 42 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 2.426 -7.325 8.237 11.287 hybrid contribution 1.939 0.659 0.193 2.057 sum 4.365 -6.666 8.430 11.600 Atomic orbital electron populations 1.70034 1.05507 1.26464 1.50038 1.25175 0.94913 0.98711 0.99576 0.86568 0.79391 0.83735 0.78322 1.20629 1.21516 1.20889 1.18863 0.93819 0.85404 1.40591 0.92024 1.43899 1.52117 1.03717 1.28905 1.20676 0.90673 1.03494 0.81914 1.24890 1.01542 1.03837 0.95578 1.85551 1.17187 1.88059 0.98420 1.22015 0.96779 1.01883 0.97721 1.20782 0.99878 1.01966 0.90770 1.21025 0.93706 0.99513 0.98282 1.21077 0.95412 1.02598 0.96917 1.21046 0.99436 0.99085 0.92544 1.21323 0.92521 1.02184 0.99877 1.21106 0.92914 0.88253 0.91553 1.22868 0.99743 0.99745 0.95211 1.22432 0.98742 0.98382 0.96491 1.22253 0.97352 0.98988 0.96936 1.22517 0.95431 1.02688 0.96264 0.93359 0.94767 0.87902 0.89841 0.91357 0.85766 0.86012 0.86313 0.86103 0.85537 0.93352 0.90832 0.93611 0.92670 0.92917 0.93383 0.91972 0.94003 0.89465 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.13 11.48 55.49 0.64 -23.49 16 2 C 0.02 0.46 4.96 -17.43 -0.09 0.37 16 3 Si 0.89 20.88 29.61 -169.99 -5.03 15.85 16 4 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 5 H -0.29 -6.89 7.11 56.52 0.40 -6.48 16 6 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 7 C -0.26 -6.47 7.75 -15.06 -0.12 -6.58 16 8 H 0.06 1.57 6.94 -52.48 -0.36 1.21 16 9 N -0.57 -13.01 2.38 -164.39 -0.39 -13.40 16 10 C 0.16 3.58 5.29 -4.04 -0.02 3.56 16 11 C -0.11 -2.08 4.66 37.16 0.17 -1.90 16 12 S -0.14 -2.45 21.92 -107.50 -2.36 -4.81 16 13 C -0.07 -1.14 6.11 -39.03 -0.24 -1.38 16 14 C -0.11 -1.54 9.79 -39.36 -0.39 -1.93 16 15 C -0.11 -1.26 10.04 -39.61 -0.40 -1.66 16 16 C -0.14 -1.63 10.04 -39.53 -0.40 -2.02 16 17 C -0.10 -1.31 10.04 -39.62 -0.40 -1.71 16 18 C -0.13 -2.07 9.36 -39.37 -0.37 -2.44 16 19 C 0.17 3.38 3.42 -66.81 -0.23 3.15 16 20 C -0.14 -2.42 6.43 -25.03 -0.16 -2.58 16 21 C -0.12 -1.90 6.91 -24.70 -0.17 -2.07 16 22 C -0.12 -1.97 6.83 -25.08 -0.17 -2.15 16 23 C -0.13 -2.53 6.25 -25.61 -0.16 -2.69 16 24 H 0.26 6.89 8.32 -40.82 -0.34 6.55 16 25 H 0.03 0.74 7.90 -51.93 -0.41 0.33 16 26 H 0.10 2.62 5.55 -51.93 -0.29 2.34 16 27 H 0.08 1.73 7.75 -51.92 -0.40 1.32 16 28 H 0.07 1.25 7.75 -51.93 -0.40 0.85 16 29 H 0.12 1.58 8.06 -52.49 -0.42 1.16 16 30 H 0.12 1.11 8.06 -52.49 -0.42 0.69 16 31 H 0.12 1.06 8.06 -52.49 -0.42 0.64 16 32 H 0.12 1.29 8.06 -52.48 -0.42 0.87 16 33 H 0.13 1.98 5.88 -52.49 -0.31 1.67 16 34 H 0.05 0.94 7.81 -51.93 -0.41 0.53 16 35 H 0.07 1.44 6.64 -51.93 -0.34 1.10 16 36 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 39 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 40 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 41 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 42 H 0.09 2.03 7.17 -51.93 -0.37 1.66 16 LS Contribution 347.39 15.07 5.24 5.24 Total: -1.00 -26.55 347.39 -11.70 -38.24 By element: Atomic # 1 Polarization: 11.05 SS G_CDS: -6.66 Total: 4.39 kcal Atomic # 6 Polarization: -18.89 SS G_CDS: -3.13 Total: -22.02 kcal Atomic # 7 Polarization: -37.13 SS G_CDS: 0.25 Total: -36.89 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.03 Total: 15.85 kcal Atomic # 16 Polarization: -2.45 SS G_CDS: -2.36 Total: -4.81 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -26.55 -11.70 -38.24 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084222365.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.796 kcal (2) G-P(sol) polarization free energy of solvation -26.546 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.250 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.698 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.245 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.551 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds