Wall clock time and date at job start Tue Mar 31 2020 07:01:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86802 * 120.00044 * 2 1 4 4 H 1.48494 * 109.47289 * 240.00518 * 3 2 1 5 5 H 1.48500 * 109.47017 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.46917 * 120.00824 * 3 2 1 7 7 C 1.38815 * 119.99973 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00108 * 159.27003 * 7 2 1 9 9 N 1.36941 * 119.99914 * 339.26411 * 7 2 1 10 10 C 1.46490 * 119.99898 * 321.60041 * 9 7 2 11 11 C 1.53004 * 109.47487 * 269.99784 * 10 9 7 12 12 S 1.81401 * 109.47429 * 179.97438 * 11 10 9 13 13 C 1.76198 * 102.99846 * 180.02562 * 12 11 10 14 14 C 1.38980 * 120.07625 * 180.02562 * 13 12 11 15 15 C 1.38081 * 119.91445 * 180.25776 * 14 13 12 16 16 C 1.38303 * 120.08355 * 359.44378 * 15 14 13 17 17 C 1.38302 * 120.15697 * 0.55721 * 16 15 14 18 18 C 1.38078 * 120.08410 * 359.72256 * 17 16 15 19 19 C 1.46498 * 119.99723 * 141.60484 * 9 7 2 20 20 C 1.54259 * 110.03480 * 62.54487 * 19 9 7 21 21 C 1.54966 * 104.15970 * 217.13581 * 20 19 9 22 22 C 1.54878 * 102.77930 * 37.89019 * 21 20 19 23 23 C 1.53880 * 110.03015 * 305.32631 * 19 9 7 24 24 H 0.96993 * 120.00006 * 355.01048 * 1 2 3 25 25 H 1.09001 * 109.47134 * 150.00049 * 10 9 7 26 26 H 1.09006 * 109.47836 * 29.99951 * 10 9 7 27 27 H 1.09001 * 109.46717 * 60.00010 * 11 10 9 28 28 H 1.08992 * 109.46865 * 300.00640 * 11 10 9 29 29 H 1.07995 * 120.04304 * 359.97438 * 14 13 12 30 30 H 1.07999 * 119.95629 * 179.70010 * 15 14 13 31 31 H 1.07996 * 119.92313 * 180.25443 * 16 15 14 32 32 H 1.08004 * 119.95698 * 179.74240 * 17 16 15 33 33 H 1.07997 * 120.04673 * 179.97438 * 18 17 16 34 34 H 1.09003 * 110.01541 * 183.94426 * 19 9 7 35 35 H 1.08995 * 110.48931 * 335.78735 * 20 19 9 36 36 H 1.09005 * 110.48487 * 98.42957 * 20 19 9 37 37 H 1.09000 * 110.72153 * 279.57580 * 21 20 19 38 38 H 1.09002 * 110.92376 * 156.29890 * 21 20 19 39 39 H 1.08999 * 110.49080 * 203.40234 * 22 21 20 40 40 H 1.09000 * 110.59763 * 80.81686 * 22 21 20 41 41 H 1.08997 * 110.03393 * 238.57116 * 23 19 9 42 42 H 1.09005 * 110.03223 * 0.02562 * 23 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1038 1.6965 -1.2125 5 1 1.2852 2.7465 0.0006 6 1 3.1041 1.6963 1.2124 7 6 2.0103 -1.2022 -0.0005 8 1 3.0378 -1.2323 -0.3316 9 7 1.3921 -2.3499 0.4188 10 6 0.4699 -2.3114 1.5564 11 6 1.2462 -2.5608 2.8511 12 16 0.1044 -2.5124 4.2598 13 6 1.1612 -2.8142 5.6370 14 6 0.6354 -2.8535 6.9229 15 6 1.4675 -3.0850 8.0003 16 6 2.8206 -3.2889 7.8000 17 6 3.3473 -3.2505 6.5218 18 6 2.5223 -3.0139 5.4401 19 6 1.6530 -3.6161 -0.2701 20 6 3.1426 -3.9939 -0.1352 21 6 3.4982 -4.6284 -1.5036 22 6 2.6999 -3.7557 -2.5036 23 6 1.3713 -3.4650 -1.7753 24 1 -0.4850 0.8368 0.0731 25 1 -0.2902 -3.0830 1.4342 26 1 -0.0094 -1.3335 1.6029 27 1 2.0063 -1.7892 2.9733 28 1 1.7254 -3.5387 2.8046 29 1 -0.4218 -2.6987 7.0797 30 1 1.0604 -3.1109 9.0003 31 1 3.4683 -3.4738 8.6441 32 1 4.4052 -3.4061 6.3694 33 1 2.9343 -2.9836 4.4422 34 1 1.0282 -4.4047 0.1493 35 1 3.7473 -3.1045 0.0414 36 1 3.2815 -4.7167 0.6688 37 1 3.1662 -5.6657 -1.5457 38 1 4.5683 -4.5586 -1.6987 39 1 2.5164 -4.3047 -3.4272 40 1 3.2318 -2.8274 -2.7120 41 1 0.6106 -4.1808 -2.0866 42 1 1.0409 -2.4493 -1.9932 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084222365.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:01:21 Heat of formation + Delta-G solvation = 18.458850 kcal Electronic energy + Delta-G solvation = -20887.757933 eV Core-core repulsion = 17958.155279 eV Total energy + Delta-G solvation = -2929.602654 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 291.135 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -39.79523 -39.42078 -36.37503 -33.48999 -32.14916 -31.86076 -31.06866 -29.33177 -28.17798 -26.00842 -23.83660 -23.54073 -22.59572 -21.36102 -20.77200 -18.72953 -18.19266 -17.23364 -17.07497 -16.56937 -16.13451 -15.95388 -15.61210 -15.29134 -15.13258 -14.62017 -14.39026 -14.08514 -14.06182 -13.90197 -13.66165 -13.11896 -12.85061 -12.57767 -12.45230 -12.24794 -12.15900 -12.03584 -11.83013 -11.77847 -11.73237 -11.58807 -11.24755 -11.18793 -11.08639 -10.66977 -10.48382 -9.93514 -8.59284 -8.38447 -7.80140 -5.47572 0.28118 0.42147 0.60204 1.43421 1.46733 1.51444 1.56248 2.50097 2.78472 3.24403 3.64071 3.93678 3.96960 4.01345 4.03967 4.08767 4.23747 4.27690 4.37075 4.52450 4.56979 4.66731 4.70115 4.76028 4.80425 4.91727 4.95283 4.96060 5.06749 5.07997 5.21739 5.23969 5.32422 5.36697 5.46282 5.55918 5.56423 5.60668 5.61789 5.66770 5.81259 6.01126 6.48196 7.16151 7.84404 8.37728 9.12393 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.014017 B = 0.004841 C = 0.004161 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1997.031491 B = 5782.301684 C = 6726.943299 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C -0.030 4.030 3 Si 0.942 3.058 4 H -0.275 1.275 5 H -0.295 1.295 6 H -0.283 1.283 7 C -0.246 4.246 8 H 0.057 0.943 9 N -0.581 5.581 10 C 0.166 3.834 11 C -0.085 4.085 12 S -0.158 6.158 13 C -0.094 4.094 14 C -0.119 4.119 15 C -0.101 4.101 16 C -0.128 4.128 17 C -0.106 4.106 18 C -0.154 4.154 19 C 0.159 3.841 20 C -0.129 4.129 21 C -0.111 4.111 22 C -0.113 4.113 23 C -0.128 4.128 24 H 0.250 0.750 25 H 0.032 0.968 26 H 0.070 0.930 27 H 0.064 0.936 28 H 0.076 0.924 29 H 0.132 0.868 30 H 0.157 0.843 31 H 0.156 0.844 32 H 0.144 0.856 33 H 0.113 0.887 34 H 0.054 0.946 35 H 0.050 0.950 36 H 0.060 0.940 37 H 0.078 0.922 38 H 0.070 0.930 39 H 0.073 0.927 40 H 0.046 0.954 41 H 0.054 0.946 42 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.692 -9.483 10.383 15.170 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.228 4.228 3 Si 0.770 3.230 4 H -0.200 1.200 5 H -0.221 1.221 6 H -0.209 1.209 7 C -0.377 4.377 8 H 0.075 0.925 9 N -0.301 5.301 10 C 0.038 3.962 11 C -0.236 4.236 12 S 0.086 5.914 13 C -0.207 4.207 14 C -0.143 4.143 15 C -0.120 4.120 16 C -0.149 4.149 17 C -0.125 4.125 18 C -0.178 4.178 19 C 0.053 3.947 20 C -0.169 4.169 21 C -0.149 4.149 22 C -0.151 4.151 23 C -0.167 4.167 24 H 0.059 0.941 25 H 0.050 0.950 26 H 0.088 0.912 27 H 0.082 0.918 28 H 0.095 0.905 29 H 0.149 0.851 30 H 0.175 0.825 31 H 0.174 0.826 32 H 0.162 0.838 33 H 0.131 0.869 34 H 0.072 0.928 35 H 0.069 0.931 36 H 0.079 0.921 37 H 0.096 0.904 38 H 0.089 0.911 39 H 0.092 0.908 40 H 0.065 0.935 41 H 0.073 0.927 42 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 4.319 -9.133 10.103 14.287 hybrid contribution 1.370 1.121 -0.233 1.786 sum 5.690 -8.012 9.869 13.927 Atomic orbital electron populations 1.70155 1.06602 1.26373 1.52324 1.25740 0.95439 1.01091 1.00505 0.85751 0.78183 0.80785 0.78259 1.20024 1.22139 1.20891 1.18958 0.93471 0.86270 1.38983 0.92524 1.44053 1.51879 1.04260 1.29879 1.20439 0.90818 1.01541 0.83381 1.24345 1.00504 1.03439 0.95288 1.85444 1.17556 1.89224 0.99218 1.22002 0.96799 1.04550 0.97317 1.21026 1.00828 1.01926 0.90493 1.21456 0.93707 0.97757 0.99109 1.21561 0.95811 1.00119 0.97396 1.21373 1.00388 0.98332 0.92437 1.21371 0.92632 1.03435 1.00328 1.21348 0.94739 0.87063 0.91557 1.22744 0.97275 0.99374 0.97480 1.22400 0.99670 0.98919 0.93884 1.22213 0.95613 0.99061 0.98177 1.22440 0.97465 1.00291 0.96544 0.94097 0.94958 0.91169 0.91771 0.90495 0.85059 0.82506 0.82638 0.83813 0.86881 0.92766 0.93109 0.92077 0.90377 0.91086 0.90843 0.93532 0.92697 0.93982 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -52.49 11.48 21.65 0.25 -52.25 16 2 C -0.03 -1.62 4.96 84.86 0.42 -1.20 16 3 Si 0.94 44.32 29.61 68.60 2.03 46.35 16 4 H -0.27 -12.54 7.11 99.48 0.71 -11.83 16 5 H -0.30 -14.07 7.11 99.48 0.71 -13.36 16 6 H -0.28 -13.15 7.11 99.48 0.71 -12.44 16 7 C -0.25 -12.84 7.75 84.03 0.65 -12.19 16 8 H 0.06 2.98 6.94 -2.91 -0.02 2.96 16 9 N -0.58 -27.57 2.38 -674.02 -1.60 -29.17 16 10 C 0.17 7.76 5.29 86.38 0.46 8.21 16 11 C -0.08 -3.41 4.66 71.98 0.34 -3.08 16 12 S -0.16 -5.83 21.92 -56.49 -1.24 -7.07 16 13 C -0.09 -2.99 6.11 22.62 0.14 -2.85 16 14 C -0.12 -3.14 9.79 22.41 0.22 -2.92 16 15 C -0.10 -2.04 10.04 22.25 0.22 -1.82 16 16 C -0.13 -2.48 10.04 22.30 0.22 -2.25 16 17 C -0.11 -2.46 10.04 22.25 0.22 -2.24 16 18 C -0.15 -4.62 9.36 22.41 0.21 -4.41 16 19 C 0.16 6.39 3.42 45.72 0.16 6.54 16 20 C -0.13 -4.45 6.43 31.69 0.20 -4.24 16 21 C -0.11 -3.13 6.91 31.91 0.22 -2.91 16 22 C -0.11 -3.63 6.83 31.67 0.22 -3.41 16 23 C -0.13 -5.02 6.25 31.32 0.20 -4.83 16 24 H 0.25 14.13 8.32 -92.71 -0.77 13.36 16 25 H 0.03 1.47 7.90 -2.39 -0.02 1.45 16 26 H 0.07 3.80 5.55 -2.38 -0.01 3.79 16 27 H 0.06 2.79 7.75 -2.39 -0.02 2.77 16 28 H 0.08 2.90 7.75 -2.39 -0.02 2.88 16 29 H 0.13 3.18 8.06 -2.91 -0.02 3.16 16 30 H 0.16 2.08 8.06 -2.91 -0.02 2.06 16 31 H 0.16 1.90 8.06 -2.91 -0.02 1.87 16 32 H 0.14 2.62 8.06 -2.91 -0.02 2.60 16 33 H 0.11 3.61 5.88 -2.91 -0.02 3.59 16 34 H 0.05 2.08 7.81 -2.39 -0.02 2.07 16 35 H 0.05 1.98 6.64 -2.39 -0.02 1.96 16 36 H 0.06 1.90 8.14 -2.38 -0.02 1.88 16 37 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 38 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 39 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 40 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 41 H 0.05 1.96 8.14 -2.39 -0.02 1.94 16 42 H 0.04 2.02 7.17 -2.38 -0.02 2.01 16 Total: -1.00 -60.33 347.39 4.51 -55.81 By element: Atomic # 1 Polarization: 18.94 SS G_CDS: 0.98 Total: 19.92 kcal Atomic # 6 Polarization: -37.69 SS G_CDS: 4.10 Total: -33.60 kcal Atomic # 7 Polarization: -80.06 SS G_CDS: -1.36 Total: -81.42 kcal Atomic # 14 Polarization: 44.32 SS G_CDS: 2.03 Total: 46.35 kcal Atomic # 16 Polarization: -5.83 SS G_CDS: -1.24 Total: -7.07 kcal Total: -60.33 4.51 -55.81 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084222365.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.272 kcal (2) G-P(sol) polarization free energy of solvation -60.327 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.945 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.514 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.813 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.459 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds