Wall clock time and date at job start Tue Mar 31 2020 06:38:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.34786 * 119.99800 * 2 1 4 4 O 1.21586 * 120.00053 * 0.02562 * 3 2 1 5 5 C 1.47577 * 119.99758 * 180.02562 * 3 2 1 6 6 C 1.39758 * 120.07296 * 180.02562 * 5 3 2 7 7 C 1.37660 * 119.92409 * 180.29974 * 6 5 3 8 8 C 1.39135 * 120.07342 * 359.46133 * 7 6 5 9 9 N 1.39439 * 119.92294 * 180.23515 * 8 7 6 10 10 C 1.34778 * 119.99803 * 33.69420 * 9 8 7 11 11 O 1.21571 * 119.99990 * 5.29233 * 10 9 8 12 12 N 1.34779 * 119.99819 * 185.29761 * 10 9 8 13 13 C 1.46503 * 119.99593 * 359.97438 * 12 10 9 14 14 C 1.46496 * 120.00212 * 179.97438 * 12 10 9 15 15 C 1.50702 * 109.47192 * 89.99685 * 14 12 10 16 16 H 1.08006 * 119.99952 * 0.02562 * 15 14 12 17 17 C 1.37871 * 120.00226 * 180.02562 * 15 14 12 18 18 N 1.31515 * 119.99787 * 359.97438 * 17 15 14 19 19 Si 1.86796 * 120.00140 * 180.02562 * 17 15 14 20 20 H 1.48498 * 109.47248 * 0.02562 * 19 17 15 21 21 H 1.48500 * 109.47179 * 119.99824 * 19 17 15 22 22 H 1.48495 * 109.47395 * 239.99695 * 19 17 15 23 23 C 1.39129 * 120.15126 * 0.51218 * 8 7 6 24 24 C 1.37668 * 120.07409 * 359.77166 * 23 8 7 25 25 H 1.09001 * 109.47720 * 59.99629 * 1 2 3 26 26 H 1.08996 * 109.46978 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.46881 * 300.00075 * 1 2 3 28 28 H 0.96998 * 120.00255 * 180.02562 * 2 1 3 29 29 H 1.08005 * 120.03704 * 0.02562 * 6 5 3 30 30 H 1.08005 * 119.96229 * 179.69733 * 7 6 5 31 31 H 0.96996 * 119.99509 * 213.68433 * 9 8 7 32 32 H 1.08996 * 109.47590 * 90.00433 * 13 12 10 33 33 H 1.09006 * 109.46593 * 210.00491 * 13 12 10 34 34 H 1.09002 * 109.47671 * 329.99846 * 13 12 10 35 35 H 1.08997 * 109.47240 * 209.99935 * 14 12 10 36 36 H 1.09000 * 109.47015 * 330.00120 * 14 12 10 37 37 H 0.97005 * 119.99888 * 180.02562 * 18 17 15 38 38 H 1.08006 * 119.96885 * 179.74237 * 23 8 7 39 39 H 1.07996 * 120.03765 * 179.97438 * 24 23 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1673 0.0000 4 8 1.5309 2.2202 0.0005 5 6 3.6146 1.1673 -0.0006 6 6 4.3150 2.3767 0.0000 7 6 5.6915 2.3732 -0.0068 8 6 6.3857 1.1673 -0.0029 9 7 7.7801 1.1674 -0.0048 10 6 8.4548 2.1412 0.6379 11 8 7.8516 2.9641 1.2990 12 7 9.7981 2.2028 0.5475 13 6 10.5248 1.2108 -0.2489 14 6 10.5315 3.2615 1.2455 15 6 10.8981 2.7904 2.6292 16 1 10.6137 1.8010 2.9558 17 6 11.5967 3.6223 3.4782 18 7 11.9435 4.8268 3.0803 19 14 12.0518 3.0380 5.1931 20 1 11.5508 1.6546 5.3939 21 1 13.5287 3.0561 5.3465 22 1 11.4383 3.9385 6.2020 23 6 5.6917 -0.0385 -0.0028 24 6 4.3150 -0.0422 -0.0019 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 1.9500 -0.8400 -0.0004 29 1 3.7767 3.3131 0.0012 30 1 6.2334 3.3075 -0.0113 31 1 8.2644 0.4665 -0.4685 32 1 10.6218 1.5681 -1.2740 33 1 11.5161 1.0579 0.1779 34 1 9.9774 0.2682 -0.2429 35 1 11.4387 3.5014 0.6911 36 1 9.9046 4.1503 1.3186 37 1 12.4353 5.4120 3.6775 38 1 6.2335 -0.9728 -0.0040 39 1 3.7769 -0.9785 -0.0023 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000085552101.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:38:10 Heat of formation + Delta-G solvation = -24.201378 kcal Electronic energy + Delta-G solvation = -22323.058490 eV Core-core repulsion = 18845.312736 eV Total energy + Delta-G solvation = -3477.745755 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.137 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.56289 -39.75649 -38.04048 -35.10230 -34.83344 -34.47077 -32.60118 -30.99569 -30.09788 -27.85033 -26.87459 -25.84022 -23.82872 -22.70964 -22.40469 -20.62698 -19.52822 -18.41624 -17.83037 -16.95912 -16.57875 -16.15038 -15.35420 -15.22559 -14.98978 -14.83641 -14.33258 -14.20301 -13.78527 -13.50639 -13.35616 -13.15143 -12.89090 -12.61522 -12.48798 -12.30797 -12.21751 -11.95258 -11.26051 -11.22117 -10.93885 -10.63841 -10.22892 -10.17278 -10.09688 -9.65925 -9.44595 -9.36868 -8.96047 -8.47237 -8.09489 -7.69288 -6.08015 -4.12924 0.85122 1.40706 2.78738 3.02890 3.06391 3.27938 3.36037 3.39947 3.65619 4.00207 4.32423 4.45813 4.63582 4.70601 4.88745 4.99528 5.23723 5.26345 5.31058 5.38333 5.45235 5.52530 5.60233 5.76921 5.94609 6.04284 6.10645 6.13896 6.30673 6.39430 6.60534 6.72513 7.07960 7.26677 7.28148 7.40810 7.56780 7.89023 8.08031 8.17666 8.44549 8.87179 9.11057 9.52569 11.00003 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.025471 B = 0.003065 C = 0.002948 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1099.027144 B = 9134.535377 C = 9495.572619 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.089 3.911 2 N -0.737 5.737 3 C 0.563 3.437 4 O -0.541 6.541 5 C -0.175 4.175 6 C -0.033 4.033 7 C -0.133 4.133 8 C 0.216 3.784 9 N -0.695 5.695 10 C 0.695 3.305 11 O -0.562 6.562 12 N -0.610 5.610 13 C 0.083 3.917 14 C 0.258 3.742 15 C -0.528 4.528 16 H 0.057 0.943 17 C 0.061 3.939 18 N -0.894 5.894 19 Si 0.899 3.101 20 H -0.274 1.274 21 H -0.283 1.283 22 H -0.282 1.282 23 C -0.169 4.169 24 C -0.063 4.063 25 H 0.059 0.941 26 H 0.074 0.926 27 H 0.060 0.940 28 H 0.401 0.599 29 H 0.137 0.863 30 H 0.146 0.854 31 H 0.404 0.596 32 H 0.047 0.953 33 H 0.080 0.920 34 H 0.050 0.950 35 H 0.036 0.964 36 H 0.046 0.954 37 H 0.263 0.737 38 H 0.129 0.871 39 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.275 -14.595 -10.556 22.983 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 N -0.389 5.389 3 C 0.352 3.648 4 O -0.419 6.419 5 C -0.179 4.179 6 C -0.053 4.053 7 C -0.154 4.154 8 C 0.118 3.882 9 N -0.344 5.344 10 C 0.397 3.603 11 O -0.437 6.437 12 N -0.345 5.345 13 C -0.061 4.061 14 C 0.139 3.861 15 C -0.567 4.567 16 H 0.076 0.924 17 C -0.141 4.141 18 N -0.533 5.533 19 Si 0.727 3.273 20 H -0.199 1.199 21 H -0.210 1.210 22 H -0.208 1.208 23 C -0.190 4.190 24 C -0.082 4.082 25 H 0.078 0.922 26 H 0.093 0.907 27 H 0.078 0.922 28 H 0.235 0.765 29 H 0.154 0.846 30 H 0.164 0.836 31 H 0.241 0.759 32 H 0.066 0.934 33 H 0.099 0.901 34 H 0.068 0.932 35 H 0.054 0.946 36 H 0.064 0.936 37 H 0.073 0.927 38 H 0.147 0.853 39 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -14.914 -13.001 -9.994 22.166 hybrid contribution 0.907 -1.231 0.829 1.739 sum -14.007 -14.232 -9.165 21.971 Atomic orbital electron populations 1.21522 0.79513 1.02085 1.02427 1.45711 1.07712 1.08739 1.76787 1.18307 0.87453 0.83490 0.75507 1.90771 1.70119 1.31199 1.49788 1.19708 0.92104 0.94613 1.11510 1.21124 0.93257 0.97562 0.93316 1.21290 0.93668 0.98503 1.01900 1.17796 0.82495 0.93862 0.94041 1.43042 1.04282 1.30359 1.56684 1.15941 0.82601 0.81610 0.80170 1.90930 1.67206 1.41469 1.44139 1.47548 1.03414 1.32149 1.51371 1.21617 0.98631 0.90795 0.95104 1.19297 0.90893 0.84904 0.90995 1.21468 1.35445 1.01064 0.98698 0.92446 1.24930 0.95767 0.94752 0.98645 1.69938 1.39260 1.07490 1.36603 0.86430 0.77876 0.78854 0.84176 1.19854 1.20952 1.20813 1.20737 0.94118 0.96654 1.07462 1.20896 0.93597 0.96536 0.97184 0.92203 0.90725 0.92177 0.76471 0.84561 0.83624 0.75893 0.93439 0.90144 0.93184 0.94590 0.93553 0.92693 0.85275 0.85786 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.63 10.70 59.85 0.64 1.27 16 2 N -0.74 -6.44 5.66 -68.13 -0.39 -6.83 16 3 C 0.56 7.28 7.76 -12.45 -0.10 7.19 16 4 O -0.54 -8.99 16.34 5.29 0.09 -8.91 16 5 C -0.18 -2.23 5.88 -104.95 -0.62 -2.85 16 6 C -0.03 -0.48 9.58 -39.22 -0.38 -0.86 16 7 C -0.13 -2.13 8.62 -39.46 -0.34 -2.47 16 8 C 0.22 3.16 6.27 -83.74 -0.53 2.64 16 9 N -0.69 -10.52 5.20 -14.22 -0.07 -10.60 16 10 C 0.70 14.25 8.00 -86.92 -0.70 13.56 16 11 O -0.56 -13.98 13.61 5.30 0.07 -13.91 16 12 N -0.61 -12.48 2.86 -188.74 -0.54 -13.02 16 13 C 0.08 1.20 10.25 59.85 0.61 1.82 16 14 C 0.26 6.60 5.16 -5.19 -0.03 6.57 16 15 C -0.53 -14.76 9.39 -34.44 -0.32 -15.08 16 16 H 0.06 1.62 7.81 -52.48 -0.41 1.21 16 17 C 0.06 1.73 5.46 -17.82 -0.10 1.64 16 18 N -0.89 -26.30 13.29 55.43 0.74 -25.57 16 19 Si 0.90 21.76 29.54 -169.99 -5.02 16.74 16 20 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 21 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 22 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 23 C -0.17 -1.89 9.94 -39.46 -0.39 -2.28 16 24 C -0.06 -0.64 9.53 -39.22 -0.37 -1.01 16 25 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 26 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 27 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 28 H 0.40 2.28 6.85 -40.82 -0.28 2.00 16 29 H 0.14 1.99 7.64 -52.48 -0.40 1.59 16 30 H 0.15 2.65 6.42 -52.48 -0.34 2.31 16 31 H 0.40 4.62 6.51 -40.82 -0.27 4.36 16 32 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 33 H 0.08 1.21 8.07 -51.93 -0.42 0.79 16 34 H 0.05 0.56 6.29 -51.93 -0.33 0.23 16 35 H 0.04 0.92 8.07 -51.93 -0.42 0.50 16 36 H 0.05 1.34 7.42 -51.93 -0.39 0.95 16 37 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 38 H 0.13 1.09 8.06 -52.48 -0.42 0.67 16 39 H 0.12 0.77 6.39 -52.49 -0.34 0.43 16 LS Contribution 334.77 15.07 5.04 5.04 Total: -1.00 -36.15 334.77 -7.52 -43.66 By element: Atomic # 1 Polarization: 8.08 SS G_CDS: -4.83 Total: 3.26 kcal Atomic # 6 Polarization: 12.74 SS G_CDS: -2.61 Total: 10.13 kcal Atomic # 7 Polarization: -55.75 SS G_CDS: -0.26 Total: -56.01 kcal Atomic # 8 Polarization: -22.97 SS G_CDS: 0.16 Total: -22.82 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.74 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -36.15 -7.52 -43.66 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085552101.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.462 kcal (2) G-P(sol) polarization free energy of solvation -36.147 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.684 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.517 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.664 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.201 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds