Wall clock time and date at job start Tue Mar 31 2020 06:38:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.34786 * 119.99800 * 2 1 4 4 O 1.21586 * 120.00053 * 0.02562 * 3 2 1 5 5 C 1.47577 * 119.99758 * 180.02562 * 3 2 1 6 6 C 1.39758 * 120.07296 * 180.02562 * 5 3 2 7 7 C 1.37660 * 119.92409 * 180.29974 * 6 5 3 8 8 C 1.39135 * 120.07342 * 359.46133 * 7 6 5 9 9 N 1.39439 * 119.92294 * 180.23515 * 8 7 6 10 10 C 1.34778 * 119.99803 * 33.69420 * 9 8 7 11 11 O 1.21571 * 119.99990 * 5.29233 * 10 9 8 12 12 N 1.34779 * 119.99819 * 185.29761 * 10 9 8 13 13 C 1.46503 * 119.99593 * 359.97438 * 12 10 9 14 14 C 1.46496 * 120.00212 * 179.97438 * 12 10 9 15 15 C 1.50702 * 109.47192 * 89.99685 * 14 12 10 16 16 H 1.08006 * 119.99952 * 0.02562 * 15 14 12 17 17 C 1.37871 * 120.00226 * 180.02562 * 15 14 12 18 18 N 1.31515 * 119.99787 * 359.97438 * 17 15 14 19 19 Si 1.86796 * 120.00140 * 180.02562 * 17 15 14 20 20 H 1.48498 * 109.47248 * 0.02562 * 19 17 15 21 21 H 1.48500 * 109.47179 * 119.99824 * 19 17 15 22 22 H 1.48495 * 109.47395 * 239.99695 * 19 17 15 23 23 C 1.39129 * 120.15126 * 0.51218 * 8 7 6 24 24 C 1.37668 * 120.07409 * 359.77166 * 23 8 7 25 25 H 1.09001 * 109.47720 * 59.99629 * 1 2 3 26 26 H 1.08996 * 109.46978 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.46881 * 300.00075 * 1 2 3 28 28 H 0.96998 * 120.00255 * 180.02562 * 2 1 3 29 29 H 1.08005 * 120.03704 * 0.02562 * 6 5 3 30 30 H 1.08005 * 119.96229 * 179.69733 * 7 6 5 31 31 H 0.96996 * 119.99509 * 213.68433 * 9 8 7 32 32 H 1.08996 * 109.47590 * 90.00433 * 13 12 10 33 33 H 1.09006 * 109.46593 * 210.00491 * 13 12 10 34 34 H 1.09002 * 109.47671 * 329.99846 * 13 12 10 35 35 H 1.08997 * 109.47240 * 209.99935 * 14 12 10 36 36 H 1.09000 * 109.47015 * 330.00120 * 14 12 10 37 37 H 0.97005 * 119.99888 * 180.02562 * 18 17 15 38 38 H 1.08006 * 119.96885 * 179.74237 * 23 8 7 39 39 H 1.07996 * 120.03765 * 179.97438 * 24 23 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1673 0.0000 4 8 1.5309 2.2202 0.0005 5 6 3.6146 1.1673 -0.0006 6 6 4.3150 2.3767 0.0000 7 6 5.6915 2.3732 -0.0068 8 6 6.3857 1.1673 -0.0029 9 7 7.7801 1.1674 -0.0048 10 6 8.4548 2.1412 0.6379 11 8 7.8516 2.9641 1.2990 12 7 9.7981 2.2028 0.5475 13 6 10.5248 1.2108 -0.2489 14 6 10.5315 3.2615 1.2455 15 6 10.8981 2.7904 2.6292 16 1 10.6137 1.8010 2.9558 17 6 11.5967 3.6223 3.4782 18 7 11.9435 4.8268 3.0803 19 14 12.0518 3.0380 5.1931 20 1 11.5508 1.6546 5.3939 21 1 13.5287 3.0561 5.3465 22 1 11.4383 3.9385 6.2020 23 6 5.6917 -0.0385 -0.0028 24 6 4.3150 -0.0422 -0.0019 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 1.9500 -0.8400 -0.0004 29 1 3.7767 3.3131 0.0012 30 1 6.2334 3.3075 -0.0113 31 1 8.2644 0.4665 -0.4685 32 1 10.6218 1.5681 -1.2740 33 1 11.5161 1.0579 0.1779 34 1 9.9774 0.2682 -0.2429 35 1 11.4387 3.5014 0.6911 36 1 9.9046 4.1503 1.3186 37 1 12.4353 5.4120 3.6775 38 1 6.2335 -0.9728 -0.0040 39 1 3.7769 -0.9785 -0.0023 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000085552101.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:38:09 Heat of formation + Delta-G solvation = -51.299441 kcal Electronic energy + Delta-G solvation = -22324.233550 eV Core-core repulsion = 18845.312736 eV Total energy + Delta-G solvation = -3478.920815 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.137 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.83328 -40.92184 -39.22901 -36.73877 -35.91841 -35.69771 -34.63252 -32.02005 -31.28823 -29.61706 -27.77937 -27.23972 -25.39090 -23.98430 -23.63417 -21.68256 -20.93081 -19.49459 -19.06345 -18.68547 -18.29831 -17.14174 -16.85636 -16.60941 -16.24379 -15.94607 -15.80137 -15.50346 -14.90094 -14.81651 -14.54723 -14.24020 -14.11165 -13.95036 -13.67979 -13.50766 -13.45102 -13.13070 -13.05677 -12.82081 -12.54685 -12.28401 -12.20299 -11.72763 -11.45519 -11.21938 -10.99906 -10.64967 -10.19089 -10.00587 -9.58971 -9.06320 -8.22447 -6.37168 -0.21547 0.39894 1.36404 1.39320 1.50135 1.61977 1.76025 2.19882 2.25226 2.38978 2.90042 3.00999 3.08106 3.78351 3.84533 3.94517 4.26523 4.31849 4.37480 4.51201 4.53747 4.64929 4.65258 4.81340 4.95106 4.97208 4.99604 5.11956 5.18815 5.28022 5.31351 5.39931 5.48243 5.53575 5.76304 5.94023 6.04029 6.05175 6.53282 6.71780 6.99899 7.20562 7.29864 7.57334 8.84424 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.025471 B = 0.003065 C = 0.002948 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1099.027144 B = 9134.535377 C = 9495.572619 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.716 5.716 3 C 0.558 3.442 4 O -0.589 6.589 5 C -0.176 4.176 6 C -0.051 4.051 7 C -0.156 4.156 8 C 0.192 3.808 9 N -0.672 5.672 10 C 0.691 3.309 11 O -0.618 6.618 12 N -0.618 5.618 13 C 0.076 3.924 14 C 0.274 3.726 15 C -0.541 4.541 16 H 0.053 0.947 17 C 0.007 3.993 18 N -0.928 5.928 19 Si 0.968 3.032 20 H -0.267 1.267 21 H -0.268 1.268 22 H -0.284 1.284 23 C -0.148 4.148 24 C -0.043 4.043 25 H 0.051 0.949 26 H 0.118 0.882 27 H 0.047 0.953 28 H 0.419 0.581 29 H 0.120 0.880 30 H 0.108 0.892 31 H 0.424 0.576 32 H 0.072 0.928 33 H 0.074 0.926 34 H 0.091 0.909 35 H 0.032 0.968 36 H -0.001 1.001 37 H 0.267 0.733 38 H 0.173 0.827 39 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.872 -19.409 -10.759 26.714 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.368 5.368 3 C 0.347 3.653 4 O -0.471 6.471 5 C -0.181 4.181 6 C -0.071 4.071 7 C -0.177 4.177 8 C 0.094 3.906 9 N -0.322 5.322 10 C 0.393 3.607 11 O -0.498 6.498 12 N -0.352 5.352 13 C -0.066 4.066 14 C 0.152 3.848 15 C -0.579 4.579 16 H 0.072 0.928 17 C -0.192 4.192 18 N -0.568 5.568 19 Si 0.792 3.208 20 H -0.191 1.191 21 H -0.193 1.193 22 H -0.210 1.210 23 C -0.168 4.168 24 C -0.061 4.061 25 H 0.070 0.930 26 H 0.136 0.864 27 H 0.066 0.934 28 H 0.258 0.742 29 H 0.138 0.862 30 H 0.126 0.874 31 H 0.266 0.734 32 H 0.091 0.909 33 H 0.093 0.907 34 H 0.109 0.891 35 H 0.049 0.951 36 H 0.017 0.983 37 H 0.076 0.924 38 H 0.190 0.810 39 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges -15.514 -17.939 -10.260 25.841 hybrid contribution 0.965 0.218 0.813 1.281 sum -14.549 -17.721 -9.447 24.799 Atomic orbital electron populations 1.21726 0.78234 1.04616 1.01479 1.45593 1.08554 1.08141 1.74507 1.18411 0.87505 0.84033 0.75360 1.90754 1.70883 1.33198 1.52262 1.19853 0.92398 0.94887 1.10923 1.21022 0.92834 0.98382 0.94829 1.21047 0.94213 0.98177 1.04237 1.18054 0.82052 0.94696 0.95749 1.42586 1.04517 1.29288 1.55856 1.16132 0.82525 0.81983 0.80100 1.90896 1.68378 1.43827 1.46665 1.47392 1.03773 1.32365 1.51697 1.21946 0.98325 0.91086 0.95238 1.18735 0.89997 0.85043 0.91026 1.21731 1.35372 1.00924 0.99904 0.92843 1.25849 0.95690 0.94825 1.02851 1.70054 1.39940 1.08644 1.38194 0.85364 0.78250 0.78392 0.78764 1.19074 1.19308 1.21038 1.21160 0.94509 0.96504 1.04675 1.21415 0.93341 0.97270 0.94117 0.93022 0.86391 0.93388 0.74240 0.86242 0.87411 0.73431 0.90941 0.90689 0.89073 0.95050 0.98298 0.92398 0.80976 0.80455 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.95 10.70 127.77 1.37 2.32 16 2 N -0.72 -10.13 5.66 -487.72 -2.76 -12.89 16 3 C 0.56 13.74 7.76 86.71 0.67 14.42 16 4 O -0.59 -20.06 16.34 -3.99 -0.07 -20.12 16 5 C -0.18 -4.26 5.88 -20.08 -0.12 -4.38 16 6 C -0.05 -1.58 9.58 22.50 0.22 -1.36 16 7 C -0.16 -5.31 8.62 22.35 0.19 -5.12 16 8 C 0.19 5.40 6.27 38.36 0.24 5.64 16 9 N -0.67 -19.50 5.20 -317.18 -1.65 -21.15 16 10 C 0.69 29.03 8.00 179.05 1.43 30.46 16 11 O -0.62 -32.80 13.61 -3.94 -0.05 -32.85 16 12 N -0.62 -25.64 2.86 -869.32 -2.48 -28.12 16 13 C 0.08 2.06 10.25 127.77 1.31 3.37 16 14 C 0.27 14.63 5.16 85.63 0.44 15.07 16 15 C -0.54 -30.94 9.39 25.60 0.24 -30.70 16 16 H 0.05 3.03 7.81 -2.91 -0.02 3.01 16 17 C 0.01 0.39 5.46 84.65 0.46 0.85 16 18 N -0.93 -56.15 13.29 21.45 0.28 -55.87 16 19 Si 0.97 44.91 29.54 68.60 2.03 46.93 16 20 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 21 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 22 H -0.28 -13.22 7.11 99.48 0.71 -12.51 16 23 C -0.15 -2.67 9.94 22.35 0.22 -2.45 16 24 C -0.04 -0.67 9.53 22.50 0.21 -0.46 16 25 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 26 H 0.12 0.35 8.14 -2.39 -0.02 0.33 16 27 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 28 H 0.42 2.54 6.85 -92.71 -0.63 1.91 16 29 H 0.12 3.95 7.64 -2.91 -0.02 3.93 16 30 H 0.11 4.44 6.42 -2.91 -0.02 4.42 16 31 H 0.42 8.31 6.51 -92.71 -0.60 7.70 16 32 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 33 H 0.07 2.14 8.07 -2.38 -0.02 2.12 16 34 H 0.09 1.69 6.29 -2.39 -0.02 1.68 16 35 H 0.03 1.68 8.07 -2.39 -0.02 1.66 16 36 H 0.00 -0.07 7.42 -2.39 -0.02 -0.09 16 37 H 0.27 15.12 8.31 -92.70 -0.77 14.35 16 38 H 0.17 1.71 8.06 -2.91 -0.02 1.68 16 39 H 0.18 0.90 6.39 -2.91 -0.02 0.89 16 Total: -1.00 -86.66 334.77 2.05 -84.61 By element: Atomic # 1 Polarization: 11.95 SS G_CDS: -0.14 Total: 11.81 kcal Atomic # 6 Polarization: 20.77 SS G_CDS: 6.90 Total: 27.66 kcal Atomic # 7 Polarization: -111.42 SS G_CDS: -6.61 Total: -118.03 kcal Atomic # 8 Polarization: -52.86 SS G_CDS: -0.12 Total: -52.98 kcal Atomic # 14 Polarization: 44.91 SS G_CDS: 2.03 Total: 46.93 kcal Total: -86.66 2.05 -84.61 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085552101.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.308 kcal (2) G-P(sol) polarization free energy of solvation -86.658 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.351 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.051 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.607 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.299 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds