Wall clock time and date at job start Tue Mar 31 2020 06:58:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86793 * 120.00328 * 2 1 4 4 H 1.48495 * 109.47150 * 269.99911 * 3 2 1 5 5 H 1.48501 * 109.47375 * 30.00317 * 3 2 1 6 6 H 1.48503 * 109.47347 * 150.00021 * 3 2 1 7 7 C 1.37883 * 119.99450 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99796 * 180.02562 * 7 2 1 9 9 C 1.50695 * 120.00250 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.47213 * 174.99204 * 9 7 2 11 11 H 1.08992 * 109.47237 * 55.38766 * 10 9 7 12 12 N 1.46902 * 109.46780 * 295.38630 * 10 9 7 13 13 C 1.46899 * 110.99719 * 149.36458 * 12 10 9 14 14 C 1.52584 * 109.22603 * 207.84186 * 13 12 10 15 15 C 1.53103 * 109.95740 * 169.04343 * 14 13 12 16 16 S 1.81745 * 108.83944 * 63.02224 * 15 14 13 17 17 C 1.81747 * 102.22406 * 306.73655 * 16 15 14 18 18 C 1.52575 * 109.19485 * 86.62398 * 13 12 10 19 19 C 1.50704 * 109.47141 * 175.39005 * 10 9 7 20 20 C 1.38230 * 120.00124 * 79.72333 * 19 10 9 21 21 C 1.38233 * 120.00036 * 179.78658 * 20 19 10 22 22 C 1.38240 * 119.99686 * 0.44425 * 21 20 19 23 23 C 1.38230 * 119.99895 * 359.81080 * 22 21 20 24 24 C 1.38231 * 119.99512 * 260.00082 * 19 10 9 25 25 H 0.97006 * 119.99315 * 359.97438 * 1 2 3 26 26 H 1.09001 * 109.47105 * 54.99139 * 9 7 2 27 27 H 1.09002 * 109.47219 * 294.98972 * 9 7 2 28 28 H 1.00900 * 110.99929 * 273.31559 * 12 10 9 29 29 H 1.09000 * 109.22226 * 327.24129 * 13 12 10 30 30 H 1.09004 * 109.38897 * 48.89494 * 14 13 12 31 31 H 1.08996 * 109.38919 * 289.19675 * 14 13 12 32 32 H 1.09004 * 109.57382 * 303.21810 * 15 14 13 33 33 H 1.08993 * 109.67908 * 182.89481 * 15 14 13 34 34 H 1.08997 * 109.57804 * 173.06916 * 17 16 15 35 35 H 1.08999 * 109.57497 * 293.45805 * 17 16 15 36 36 H 1.08994 * 109.39175 * 311.12482 * 18 13 12 37 37 H 1.08999 * 109.39170 * 70.92602 * 18 13 12 38 38 H 1.08007 * 119.99957 * 359.97438 * 20 19 10 39 39 H 1.08003 * 120.00006 * 180.27306 * 21 20 19 40 40 H 1.07998 * 119.99545 * 179.83153 * 22 21 20 41 41 H 1.08006 * 119.99625 * 179.97438 * 23 22 21 42 42 H 1.07992 * 120.00403 * 359.97438 * 24 19 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4967 2.0463 -1.4000 5 1 1.4468 2.6526 0.7001 6 1 3.5468 1.4400 0.7000 7 6 2.0044 -1.1942 -0.0005 8 1 3.0845 -1.1942 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 6 2.2402 -3.6594 -0.1271 11 1 2.9824 -3.5924 0.6682 12 7 2.9124 -3.5896 -1.4314 13 6 4.2737 -4.1359 -1.3520 14 6 5.1468 -3.4652 -2.4084 15 6 6.6182 -3.8138 -2.1685 16 16 6.8347 -5.6083 -2.3588 17 6 5.5764 -6.2699 -1.2266 18 6 4.2223 -5.6448 -1.5725 19 6 1.4988 -4.9665 -0.0135 20 6 0.8141 -5.4698 -1.1037 21 6 0.1376 -6.6709 -1.0008 22 6 0.1384 -7.3642 0.1952 23 6 0.8187 -6.8583 1.2869 24 6 1.4987 -5.6593 1.1827 25 1 -0.4849 0.8402 0.0004 26 1 0.5583 -2.5188 -0.8420 27 1 0.6936 -2.5970 0.9311 28 1 2.3738 -4.0625 -2.1416 29 1 4.6853 -3.9315 -0.3636 30 1 5.0171 -2.3844 -2.3520 31 1 4.8491 -3.8128 -3.3977 32 1 6.9041 -3.5164 -1.1596 33 1 7.2421 -3.2917 -2.8938 34 1 5.5179 -7.3526 -1.3380 35 1 5.8420 -6.0204 -0.1993 36 1 3.4507 -6.0775 -0.9358 37 1 3.9868 -5.8501 -2.6168 38 1 0.8101 -4.9260 -2.0369 39 1 -0.3937 -7.0663 -1.8539 40 1 -0.3924 -8.3013 0.2764 41 1 0.8189 -7.3998 2.2215 42 1 2.0303 -5.2641 2.0357 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000090665532.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:58:21 Heat of formation + Delta-G solvation = 12.067773 kcal Electronic energy + Delta-G solvation = -21500.041797 eV Core-core repulsion = 18570.162005 eV Total energy + Delta-G solvation = -2929.879792 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 291.135 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.53696 -37.57030 -34.65254 -32.45445 -31.43995 -30.74727 -30.19938 -28.67301 -25.56091 -24.00627 -22.97087 -22.40656 -21.88251 -20.42432 -19.63771 -17.18427 -16.62708 -16.08905 -15.46779 -14.92057 -14.66343 -14.57867 -14.41079 -13.93949 -13.70849 -13.30932 -13.13258 -12.95585 -12.83079 -12.55395 -12.40304 -12.29609 -12.05536 -11.48316 -11.21996 -11.05569 -10.98399 -10.71783 -10.61309 -10.46270 -10.35878 -10.18900 -9.72210 -9.65249 -9.04159 -8.67666 -8.29026 -8.24092 -7.79331 -7.66676 -5.91070 -3.89438 1.64469 1.64987 1.79305 2.53522 3.36977 3.43151 3.45608 4.05547 4.46403 4.53433 4.74639 4.91066 5.05833 5.11559 5.14185 5.17453 5.23372 5.27046 5.40201 5.44362 5.46967 5.63412 5.67741 5.71197 5.77599 5.82811 5.99102 6.02771 6.06292 6.25537 6.29985 6.35553 6.43760 6.70927 6.72757 6.79245 6.92743 7.26942 7.46344 7.62460 7.93478 7.97378 8.09771 8.51979 9.14379 9.71594 11.20752 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.010150 B = 0.006619 C = 0.004276 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2758.046866 B = 4229.056993 C = 6546.135230 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.052 3.948 3 Si 0.890 3.110 4 H -0.282 1.282 5 H -0.290 1.290 6 H -0.276 1.276 7 C -0.488 4.488 8 H 0.057 0.943 9 C 0.042 3.958 10 C 0.130 3.870 11 H 0.071 0.929 12 N -0.651 5.651 13 C 0.083 3.917 14 C -0.110 4.110 15 C -0.074 4.074 16 S -0.286 6.286 17 C -0.071 4.071 18 C -0.153 4.153 19 C -0.087 4.087 20 C -0.119 4.119 21 C -0.118 4.118 22 C -0.137 4.137 23 C -0.120 4.120 24 C -0.119 4.119 25 H 0.258 0.742 26 H 0.023 0.977 27 H 0.015 0.985 28 H 0.334 0.666 29 H 0.073 0.927 30 H 0.090 0.910 31 H 0.070 0.930 32 H 0.082 0.918 33 H 0.102 0.898 34 H 0.098 0.902 35 H 0.080 0.920 36 H 0.078 0.922 37 H 0.072 0.928 38 H 0.121 0.879 39 H 0.116 0.884 40 H 0.114 0.886 41 H 0.115 0.885 42 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.237 -14.155 -2.164 16.045 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.148 4.148 3 Si 0.719 3.281 4 H -0.209 1.209 5 H -0.216 1.216 6 H -0.201 1.201 7 C -0.527 4.527 8 H 0.075 0.925 9 C 0.005 3.995 10 C 0.020 3.980 11 H 0.089 0.911 12 N -0.280 5.280 13 C -0.028 4.028 14 C -0.150 4.150 15 C -0.222 4.222 16 S -0.061 6.061 17 C -0.220 4.220 18 C -0.194 4.194 19 C -0.089 4.089 20 C -0.137 4.137 21 C -0.136 4.136 22 C -0.155 4.155 23 C -0.138 4.138 24 C -0.138 4.138 25 H 0.067 0.933 26 H 0.042 0.958 27 H 0.033 0.967 28 H 0.154 0.846 29 H 0.091 0.909 30 H 0.108 0.892 31 H 0.089 0.911 32 H 0.101 0.899 33 H 0.121 0.879 34 H 0.116 0.884 35 H 0.099 0.901 36 H 0.097 0.903 37 H 0.091 0.909 38 H 0.139 0.861 39 H 0.134 0.866 40 H 0.132 0.868 41 H 0.133 0.867 42 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 8.023 -13.901 -2.729 16.281 hybrid contribution -0.709 0.564 0.859 1.249 sum 7.314 -13.337 -1.870 15.325 Atomic orbital electron populations 1.69967 1.05968 1.26267 1.51984 1.24980 0.94760 0.99003 0.96013 0.86632 0.79713 0.83867 0.77931 1.20855 1.21603 1.20128 1.21044 0.92957 0.90137 1.48556 0.92502 1.19099 0.92972 0.90442 0.97025 1.21051 0.95969 0.90811 0.90147 0.91072 1.60728 1.01336 1.58885 1.07042 1.21605 0.91809 0.90236 0.99111 1.21704 0.90958 1.02838 0.99491 1.23469 1.00777 0.92603 1.05379 1.86700 1.50791 1.07471 1.61136 1.23356 0.95747 1.02773 1.00078 1.22625 0.96044 0.97850 1.02879 1.21122 0.97359 0.97053 0.93384 1.20969 0.97883 0.95892 0.98976 1.21063 0.99500 0.95454 0.97601 1.21011 1.00766 1.00134 0.93581 1.21076 0.98045 0.96418 0.98289 1.21069 1.00258 0.94995 0.97461 0.93277 0.95826 0.96732 0.84554 0.90894 0.89169 0.91116 0.89935 0.87944 0.88393 0.90104 0.90348 0.90884 0.86119 0.86597 0.86804 0.86691 0.86378 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.91 13.29 55.43 0.74 -26.17 16 2 C 0.05 1.47 5.46 -17.82 -0.10 1.38 16 3 Si 0.89 21.71 29.54 -169.99 -5.02 16.69 16 4 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 5 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 6 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 7 C -0.49 -13.27 8.83 -34.44 -0.30 -13.58 16 8 H 0.06 1.53 7.75 -52.48 -0.41 1.12 16 9 C 0.04 1.03 4.63 -27.88 -0.13 0.90 16 10 C 0.13 2.45 2.19 -68.86 -0.15 2.30 16 11 H 0.07 1.37 7.15 -51.93 -0.37 1.00 16 12 N -0.65 -11.19 5.74 -101.41 -0.58 -11.77 16 13 C 0.08 1.19 2.22 -68.14 -0.15 1.04 16 14 C -0.11 -1.48 5.34 -26.89 -0.14 -1.62 16 15 C -0.07 -0.87 6.46 37.21 0.24 -0.63 16 16 S -0.29 -3.54 22.33 -107.50 -2.40 -5.94 16 17 C -0.07 -0.81 6.46 37.21 0.24 -0.57 16 18 C -0.15 -1.92 4.97 -26.90 -0.13 -2.05 16 19 C -0.09 -1.44 3.12 -104.63 -0.33 -1.77 16 20 C -0.12 -1.82 8.69 -39.59 -0.34 -2.17 16 21 C -0.12 -1.59 10.05 -39.58 -0.40 -1.99 16 22 C -0.14 -1.75 10.05 -39.58 -0.40 -2.15 16 23 C -0.12 -1.60 10.05 -39.59 -0.40 -2.00 16 24 C -0.12 -1.82 9.67 -39.58 -0.38 -2.20 16 25 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 26 H 0.02 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.01 0.39 8.14 -51.93 -0.42 -0.03 16 28 H 0.33 5.42 5.95 -39.29 -0.23 5.19 16 29 H 0.07 1.12 7.25 -51.93 -0.38 0.74 16 30 H 0.09 1.35 8.14 -51.93 -0.42 0.93 16 31 H 0.07 0.94 8.06 -51.93 -0.42 0.52 16 32 H 0.08 0.96 8.14 -51.93 -0.42 0.53 16 33 H 0.10 1.09 8.14 -51.93 -0.42 0.66 16 34 H 0.10 1.02 8.14 -51.93 -0.42 0.60 16 35 H 0.08 0.91 8.14 -51.93 -0.42 0.48 16 36 H 0.08 1.04 5.87 -51.93 -0.30 0.74 16 37 H 0.07 0.92 8.06 -51.93 -0.42 0.50 16 38 H 0.12 1.82 6.57 -52.48 -0.35 1.47 16 39 H 0.12 1.30 8.06 -52.48 -0.42 0.88 16 40 H 0.11 1.18 8.06 -52.49 -0.42 0.75 16 41 H 0.12 1.26 8.06 -52.48 -0.42 0.84 16 42 H 0.12 1.70 8.04 -52.49 -0.42 1.28 16 LS Contribution 344.56 15.07 5.19 5.19 Total: -1.00 -29.39 344.56 -11.61 -41.00 By element: Atomic # 1 Polarization: 12.76 SS G_CDS: -6.66 Total: 6.11 kcal Atomic # 6 Polarization: -22.22 SS G_CDS: -2.88 Total: -25.10 kcal Atomic # 7 Polarization: -38.09 SS G_CDS: 0.15 Total: -37.94 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.69 kcal Atomic # 16 Polarization: -3.54 SS G_CDS: -2.40 Total: -5.94 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -29.39 -11.61 -41.00 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000090665532.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.065 kcal (2) G-P(sol) polarization free energy of solvation -29.387 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.678 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.611 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.998 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.068 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds