Wall clock time and date at job start Tue Mar 31 2020 06:58:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86793 * 120.00328 * 2 1 4 4 H 1.48495 * 109.47150 * 269.99911 * 3 2 1 5 5 H 1.48501 * 109.47375 * 30.00317 * 3 2 1 6 6 H 1.48503 * 109.47347 * 150.00021 * 3 2 1 7 7 C 1.37883 * 119.99450 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99796 * 180.02562 * 7 2 1 9 9 C 1.50695 * 120.00250 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.47213 * 174.99204 * 9 7 2 11 11 H 1.08992 * 109.47237 * 55.38766 * 10 9 7 12 12 N 1.46902 * 109.46780 * 295.38630 * 10 9 7 13 13 C 1.46899 * 110.99719 * 149.36458 * 12 10 9 14 14 C 1.52584 * 109.22603 * 207.84186 * 13 12 10 15 15 C 1.53103 * 109.95740 * 169.04343 * 14 13 12 16 16 S 1.81745 * 108.83944 * 63.02224 * 15 14 13 17 17 C 1.81747 * 102.22406 * 306.73655 * 16 15 14 18 18 C 1.52575 * 109.19485 * 86.62398 * 13 12 10 19 19 C 1.50704 * 109.47141 * 175.39005 * 10 9 7 20 20 C 1.38230 * 120.00124 * 79.72333 * 19 10 9 21 21 C 1.38233 * 120.00036 * 179.78658 * 20 19 10 22 22 C 1.38240 * 119.99686 * 0.44425 * 21 20 19 23 23 C 1.38230 * 119.99895 * 359.81080 * 22 21 20 24 24 C 1.38231 * 119.99512 * 260.00082 * 19 10 9 25 25 H 0.97006 * 119.99315 * 359.97438 * 1 2 3 26 26 H 1.09001 * 109.47105 * 54.99139 * 9 7 2 27 27 H 1.09002 * 109.47219 * 294.98972 * 9 7 2 28 28 H 1.00900 * 110.99929 * 273.31559 * 12 10 9 29 29 H 1.09000 * 109.22226 * 327.24129 * 13 12 10 30 30 H 1.09004 * 109.38897 * 48.89494 * 14 13 12 31 31 H 1.08996 * 109.38919 * 289.19675 * 14 13 12 32 32 H 1.09004 * 109.57382 * 303.21810 * 15 14 13 33 33 H 1.08993 * 109.67908 * 182.89481 * 15 14 13 34 34 H 1.08997 * 109.57804 * 173.06916 * 17 16 15 35 35 H 1.08999 * 109.57497 * 293.45805 * 17 16 15 36 36 H 1.08994 * 109.39175 * 311.12482 * 18 13 12 37 37 H 1.08999 * 109.39170 * 70.92602 * 18 13 12 38 38 H 1.08007 * 119.99957 * 359.97438 * 20 19 10 39 39 H 1.08003 * 120.00006 * 180.27306 * 21 20 19 40 40 H 1.07998 * 119.99545 * 179.83153 * 22 21 20 41 41 H 1.08006 * 119.99625 * 179.97438 * 23 22 21 42 42 H 1.07992 * 120.00403 * 359.97438 * 24 19 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4967 2.0463 -1.4000 5 1 1.4468 2.6526 0.7001 6 1 3.5468 1.4400 0.7000 7 6 2.0044 -1.1942 -0.0005 8 1 3.0845 -1.1942 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 6 2.2402 -3.6594 -0.1271 11 1 2.9824 -3.5924 0.6682 12 7 2.9124 -3.5896 -1.4314 13 6 4.2737 -4.1359 -1.3520 14 6 5.1468 -3.4652 -2.4084 15 6 6.6182 -3.8138 -2.1685 16 16 6.8347 -5.6083 -2.3588 17 6 5.5764 -6.2699 -1.2266 18 6 4.2223 -5.6448 -1.5725 19 6 1.4988 -4.9665 -0.0135 20 6 0.8141 -5.4698 -1.1037 21 6 0.1376 -6.6709 -1.0008 22 6 0.1384 -7.3642 0.1952 23 6 0.8187 -6.8583 1.2869 24 6 1.4987 -5.6593 1.1827 25 1 -0.4849 0.8402 0.0004 26 1 0.5583 -2.5188 -0.8420 27 1 0.6936 -2.5970 0.9311 28 1 2.3738 -4.0625 -2.1416 29 1 4.6853 -3.9315 -0.3636 30 1 5.0171 -2.3844 -2.3520 31 1 4.8491 -3.8128 -3.3977 32 1 6.9041 -3.5164 -1.1596 33 1 7.2421 -3.2917 -2.8938 34 1 5.5179 -7.3526 -1.3380 35 1 5.8420 -6.0204 -0.1993 36 1 3.4507 -6.0775 -0.9358 37 1 3.9868 -5.8501 -2.6168 38 1 0.8101 -4.9260 -2.0369 39 1 -0.3937 -7.0663 -1.8539 40 1 -0.3924 -8.3013 0.2764 41 1 0.8189 -7.3998 2.2215 42 1 2.0303 -5.2641 2.0357 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000090665532.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:58:21 Heat of formation + Delta-G solvation = -2.983007 kcal Electronic energy + Delta-G solvation = -21500.694447 eV Core-core repulsion = 18570.162005 eV Total energy + Delta-G solvation = -2930.532443 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 291.135 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.76099 -38.71333 -36.13679 -34.40933 -32.45381 -31.88024 -31.36109 -30.42592 -27.02898 -25.50032 -24.01642 -23.74541 -23.22847 -21.60149 -21.04564 -18.64903 -17.90401 -17.60283 -16.72584 -16.51421 -16.12586 -15.70475 -15.60201 -15.14786 -14.75957 -14.47243 -14.42188 -14.21767 -14.00323 -13.89653 -13.79400 -13.70816 -13.41258 -12.90516 -12.75777 -12.51719 -12.39664 -12.29209 -12.13726 -11.80166 -11.70204 -11.62461 -11.31578 -11.10474 -10.67972 -10.48958 -9.78322 -9.48830 -9.11950 -8.67325 -8.09447 -6.14740 0.51089 0.53793 0.83990 1.41770 1.42860 1.52716 1.57369 2.46845 2.92957 3.17766 3.28858 3.68288 3.87991 3.96834 4.02356 4.05618 4.10916 4.19844 4.26422 4.32171 4.42175 4.49377 4.54675 4.64203 4.69706 4.75632 4.78982 4.93573 4.97982 5.03510 5.16277 5.19158 5.21386 5.30709 5.49220 5.60339 5.62314 5.64875 5.73295 5.88795 6.16633 6.30997 6.43256 6.65617 6.98231 7.50601 9.02549 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.010150 B = 0.006619 C = 0.004276 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2758.046866 B = 4229.056993 C = 6546.135230 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.940 5.940 2 C -0.005 4.005 3 Si 0.956 3.044 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.265 1.265 7 C -0.495 4.495 8 H 0.057 0.943 9 C 0.051 3.949 10 C 0.148 3.852 11 H 0.062 0.938 12 N -0.667 5.667 13 C 0.088 3.912 14 C -0.105 4.105 15 C -0.068 4.068 16 S -0.295 6.295 17 C -0.065 4.065 18 C -0.140 4.140 19 C -0.106 4.106 20 C -0.131 4.131 21 C -0.119 4.119 22 C -0.131 4.131 23 C -0.119 4.119 24 C -0.134 4.134 25 H 0.258 0.742 26 H -0.007 1.007 27 H -0.017 1.017 28 H 0.338 0.662 29 H 0.061 0.939 30 H 0.072 0.928 31 H 0.072 0.928 32 H 0.084 0.916 33 H 0.117 0.883 34 H 0.114 0.886 35 H 0.084 0.916 36 H 0.073 0.927 37 H 0.074 0.926 38 H 0.115 0.885 39 H 0.141 0.859 40 H 0.147 0.853 41 H 0.143 0.857 42 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.207 -15.856 -2.278 17.999 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.201 4.201 3 Si 0.782 3.218 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.190 1.190 7 C -0.533 4.533 8 H 0.076 0.924 9 C 0.014 3.986 10 C 0.038 3.962 11 H 0.080 0.920 12 N -0.297 5.297 13 C -0.023 4.023 14 C -0.144 4.144 15 C -0.216 4.216 16 S -0.070 6.070 17 C -0.214 4.214 18 C -0.180 4.180 19 C -0.108 4.108 20 C -0.150 4.150 21 C -0.137 4.137 22 C -0.149 4.149 23 C -0.137 4.137 24 C -0.153 4.153 25 H 0.067 0.933 26 H 0.011 0.989 27 H 0.001 0.999 28 H 0.159 0.841 29 H 0.080 0.920 30 H 0.090 0.910 31 H 0.091 0.909 32 H 0.103 0.897 33 H 0.135 0.865 34 H 0.132 0.868 35 H 0.102 0.898 36 H 0.091 0.909 37 H 0.092 0.908 38 H 0.133 0.867 39 H 0.159 0.841 40 H 0.165 0.835 41 H 0.161 0.839 42 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 9.016 -15.617 -2.846 18.256 hybrid contribution -1.057 1.027 0.900 1.727 sum 7.959 -14.590 -1.946 16.733 Atomic orbital electron populations 1.70107 1.07616 1.27093 1.53380 1.25840 0.95576 1.02783 0.95855 0.85575 0.78678 0.79392 0.78106 1.20300 1.21390 1.18978 1.21395 0.93109 0.91355 1.47474 0.92447 1.18888 0.93309 0.92430 0.93991 1.20492 0.94590 0.90265 0.90808 0.91976 1.60582 1.02641 1.60120 1.06318 1.21577 0.90061 0.91740 0.98874 1.21624 0.92059 1.01539 0.99212 1.23429 0.99568 0.92591 1.06027 1.86758 1.51130 1.07652 1.61452 1.23358 0.94499 1.03551 0.99981 1.22431 0.96678 0.96120 1.02776 1.20847 0.98731 0.96450 0.94745 1.21025 0.98546 0.96963 0.98447 1.21378 0.98802 0.94526 0.98998 1.21437 0.99738 1.00940 0.92740 1.21403 0.96969 0.95539 0.99767 1.21207 1.01069 0.96072 0.96903 0.93327 0.98898 0.99854 0.84112 0.92045 0.90977 0.90896 0.89699 0.86488 0.86819 0.89772 0.90872 0.90764 0.86750 0.84121 0.83493 0.83939 0.86385 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.88 13.29 21.45 0.28 -57.59 16 2 C 0.00 -0.26 5.46 84.66 0.46 0.20 16 3 Si 0.96 45.20 29.54 68.60 2.03 47.22 16 4 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 5 H -0.29 -13.44 7.11 99.48 0.71 -12.73 16 6 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 7 C -0.49 -27.77 8.83 25.60 0.23 -27.54 16 8 H 0.06 3.15 7.75 -2.91 -0.02 3.12 16 9 C 0.05 2.67 4.63 29.85 0.14 2.80 16 10 C 0.15 5.84 2.19 44.17 0.10 5.94 16 11 H 0.06 2.51 7.15 -2.39 -0.02 2.49 16 12 N -0.67 -23.60 5.74 -474.74 -2.73 -26.33 16 13 C 0.09 2.51 2.22 44.64 0.10 2.61 16 14 C -0.10 -2.77 5.34 30.49 0.16 -2.60 16 15 C -0.07 -1.51 6.46 72.02 0.46 -1.04 16 16 S -0.30 -6.78 22.33 -56.49 -1.26 -8.04 16 17 C -0.07 -1.37 6.46 72.02 0.46 -0.91 16 18 C -0.14 -3.35 4.97 30.49 0.15 -3.19 16 19 C -0.11 -3.56 3.12 -19.87 -0.06 -3.62 16 20 C -0.13 -4.01 8.69 22.27 0.19 -3.82 16 21 C -0.12 -2.97 10.05 22.27 0.22 -2.74 16 22 C -0.13 -2.93 10.05 22.27 0.22 -2.71 16 23 C -0.12 -2.89 10.05 22.27 0.22 -2.67 16 24 C -0.13 -4.02 9.67 22.27 0.22 -3.80 16 25 H 0.26 15.08 8.31 -92.70 -0.77 14.31 16 26 H -0.01 -0.43 8.14 -2.39 -0.02 -0.45 16 27 H -0.02 -0.96 8.14 -2.39 -0.02 -0.98 16 28 H 0.34 11.31 5.95 -89.69 -0.53 10.78 16 29 H 0.06 1.90 7.25 -2.39 -0.02 1.88 16 30 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 31 H 0.07 1.88 8.06 -2.39 -0.02 1.86 16 32 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 33 H 0.12 2.28 8.14 -2.39 -0.02 2.26 16 34 H 0.11 2.08 8.14 -2.39 -0.02 2.06 16 35 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 36 H 0.07 1.88 5.87 -2.39 -0.01 1.86 16 37 H 0.07 1.77 8.06 -2.39 -0.02 1.76 16 38 H 0.11 3.54 6.57 -2.91 -0.02 3.52 16 39 H 0.14 2.75 8.06 -2.91 -0.02 2.73 16 40 H 0.15 2.35 8.06 -2.91 -0.02 2.32 16 41 H 0.14 2.64 8.06 -2.91 -0.02 2.62 16 42 H 0.12 3.43 8.04 -2.91 -0.02 3.40 16 Total: -1.00 -64.71 344.56 2.06 -62.64 By element: Atomic # 1 Polarization: 24.73 SS G_CDS: 0.46 Total: 25.19 kcal Atomic # 6 Polarization: -46.38 SS G_CDS: 3.28 Total: -43.10 kcal Atomic # 7 Polarization: -81.48 SS G_CDS: -2.44 Total: -83.92 kcal Atomic # 14 Polarization: 45.20 SS G_CDS: 2.03 Total: 47.22 kcal Atomic # 16 Polarization: -6.78 SS G_CDS: -1.26 Total: -8.04 kcal Total: -64.71 2.06 -62.64 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000090665532.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.659 kcal (2) G-P(sol) polarization free energy of solvation -64.707 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.048 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.065 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.642 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.983 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds