Wall clock time and date at job start Tue Mar 31 2020 06:06:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46502 * 109.47482 * 2 1 4 4 C 1.46499 * 119.99658 * 90.00117 * 3 2 1 5 5 C 1.50701 * 109.46992 * 90.00121 * 4 3 2 6 6 H 1.07998 * 120.00129 * 0.02562 * 5 4 3 7 7 C 1.37880 * 119.99861 * 179.97438 * 5 4 3 8 8 N 1.31512 * 119.99594 * 180.02562 * 7 5 4 9 9 Si 1.86797 * 119.99875 * 0.02562 * 7 5 4 10 10 H 1.48504 * 109.47061 * 90.00257 * 9 7 5 11 11 H 1.48497 * 109.46906 * 209.99430 * 9 7 5 12 12 H 1.48498 * 109.47403 * 329.99876 * 9 7 5 13 13 C 1.34775 * 120.00005 * 270.00252 * 3 2 1 14 14 O 1.21285 * 119.99996 * 179.97438 * 13 3 2 15 15 C 1.50698 * 120.00318 * 0.02562 * 13 3 2 16 16 H 1.09005 * 115.54912 * 34.27158 * 15 13 3 17 17 C 1.53001 * 117.49848 * 248.60899 * 15 13 3 18 18 C 1.52997 * 117.50265 * 179.97438 * 15 13 3 19 19 H 1.08998 * 117.50233 * 214.97721 * 18 15 13 20 20 C 1.50707 * 117.49546 * 359.97438 * 18 15 13 21 21 C 1.38237 * 119.97266 * 59.72842 * 20 18 15 22 22 C 1.38200 * 120.02430 * 179.72141 * 21 20 18 23 23 C 1.38455 * 119.97350 * 0.52941 * 22 21 20 24 24 F 1.35099 * 120.02823 * 179.72169 * 23 22 21 25 25 C 1.38458 * 119.95047 * 359.74537 * 23 22 21 26 26 C 1.38201 * 119.97087 * 0.02562 * 25 23 22 27 27 H 1.09005 * 109.47362 * 59.99236 * 1 2 3 28 28 H 1.08993 * 109.47491 * 179.97438 * 1 2 3 29 29 H 1.09005 * 109.46883 * 300.00131 * 1 2 3 30 30 H 1.08998 * 109.46784 * 240.00274 * 2 1 3 31 31 H 1.08994 * 109.46982 * 120.00586 * 2 1 3 32 32 H 1.09002 * 109.47391 * 330.00112 * 4 3 2 33 33 H 1.09001 * 109.46813 * 210.00168 * 4 3 2 34 34 H 0.97002 * 119.99739 * 180.02562 * 8 7 5 35 35 H 1.09003 * 117.49719 * 359.97438 * 17 15 13 36 36 H 1.08995 * 117.50307 * 144.99565 * 17 15 13 37 37 H 1.08004 * 119.99164 * 359.97438 * 21 20 18 38 38 H 1.08000 * 120.01391 * 180.24859 * 22 21 20 39 39 H 1.08000 * 120.02052 * 179.97438 * 25 23 22 40 40 H 1.08004 * 119.98912 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2626 2.0717 1.2688 5 6 3.6859 1.8348 1.7037 6 1 4.3430 1.2307 1.0957 7 6 4.1496 2.3902 2.8775 8 7 5.3918 2.1838 3.2568 9 14 3.0133 3.4356 3.9288 10 1 2.3085 2.5696 4.9078 11 1 3.8107 4.4563 4.6551 12 1 2.0175 4.1121 3.0594 13 6 2.2430 2.0165 -1.1672 14 8 2.6469 3.1602 -1.1672 15 6 1.9912 1.3064 -2.4723 16 1 1.1558 0.6062 -2.4730 17 6 3.2074 0.9559 -3.3319 18 6 2.2647 2.0817 -3.7627 19 1 1.6092 1.8917 -4.6125 20 6 2.7647 3.4973 -3.6312 21 6 3.9516 3.7519 -2.9698 22 6 4.4141 5.0490 -2.8536 23 6 3.6826 6.0948 -3.3904 24 9 4.1308 7.3638 -3.2725 25 6 2.4910 5.8392 -4.0476 26 6 2.0330 4.5408 -4.1667 27 1 -0.3634 0.5140 -0.8899 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 1.8932 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8899 32 1 1.5818 1.6876 2.0284 33 1 2.0957 3.1410 1.1384 34 1 5.7179 2.5742 4.0827 35 1 4.1896 1.2394 -2.9536 36 1 3.1722 0.0253 -3.8982 37 1 4.5199 2.9364 -2.5473 38 1 5.3434 5.2473 -2.3404 39 1 1.9193 6.6542 -4.4664 40 1 1.1034 4.3411 -4.6790 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000103208757.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:49 Heat of formation + Delta-G solvation = -19.058707 kcal Electronic energy + Delta-G solvation = -23524.065903 eV Core-core repulsion = 20026.623190 eV Total energy + Delta-G solvation = -3497.442713 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.138 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -48.56187 -40.20853 -38.34575 -36.17357 -35.22128 -32.70033 -30.79610 -30.35485 -29.92600 -27.90134 -24.38491 -23.65041 -22.94641 -22.56299 -21.55307 -20.33061 -18.30002 -17.47271 -16.92362 -16.90908 -15.84775 -15.71076 -15.25409 -14.88975 -14.76426 -14.22878 -14.14380 -13.56633 -13.47961 -13.26115 -13.04223 -12.84746 -12.52060 -12.40926 -12.14053 -11.97964 -11.70179 -11.53510 -11.29904 -10.97133 -10.80269 -10.70868 -10.57700 -10.36748 -10.30652 -10.09328 -9.55458 -9.18378 -8.60632 -8.55422 -7.81812 -7.69319 -6.10482 -4.08903 1.45661 1.67031 3.06765 3.25646 3.34408 3.39117 3.70742 3.90523 4.21283 4.38696 4.61361 4.65728 4.85207 4.95141 5.05650 5.12183 5.22092 5.23553 5.26903 5.34637 5.54943 5.55827 5.67726 5.72023 5.74528 5.86871 6.00131 6.08532 6.13877 6.24529 6.35571 6.39543 6.47499 6.64440 6.67846 6.88307 6.98355 7.26521 7.35593 7.60237 8.26479 8.45553 8.91391 9.00145 9.50518 11.02817 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.012602 B = 0.006157 C = 0.004675 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2221.258881 B = 4546.619439 C = 5987.272235 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.106 3.894 3 N -0.588 5.588 4 C 0.217 3.783 5 C -0.526 4.526 6 H 0.074 0.926 7 C 0.073 3.927 8 N -0.897 5.897 9 Si 0.873 3.127 10 H -0.276 1.276 11 H -0.284 1.284 12 H -0.264 1.264 13 C 0.531 3.469 14 O -0.523 6.523 15 C -0.177 4.177 16 H 0.122 0.878 17 C -0.150 4.150 18 C -0.087 4.087 19 H 0.118 0.882 20 C -0.055 4.055 21 C -0.012 4.012 22 C -0.157 4.157 23 C 0.093 3.907 24 F -0.149 7.149 25 C -0.169 4.169 26 C -0.088 4.088 27 H 0.051 0.949 28 H 0.061 0.939 29 H 0.058 0.942 30 H 0.069 0.931 31 H 0.083 0.917 32 H 0.023 0.977 33 H 0.040 0.960 34 H 0.264 0.736 35 H 0.105 0.895 36 H 0.106 0.894 37 H 0.125 0.875 38 H 0.129 0.871 39 H 0.126 0.874 40 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.611 -2.623 -15.006 17.499 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.018 4.018 3 N -0.319 5.319 4 C 0.097 3.903 5 C -0.565 4.565 6 H 0.092 0.908 7 C -0.129 4.129 8 N -0.536 5.536 9 Si 0.699 3.301 10 H -0.201 1.201 11 H -0.210 1.210 12 H -0.189 1.189 13 C 0.318 3.682 14 O -0.400 6.400 15 C -0.198 4.198 16 H 0.140 0.860 17 C -0.187 4.187 18 C -0.105 4.105 19 H 0.136 0.864 20 C -0.055 4.055 21 C -0.030 4.030 22 C -0.176 4.176 23 C 0.074 3.926 24 F -0.127 7.127 25 C -0.188 4.188 26 C -0.106 4.106 27 H 0.070 0.930 28 H 0.080 0.920 29 H 0.077 0.923 30 H 0.088 0.912 31 H 0.101 0.899 32 H 0.041 0.959 33 H 0.058 0.942 34 H 0.074 0.926 35 H 0.123 0.877 36 H 0.124 0.876 37 H 0.143 0.857 38 H 0.147 0.853 39 H 0.144 0.856 40 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -8.248 -1.919 -14.805 17.056 hybrid contribution -0.524 0.605 1.016 1.293 sum -8.772 -1.315 -13.789 16.396 Atomic orbital electron populations 1.22245 0.96906 1.01492 1.02213 1.21428 0.93250 0.84021 1.03069 1.47901 1.63857 1.13259 1.06865 1.19633 0.97061 0.93618 0.80025 1.21305 0.95338 1.32738 1.07099 0.90813 1.24840 0.94978 0.95740 0.97365 1.69891 1.15148 1.45019 1.23530 0.86895 0.81372 0.80934 0.80852 1.20137 1.20955 1.18866 1.19439 0.78292 0.86432 0.84050 1.90722 1.45346 1.17651 1.86253 1.22468 1.02275 1.03829 0.91266 0.85976 1.23124 0.95039 0.99180 1.01360 1.21006 1.02630 0.89971 0.96905 0.86409 1.18854 0.94936 0.92899 0.98845 1.20651 0.94351 0.95924 0.92084 1.20995 1.01609 0.92318 1.02657 1.17679 0.95025 0.78634 1.01298 1.91448 1.89224 1.37559 1.94516 1.20843 0.96310 0.97871 1.03753 1.20559 0.98980 0.91250 0.99788 0.92956 0.92047 0.92314 0.91222 0.89893 0.95884 0.94172 0.92585 0.87699 0.87582 0.85679 0.85285 0.85628 0.85911 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.08 10.12 37.16 0.38 -1.71 16 2 C 0.11 1.60 5.76 -4.04 -0.02 1.58 16 3 N -0.59 -11.62 2.46 -175.06 -0.43 -12.05 16 4 C 0.22 5.22 4.23 -5.19 -0.02 5.20 16 5 C -0.53 -14.84 9.94 -34.44 -0.34 -15.18 16 6 H 0.07 2.27 8.06 -52.49 -0.42 1.85 16 7 C 0.07 2.12 5.47 -17.82 -0.10 2.02 16 8 N -0.90 -27.48 13.96 55.43 0.77 -26.71 16 9 Si 0.87 21.63 27.47 -169.99 -4.67 16.96 16 10 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 11 H -0.28 -7.05 7.11 56.52 0.40 -6.65 16 12 H -0.26 -6.45 6.54 56.52 0.37 -6.08 16 13 C 0.53 10.17 7.31 -10.99 -0.08 10.09 16 14 O -0.52 -11.82 11.26 5.55 0.06 -11.76 16 15 C -0.18 -2.42 4.80 -91.77 -0.44 -2.86 16 16 H 0.12 1.36 6.48 -51.93 -0.34 1.02 16 17 C -0.15 -1.77 9.58 -26.72 -0.26 -2.02 16 18 C -0.09 -1.07 6.04 -91.76 -0.55 -1.62 16 19 H 0.12 1.10 8.14 -51.93 -0.42 0.68 16 20 C -0.06 -0.83 4.38 -104.62 -0.46 -1.29 16 21 C -0.01 -0.20 6.15 -39.60 -0.24 -0.45 16 22 C -0.16 -2.72 10.03 -39.52 -0.40 -3.12 16 23 C 0.09 1.55 7.30 -39.42 -0.29 1.26 16 24 F -0.15 -2.50 17.27 2.25 0.04 -2.47 16 25 C -0.17 -2.47 10.03 -39.51 -0.40 -2.86 16 26 C -0.09 -1.21 9.73 -39.59 -0.39 -1.60 16 27 H 0.05 0.61 7.45 -51.93 -0.39 0.22 16 28 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 29 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.07 0.88 6.64 -51.93 -0.34 0.54 16 31 H 0.08 1.32 8.07 -51.93 -0.42 0.91 16 32 H 0.02 0.53 7.50 -51.93 -0.39 0.14 16 33 H 0.04 1.06 6.48 -51.93 -0.34 0.72 16 34 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 35 H 0.10 1.41 6.18 -51.93 -0.32 1.09 16 36 H 0.11 0.93 8.14 -51.93 -0.42 0.51 16 37 H 0.13 2.19 5.76 -52.48 -0.30 1.89 16 38 H 0.13 2.15 8.06 -52.49 -0.42 1.73 16 39 H 0.13 1.53 8.06 -52.49 -0.42 1.11 16 40 H 0.12 1.33 8.06 -52.48 -0.42 0.91 16 LS Contribution 331.70 15.07 5.00 5.00 Total: -1.00 -33.13 331.70 -8.22 -41.35 By element: Atomic # 1 Polarization: 7.61 SS G_CDS: -5.39 Total: 2.22 kcal Atomic # 6 Polarization: -8.95 SS G_CDS: -3.61 Total: -12.55 kcal Atomic # 7 Polarization: -39.10 SS G_CDS: 0.34 Total: -38.76 kcal Atomic # 8 Polarization: -11.82 SS G_CDS: 0.06 Total: -11.76 kcal Atomic # 9 Polarization: -2.50 SS G_CDS: 0.04 Total: -2.47 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -4.67 Total: 16.96 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -33.13 -8.22 -41.35 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103208757.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.289 kcal (2) G-P(sol) polarization free energy of solvation -33.130 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.840 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.218 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.348 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds