Wall clock time and date at job start Tue Mar 31 2020 06:06:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46502 * 109.47482 * 2 1 4 4 C 1.46499 * 119.99658 * 90.00117 * 3 2 1 5 5 C 1.50701 * 109.46992 * 90.00121 * 4 3 2 6 6 H 1.07998 * 120.00129 * 0.02562 * 5 4 3 7 7 C 1.37880 * 119.99861 * 179.97438 * 5 4 3 8 8 N 1.31512 * 119.99594 * 180.02562 * 7 5 4 9 9 Si 1.86797 * 119.99875 * 0.02562 * 7 5 4 10 10 H 1.48504 * 109.47061 * 90.00257 * 9 7 5 11 11 H 1.48497 * 109.46906 * 209.99430 * 9 7 5 12 12 H 1.48498 * 109.47403 * 329.99876 * 9 7 5 13 13 C 1.34775 * 120.00005 * 270.00252 * 3 2 1 14 14 O 1.21285 * 119.99996 * 179.97438 * 13 3 2 15 15 C 1.50698 * 120.00318 * 0.02562 * 13 3 2 16 16 H 1.09005 * 115.54912 * 34.27158 * 15 13 3 17 17 C 1.53001 * 117.49848 * 248.60899 * 15 13 3 18 18 C 1.52997 * 117.50265 * 179.97438 * 15 13 3 19 19 H 1.08998 * 117.50233 * 214.97721 * 18 15 13 20 20 C 1.50707 * 117.49546 * 359.97438 * 18 15 13 21 21 C 1.38237 * 119.97266 * 59.72842 * 20 18 15 22 22 C 1.38200 * 120.02430 * 179.72141 * 21 20 18 23 23 C 1.38455 * 119.97350 * 0.52941 * 22 21 20 24 24 F 1.35099 * 120.02823 * 179.72169 * 23 22 21 25 25 C 1.38458 * 119.95047 * 359.74537 * 23 22 21 26 26 C 1.38201 * 119.97087 * 0.02562 * 25 23 22 27 27 H 1.09005 * 109.47362 * 59.99236 * 1 2 3 28 28 H 1.08993 * 109.47491 * 179.97438 * 1 2 3 29 29 H 1.09005 * 109.46883 * 300.00131 * 1 2 3 30 30 H 1.08998 * 109.46784 * 240.00274 * 2 1 3 31 31 H 1.08994 * 109.46982 * 120.00586 * 2 1 3 32 32 H 1.09002 * 109.47391 * 330.00112 * 4 3 2 33 33 H 1.09001 * 109.46813 * 210.00168 * 4 3 2 34 34 H 0.97002 * 119.99739 * 180.02562 * 8 7 5 35 35 H 1.09003 * 117.49719 * 359.97438 * 17 15 13 36 36 H 1.08995 * 117.50307 * 144.99565 * 17 15 13 37 37 H 1.08004 * 119.99164 * 359.97438 * 21 20 18 38 38 H 1.08000 * 120.01391 * 180.24859 * 22 21 20 39 39 H 1.08000 * 120.02052 * 179.97438 * 25 23 22 40 40 H 1.08004 * 119.98912 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2626 2.0717 1.2688 5 6 3.6859 1.8348 1.7037 6 1 4.3430 1.2307 1.0957 7 6 4.1496 2.3902 2.8775 8 7 5.3918 2.1838 3.2568 9 14 3.0133 3.4356 3.9288 10 1 2.3085 2.5696 4.9078 11 1 3.8107 4.4563 4.6551 12 1 2.0175 4.1121 3.0594 13 6 2.2430 2.0165 -1.1672 14 8 2.6469 3.1602 -1.1672 15 6 1.9912 1.3064 -2.4723 16 1 1.1558 0.6062 -2.4730 17 6 3.2074 0.9559 -3.3319 18 6 2.2647 2.0817 -3.7627 19 1 1.6092 1.8917 -4.6125 20 6 2.7647 3.4973 -3.6312 21 6 3.9516 3.7519 -2.9698 22 6 4.4141 5.0490 -2.8536 23 6 3.6826 6.0948 -3.3904 24 9 4.1308 7.3638 -3.2725 25 6 2.4910 5.8392 -4.0476 26 6 2.0330 4.5408 -4.1667 27 1 -0.3634 0.5140 -0.8899 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 1.8932 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8899 32 1 1.5818 1.6876 2.0284 33 1 2.0957 3.1410 1.1384 34 1 5.7179 2.5742 4.0827 35 1 4.1896 1.2394 -2.9536 36 1 3.1722 0.0253 -3.8982 37 1 4.5199 2.9364 -2.5473 38 1 5.3434 5.2473 -2.3404 39 1 1.9193 6.6542 -4.4664 40 1 1.1034 4.3411 -4.6790 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000103208757.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:48 Heat of formation + Delta-G solvation = -38.463728 kcal Electronic energy + Delta-G solvation = -23524.907368 eV Core-core repulsion = 20026.623190 eV Total energy + Delta-G solvation = -3498.284178 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.138 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -49.86475 -41.47140 -39.66584 -37.39276 -36.65926 -34.83235 -32.00785 -31.85337 -31.11823 -29.62144 -25.91764 -24.77197 -24.31115 -23.75932 -23.03308 -21.47834 -19.65063 -19.09714 -18.75050 -18.19953 -17.20374 -17.09991 -16.56300 -16.39639 -16.18154 -15.74104 -15.38132 -15.07762 -14.65585 -14.57635 -14.40734 -14.26194 -14.08695 -13.72056 -13.53302 -13.34393 -13.13359 -13.04060 -12.58472 -12.38993 -12.33073 -12.10444 -11.88074 -11.84486 -11.76968 -11.46090 -11.32066 -10.84470 -10.58618 -9.81560 -9.31601 -9.05362 -8.36602 -6.40178 0.23827 0.46093 1.26651 1.31763 1.41768 1.75242 2.27398 2.32908 2.66579 2.97988 3.14649 3.39282 3.56722 3.80436 3.87118 3.97685 4.00622 4.06132 4.20348 4.34755 4.42514 4.46280 4.59824 4.65418 4.75848 4.86680 4.88167 5.00789 5.03266 5.04215 5.07714 5.10876 5.20852 5.28186 5.41179 5.42322 5.47098 5.70727 5.71463 6.07292 6.23847 6.60974 6.80914 7.21379 7.54049 8.80231 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.012602 B = 0.006157 C = 0.004675 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2221.258881 B = 4546.619439 C = 5987.272235 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.100 3.900 3 N -0.599 5.599 4 C 0.229 3.771 5 C -0.528 4.528 6 H 0.030 0.970 7 C 0.013 3.987 8 N -0.945 5.945 9 Si 0.942 3.058 10 H -0.251 1.251 11 H -0.284 1.284 12 H -0.260 1.260 13 C 0.516 3.484 14 O -0.568 6.568 15 C -0.180 4.180 16 H 0.161 0.839 17 C -0.142 4.142 18 C -0.078 4.078 19 H 0.166 0.834 20 C -0.061 4.061 21 C -0.030 4.030 22 C -0.185 4.185 23 C 0.069 3.931 24 F -0.156 7.156 25 C -0.165 4.165 26 C -0.082 4.082 27 H 0.064 0.936 28 H 0.093 0.907 29 H 0.041 0.959 30 H 0.098 0.902 31 H 0.065 0.935 32 H 0.040 0.960 33 H 0.015 0.985 34 H 0.267 0.733 35 H 0.075 0.925 36 H 0.149 0.851 37 H 0.105 0.895 38 H 0.114 0.886 39 H 0.154 0.846 40 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.418 -3.933 -16.976 21.397 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.023 4.023 3 N -0.330 5.330 4 C 0.106 3.894 5 C -0.567 4.567 6 H 0.048 0.952 7 C -0.185 4.185 8 N -0.585 5.585 9 Si 0.765 3.235 10 H -0.175 1.175 11 H -0.209 1.209 12 H -0.184 1.184 13 C 0.305 3.695 14 O -0.448 6.448 15 C -0.201 4.201 16 H 0.178 0.822 17 C -0.179 4.179 18 C -0.096 4.096 19 H 0.183 0.817 20 C -0.061 4.061 21 C -0.049 4.049 22 C -0.204 4.204 23 C 0.050 3.950 24 F -0.135 7.135 25 C -0.183 4.183 26 C -0.099 4.099 27 H 0.083 0.917 28 H 0.112 0.888 29 H 0.060 0.940 30 H 0.117 0.883 31 H 0.084 0.916 32 H 0.058 0.942 33 H 0.033 0.967 34 H 0.076 0.924 35 H 0.093 0.907 36 H 0.167 0.833 37 H 0.123 0.877 38 H 0.132 0.868 39 H 0.172 0.828 40 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -12.075 -3.276 -16.794 20.942 hybrid contribution 0.765 0.969 1.582 2.007 sum -11.310 -2.307 -15.212 19.096 Atomic orbital electron populations 1.22163 0.94088 1.03531 1.02030 1.21724 0.95468 0.81374 1.03702 1.48021 1.64276 1.15031 1.05656 1.19189 0.94478 0.92884 0.82825 1.21540 0.97057 1.31637 1.06464 0.95197 1.25786 0.96592 0.97159 0.99007 1.70043 1.17320 1.46693 1.24436 0.85793 0.79263 0.79240 0.79177 1.17471 1.20939 1.18389 1.20521 0.76964 0.86304 0.85665 1.90714 1.47027 1.19926 1.87172 1.22446 1.04505 1.04824 0.88287 0.82159 1.23257 0.93096 1.00936 1.00584 1.21288 1.02971 0.88034 0.97291 0.81661 1.19257 0.93851 0.95330 0.97666 1.20628 0.95849 0.95015 0.93383 1.21061 1.01927 0.93441 1.03992 1.17914 0.96263 0.78135 1.02685 1.91419 1.89500 1.37804 1.94730 1.21247 0.95194 0.99465 1.02434 1.21057 0.99903 0.90244 0.98739 0.91680 0.88819 0.93962 0.88336 0.91630 0.94225 0.96693 0.92389 0.90675 0.83283 0.87717 0.86776 0.82809 0.81598 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.34 10.12 71.98 0.73 -2.61 16 2 C 0.10 2.80 5.76 86.38 0.50 3.30 16 3 N -0.60 -23.56 2.46 -826.16 -2.03 -25.59 16 4 C 0.23 11.22 4.23 85.63 0.36 11.58 16 5 C -0.53 -31.17 9.94 25.60 0.25 -30.92 16 6 H 0.03 1.96 8.06 -2.91 -0.02 1.94 16 7 C 0.01 0.75 5.47 84.66 0.46 1.21 16 8 N -0.94 -60.29 13.96 21.45 0.30 -59.99 16 9 Si 0.94 45.52 27.47 68.60 1.88 47.40 16 10 H -0.25 -11.06 7.11 99.48 0.71 -10.35 16 11 H -0.28 -13.62 7.11 99.48 0.71 -12.91 16 12 H -0.26 -12.27 6.54 99.48 0.65 -11.62 16 13 C 0.52 19.57 7.31 87.66 0.64 20.21 16 14 O -0.57 -26.50 11.26 -3.05 -0.03 -26.54 16 15 C -0.18 -4.31 4.80 -11.54 -0.06 -4.37 16 16 H 0.16 2.62 6.48 -2.38 -0.02 2.60 16 17 C -0.14 -2.94 9.58 30.60 0.29 -2.64 16 18 C -0.08 -1.61 6.04 -11.53 -0.07 -1.67 16 19 H 0.17 1.92 8.14 -2.39 -0.02 1.90 16 20 C -0.06 -1.73 4.38 -19.86 -0.09 -1.82 16 21 C -0.03 -1.09 6.15 22.26 0.14 -0.95 16 22 C -0.19 -6.95 10.03 22.31 0.22 -6.73 16 23 C 0.07 2.37 7.30 22.37 0.16 2.53 16 24 F -0.16 -5.44 17.27 44.97 0.78 -4.67 16 25 C -0.16 -4.55 10.03 22.31 0.22 -4.32 16 26 C -0.08 -2.01 9.73 22.26 0.22 -1.80 16 27 H 0.06 1.21 7.45 -2.38 -0.02 1.19 16 28 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 29 H 0.04 1.02 8.14 -2.38 -0.02 1.00 16 30 H 0.10 2.18 6.64 -2.39 -0.02 2.16 16 31 H 0.07 2.05 8.07 -2.39 -0.02 2.03 16 32 H 0.04 1.80 7.50 -2.39 -0.02 1.78 16 33 H 0.02 0.81 6.48 -2.39 -0.02 0.79 16 34 H 0.27 15.92 8.31 -92.71 -0.77 15.14 16 35 H 0.07 2.05 6.18 -2.39 -0.01 2.03 16 36 H 0.15 1.84 8.14 -2.39 -0.02 1.82 16 37 H 0.10 4.05 5.76 -2.91 -0.02 4.03 16 38 H 0.11 4.36 8.06 -2.91 -0.02 4.33 16 39 H 0.15 3.29 8.06 -2.91 -0.02 3.27 16 40 H 0.17 2.64 8.06 -2.91 -0.02 2.62 16 Total: -1.00 -79.12 331.70 5.88 -73.24 By element: Atomic # 1 Polarization: 14.16 SS G_CDS: 0.99 Total: 15.15 kcal Atomic # 6 Polarization: -23.00 SS G_CDS: 3.99 Total: -19.00 kcal Atomic # 7 Polarization: -83.86 SS G_CDS: -1.73 Total: -85.59 kcal Atomic # 8 Polarization: -26.50 SS G_CDS: -0.03 Total: -26.54 kcal Atomic # 9 Polarization: -5.44 SS G_CDS: 0.78 Total: -4.67 kcal Atomic # 14 Polarization: 45.52 SS G_CDS: 1.88 Total: 47.40 kcal Total: -79.12 5.88 -73.24 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103208757.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.775 kcal (2) G-P(sol) polarization free energy of solvation -79.116 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.342 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.878 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.238 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.464 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds