Wall clock time and date at job start Tue Mar 31 2020 06:06:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46499 * 109.47147 * 2 1 4 4 C 1.46506 * 119.99936 * 89.99619 * 3 2 1 5 5 C 1.50703 * 109.46877 * 90.00092 * 4 3 2 6 6 H 1.08005 * 119.99817 * 0.02562 * 5 4 3 7 7 C 1.37871 * 120.00081 * 179.97438 * 5 4 3 8 8 N 1.31520 * 119.99848 * 0.02562 * 7 5 4 9 9 Si 1.86798 * 120.00321 * 179.97438 * 7 5 4 10 10 H 1.48500 * 109.46855 * 90.00279 * 9 7 5 11 11 H 1.48499 * 109.47326 * 210.00609 * 9 7 5 12 12 H 1.48497 * 109.46885 * 330.00481 * 9 7 5 13 13 C 1.34773 * 120.00036 * 270.27655 * 3 2 1 14 14 O 1.21281 * 120.00220 * 179.72597 * 13 3 2 15 15 C 1.50706 * 120.00080 * 359.72107 * 13 3 2 16 16 H 1.08999 * 115.54353 * 325.67367 * 15 13 3 17 17 C 1.52995 * 117.49938 * 111.37923 * 15 13 3 18 18 C 1.52991 * 117.50148 * 180.02562 * 15 13 3 19 19 H 1.09002 * 117.49918 * 0.02562 * 18 15 13 20 20 C 1.50701 * 117.50141 * 144.99608 * 18 15 13 21 21 C 1.38246 * 119.96965 * 59.72604 * 20 18 15 22 22 C 1.38202 * 120.02231 * 179.72673 * 21 20 18 23 23 C 1.38463 * 119.97379 * 0.57318 * 22 21 20 24 24 F 1.35098 * 120.02668 * 179.68082 * 23 22 21 25 25 C 1.38461 * 119.94710 * 359.70196 * 23 22 21 26 26 C 1.38195 * 119.97557 * 0.02562 * 25 23 22 27 27 H 1.09005 * 109.47395 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.47272 * 300.00321 * 1 2 3 29 29 H 1.08997 * 109.47273 * 60.00010 * 1 2 3 30 30 H 1.08994 * 109.47531 * 239.99672 * 2 1 3 31 31 H 1.09005 * 109.46544 * 119.99607 * 2 1 3 32 32 H 1.09000 * 109.46803 * 209.99571 * 4 3 2 33 33 H 1.09000 * 109.47214 * 330.00364 * 4 3 2 34 34 H 0.96998 * 119.99944 * 179.97438 * 8 7 5 35 35 H 1.09001 * 117.50075 * 214.98329 * 17 15 13 36 36 H 1.09001 * 117.49712 * 0.02562 * 17 15 13 37 37 H 1.08003 * 119.99200 * 359.97438 * 21 20 18 38 38 H 1.08004 * 120.01159 * 180.25440 * 22 21 20 39 39 H 1.08000 * 120.00991 * 180.02562 * 25 23 22 40 40 H 1.07999 * 119.98436 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2624 2.0718 1.2688 5 6 3.6857 1.8350 1.7039 6 1 4.3428 1.2309 1.0958 7 6 4.1493 2.3905 2.8775 8 7 3.3493 3.1266 3.6176 9 14 5.9133 2.0964 3.4172 10 1 6.7855 3.1610 2.8596 11 1 5.9880 2.1213 4.9001 12 1 6.3686 0.7729 2.9208 13 6 2.2377 2.0184 -1.1671 14 8 2.6372 3.1635 -1.1672 15 6 1.9865 1.3080 -2.4723 16 1 2.2011 0.2393 -2.4746 17 6 0.8162 1.7959 -3.3284 18 6 2.2549 2.0850 -3.7626 19 1 2.6136 3.1099 -3.6676 20 6 2.7952 1.3142 -4.9395 21 6 2.0707 0.2617 -5.4671 22 6 2.5625 -0.4423 -6.5500 23 6 3.7869 -0.1007 -7.0988 24 9 4.2717 -0.7923 -8.1533 25 6 4.5143 0.9500 -6.5659 26 6 4.0179 1.6561 -5.4866 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3634 0.5139 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 1.8934 -0.5138 -0.8899 31 1 1.8933 -0.5138 0.8901 32 1 2.0955 3.1411 1.1383 33 1 1.5816 1.6877 2.0284 34 1 3.6753 3.5170 4.4435 35 1 0.2603 1.0482 -3.8942 36 1 0.2281 2.6311 -2.9479 37 1 1.1180 -0.0080 -5.0356 38 1 1.9943 -1.2619 -6.9646 39 1 5.4693 1.2176 -6.9934 40 1 4.5850 2.4760 -5.0711 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000103208759.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:51 Heat of formation + Delta-G solvation = -34.900007 kcal Electronic energy + Delta-G solvation = -22505.358461 eV Core-core repulsion = 19007.228817 eV Total energy + Delta-G solvation = -3498.129644 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.138 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -49.05345 -40.08985 -38.84415 -36.24635 -35.16923 -32.76974 -31.34783 -30.34496 -30.05767 -27.41820 -24.45312 -23.93292 -23.06530 -22.87586 -21.82826 -20.52987 -18.20470 -17.97288 -17.08387 -16.41541 -16.27823 -15.77187 -15.69756 -15.37021 -14.79398 -14.45640 -14.25488 -13.75855 -13.55411 -13.38334 -13.13806 -12.93045 -12.73091 -12.31461 -12.17316 -12.00644 -11.63402 -11.56206 -11.23803 -11.16716 -10.92550 -10.75184 -10.67856 -10.43111 -10.31843 -10.12448 -9.63956 -9.30747 -8.96997 -8.53869 -8.43551 -7.66988 -6.04842 -4.09562 0.91418 1.04089 3.06165 3.31007 3.36913 3.39031 3.41083 3.84746 4.07194 4.12159 4.42307 4.52652 4.54738 4.67818 4.84875 4.93258 5.04020 5.09589 5.24389 5.29653 5.30918 5.46240 5.56282 5.65921 5.73950 5.76528 5.84197 5.93898 5.98979 6.02928 6.08335 6.16014 6.24727 6.44440 6.50915 6.69831 7.06508 7.43382 7.54499 7.91787 8.23023 8.42221 8.89594 9.08978 9.55701 11.03218 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.018446 B = 0.003605 C = 0.003281 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1517.611228 B = 7766.176595 C = 8531.635349 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.107 3.893 3 N -0.591 5.591 4 C 0.246 3.754 5 C -0.526 4.526 6 H 0.057 0.943 7 C 0.061 3.939 8 N -0.895 5.895 9 Si 0.898 3.102 10 H -0.279 1.279 11 H -0.286 1.286 12 H -0.274 1.274 13 C 0.533 3.467 14 O -0.542 6.542 15 C -0.167 4.167 16 H 0.121 0.879 17 C -0.146 4.146 18 C -0.094 4.094 19 H 0.129 0.871 20 C -0.053 4.053 21 C -0.093 4.093 22 C -0.151 4.151 23 C 0.087 3.913 24 F -0.144 7.144 25 C -0.150 4.150 26 C -0.080 4.080 27 H 0.058 0.942 28 H 0.059 0.941 29 H 0.053 0.947 30 H 0.065 0.935 31 H 0.080 0.920 32 H 0.043 0.957 33 H 0.032 0.968 34 H 0.263 0.737 35 H 0.103 0.897 36 H 0.104 0.896 37 H 0.135 0.865 38 H 0.134 0.866 39 H 0.135 0.865 40 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.196 -8.043 -18.171 20.540 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.017 4.017 3 N -0.322 5.322 4 C 0.127 3.873 5 C -0.565 4.565 6 H 0.075 0.925 7 C -0.141 4.141 8 N -0.534 5.534 9 Si 0.725 3.275 10 H -0.205 1.205 11 H -0.211 1.211 12 H -0.199 1.199 13 C 0.319 3.681 14 O -0.420 6.420 15 C -0.188 4.188 16 H 0.139 0.861 17 C -0.184 4.184 18 C -0.112 4.112 19 H 0.147 0.853 20 C -0.053 4.053 21 C -0.111 4.111 22 C -0.170 4.170 23 C 0.068 3.932 24 F -0.122 7.122 25 C -0.169 4.169 26 C -0.098 4.098 27 H 0.077 0.923 28 H 0.078 0.922 29 H 0.072 0.928 30 H 0.083 0.917 31 H 0.099 0.901 32 H 0.061 0.939 33 H 0.050 0.950 34 H 0.073 0.927 35 H 0.121 0.879 36 H 0.122 0.878 37 H 0.152 0.848 38 H 0.152 0.848 39 H 0.153 0.847 40 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -4.969 -7.363 -17.984 20.059 hybrid contribution 1.120 -0.433 0.275 1.232 sum -3.849 -7.797 -17.709 19.729 Atomic orbital electron populations 1.22207 0.96723 1.01320 1.02377 1.21424 0.93575 0.84166 1.02531 1.48166 1.63320 1.13220 1.07494 1.19281 0.96288 0.93615 0.78079 1.21441 0.96907 1.31892 1.06269 0.92467 1.24933 0.97856 0.94928 0.96378 1.69934 1.35619 1.33478 1.14384 0.86503 0.84755 0.78652 0.77544 1.20542 1.21137 1.19923 1.19311 0.78336 0.86308 0.84100 1.90663 1.46299 1.17995 1.87044 1.22508 1.05164 1.00250 0.90906 0.86114 1.23083 0.90383 1.03504 1.01401 1.21064 0.98638 1.00231 0.91277 0.85337 1.19274 0.94538 0.95680 0.95829 1.20954 1.00124 0.94737 0.95306 1.21095 0.95395 1.02130 0.98340 1.17734 0.94379 0.93701 0.87396 1.91486 1.87973 1.78199 1.54571 1.21146 1.01096 0.96250 0.98383 1.20938 0.94926 0.99428 0.94537 0.92310 0.92189 0.92814 0.91698 0.90109 0.93913 0.94980 0.92724 0.87869 0.87753 0.84772 0.84811 0.84706 0.84564 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.20 10.24 37.16 0.38 -1.82 16 2 C 0.11 1.70 5.95 -4.04 -0.02 1.67 16 3 N -0.59 -12.34 2.46 -175.05 -0.43 -12.77 16 4 C 0.25 6.40 5.17 -5.19 -0.03 6.38 16 5 C -0.53 -14.92 9.39 -34.44 -0.32 -15.25 16 6 H 0.06 1.63 7.81 -52.48 -0.41 1.22 16 7 C 0.06 1.74 5.46 -17.82 -0.10 1.65 16 8 N -0.90 -26.57 13.29 55.43 0.74 -25.83 16 9 Si 0.90 21.88 29.54 -169.99 -5.02 16.86 16 10 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 11 H -0.29 -6.81 7.11 56.52 0.40 -6.40 16 12 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 13 C 0.53 10.88 7.46 -10.98 -0.08 10.80 16 14 O -0.54 -13.43 15.83 5.56 0.09 -13.34 16 15 C -0.17 -2.42 4.91 -91.78 -0.45 -2.87 16 16 H 0.12 1.55 6.45 -51.93 -0.33 1.21 16 17 C -0.15 -1.67 9.56 -26.71 -0.26 -1.93 16 18 C -0.09 -1.21 5.55 -91.76 -0.51 -1.72 16 19 H 0.13 1.88 7.67 -51.93 -0.40 1.48 16 20 C -0.05 -0.60 5.61 -104.62 -0.59 -1.19 16 21 C -0.09 -0.91 9.29 -39.59 -0.37 -1.27 16 22 C -0.15 -1.45 10.03 -39.51 -0.40 -1.84 16 23 C 0.09 0.94 7.30 -39.42 -0.29 0.65 16 24 F -0.14 -1.62 17.27 2.25 0.04 -1.58 16 25 C -0.15 -1.55 10.03 -39.51 -0.40 -1.95 16 26 C -0.08 -0.88 9.73 -39.59 -0.39 -1.27 16 27 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 29 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.06 0.86 6.00 -51.93 -0.31 0.55 16 31 H 0.08 1.34 8.07 -51.93 -0.42 0.92 16 32 H 0.04 1.26 7.41 -51.93 -0.38 0.87 16 33 H 0.03 0.84 8.07 -51.93 -0.42 0.42 16 34 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 35 H 0.10 0.87 6.18 -51.93 -0.32 0.55 16 36 H 0.10 1.27 8.14 -51.93 -0.42 0.85 16 37 H 0.13 1.03 6.03 -52.48 -0.32 0.72 16 38 H 0.13 1.00 8.06 -52.48 -0.42 0.58 16 39 H 0.14 1.15 8.06 -52.49 -0.42 0.73 16 40 H 0.14 1.39 8.06 -52.49 -0.42 0.97 16 LS Contribution 344.13 15.07 5.19 5.19 Total: -1.00 -32.81 344.13 -8.62 -41.43 By element: Atomic # 1 Polarization: 5.42 SS G_CDS: -5.41 Total: 0.01 kcal Atomic # 6 Polarization: -6.15 SS G_CDS: -3.81 Total: -9.96 kcal Atomic # 7 Polarization: -38.91 SS G_CDS: 0.31 Total: -38.60 kcal Atomic # 8 Polarization: -13.43 SS G_CDS: 0.09 Total: -13.34 kcal Atomic # 9 Polarization: -1.62 SS G_CDS: 0.04 Total: -1.58 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.86 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -32.81 -8.62 -41.43 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103208759.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.527 kcal (2) G-P(sol) polarization free energy of solvation -32.806 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.279 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.621 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.427 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.900 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds