Wall clock time and date at job start Tue Mar 31 2020 06:06:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46499 * 109.47147 * 2 1 4 4 C 1.46506 * 119.99936 * 89.99619 * 3 2 1 5 5 C 1.50703 * 109.46877 * 90.00092 * 4 3 2 6 6 H 1.08005 * 119.99817 * 0.02562 * 5 4 3 7 7 C 1.37871 * 120.00081 * 179.97438 * 5 4 3 8 8 N 1.31520 * 119.99848 * 0.02562 * 7 5 4 9 9 Si 1.86798 * 120.00321 * 179.97438 * 7 5 4 10 10 H 1.48500 * 109.46855 * 90.00279 * 9 7 5 11 11 H 1.48499 * 109.47326 * 210.00609 * 9 7 5 12 12 H 1.48497 * 109.46885 * 330.00481 * 9 7 5 13 13 C 1.34773 * 120.00036 * 270.27655 * 3 2 1 14 14 O 1.21281 * 120.00220 * 179.72597 * 13 3 2 15 15 C 1.50706 * 120.00080 * 359.72107 * 13 3 2 16 16 H 1.08999 * 115.54353 * 325.67367 * 15 13 3 17 17 C 1.52995 * 117.49938 * 111.37923 * 15 13 3 18 18 C 1.52991 * 117.50148 * 180.02562 * 15 13 3 19 19 H 1.09002 * 117.49918 * 0.02562 * 18 15 13 20 20 C 1.50701 * 117.50141 * 144.99608 * 18 15 13 21 21 C 1.38246 * 119.96965 * 59.72604 * 20 18 15 22 22 C 1.38202 * 120.02231 * 179.72673 * 21 20 18 23 23 C 1.38463 * 119.97379 * 0.57318 * 22 21 20 24 24 F 1.35098 * 120.02668 * 179.68082 * 23 22 21 25 25 C 1.38461 * 119.94710 * 359.70196 * 23 22 21 26 26 C 1.38195 * 119.97557 * 0.02562 * 25 23 22 27 27 H 1.09005 * 109.47395 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.47272 * 300.00321 * 1 2 3 29 29 H 1.08997 * 109.47273 * 60.00010 * 1 2 3 30 30 H 1.08994 * 109.47531 * 239.99672 * 2 1 3 31 31 H 1.09005 * 109.46544 * 119.99607 * 2 1 3 32 32 H 1.09000 * 109.46803 * 209.99571 * 4 3 2 33 33 H 1.09000 * 109.47214 * 330.00364 * 4 3 2 34 34 H 0.96998 * 119.99944 * 179.97438 * 8 7 5 35 35 H 1.09001 * 117.50075 * 214.98329 * 17 15 13 36 36 H 1.09001 * 117.49712 * 0.02562 * 17 15 13 37 37 H 1.08003 * 119.99200 * 359.97438 * 21 20 18 38 38 H 1.08004 * 120.01159 * 180.25440 * 22 21 20 39 39 H 1.08000 * 120.00991 * 180.02562 * 25 23 22 40 40 H 1.07999 * 119.98436 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2624 2.0718 1.2688 5 6 3.6857 1.8350 1.7039 6 1 4.3428 1.2309 1.0958 7 6 4.1493 2.3905 2.8775 8 7 3.3493 3.1266 3.6176 9 14 5.9133 2.0964 3.4172 10 1 6.7855 3.1610 2.8596 11 1 5.9880 2.1213 4.9001 12 1 6.3686 0.7729 2.9208 13 6 2.2377 2.0184 -1.1671 14 8 2.6372 3.1635 -1.1672 15 6 1.9865 1.3080 -2.4723 16 1 2.2011 0.2393 -2.4746 17 6 0.8162 1.7959 -3.3284 18 6 2.2549 2.0850 -3.7626 19 1 2.6136 3.1099 -3.6676 20 6 2.7952 1.3142 -4.9395 21 6 2.0707 0.2617 -5.4671 22 6 2.5625 -0.4423 -6.5500 23 6 3.7869 -0.1007 -7.0988 24 9 4.2717 -0.7923 -8.1533 25 6 4.5143 0.9500 -6.5659 26 6 4.0179 1.6561 -5.4866 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3634 0.5139 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 1.8934 -0.5138 -0.8899 31 1 1.8933 -0.5138 0.8901 32 1 2.0955 3.1411 1.1383 33 1 1.5816 1.6877 2.0284 34 1 3.6753 3.5170 4.4435 35 1 0.2603 1.0482 -3.8942 36 1 0.2281 2.6311 -2.9479 37 1 1.1180 -0.0080 -5.0356 38 1 1.9943 -1.2619 -6.9646 39 1 5.4693 1.2176 -6.9934 40 1 4.5850 2.4760 -5.0711 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000103208759.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:51 Heat of formation + Delta-G solvation = -52.937194 kcal Electronic energy + Delta-G solvation = -22506.140612 eV Core-core repulsion = 19007.228817 eV Total energy + Delta-G solvation = -3498.911795 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.138 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -49.87193 -41.28351 -40.01666 -37.44140 -36.74877 -34.87712 -32.09823 -31.63193 -31.15315 -29.27962 -26.11078 -24.81114 -24.40783 -23.80268 -23.29491 -21.46492 -19.65122 -18.85441 -18.62705 -18.22825 -17.37242 -17.05738 -16.57966 -16.55998 -16.29266 -15.93899 -15.47366 -14.93593 -14.61637 -14.48908 -14.33422 -14.24170 -13.77762 -13.65181 -13.50628 -13.25704 -13.21858 -13.07430 -12.65968 -12.50135 -12.48713 -12.18270 -12.02882 -11.82678 -11.72484 -11.53788 -11.35871 -10.66250 -10.59404 -10.04913 -9.45516 -9.38915 -8.23733 -6.38859 0.09888 0.29408 1.35205 1.38225 1.47928 1.69275 2.26476 2.39271 2.55955 3.04634 3.05762 3.30086 3.49539 3.71587 3.79993 3.85068 3.98220 4.07635 4.14705 4.31048 4.33603 4.47218 4.50213 4.62484 4.74766 4.95559 4.98955 4.99385 5.02643 5.05281 5.08597 5.14209 5.19563 5.22212 5.31992 5.43346 5.57242 5.60860 5.86167 5.93284 6.05456 6.68917 6.81366 7.27072 7.49220 8.83257 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.018446 B = 0.003605 C = 0.003281 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1517.611228 B = 7766.176595 C = 8531.635349 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.100 3.900 3 N -0.598 5.598 4 C 0.262 3.738 5 C -0.544 4.544 6 H 0.052 0.948 7 C 0.008 3.992 8 N -0.928 5.928 9 Si 0.967 3.033 10 H -0.280 1.280 11 H -0.273 1.273 12 H -0.262 1.262 13 C 0.522 3.478 14 O -0.601 6.601 15 C -0.174 4.174 16 H 0.148 0.852 17 C -0.117 4.117 18 C -0.094 4.094 19 H 0.100 0.900 20 C -0.063 4.063 21 C -0.085 4.085 22 C -0.146 4.146 23 C 0.074 3.926 24 F -0.149 7.149 25 C -0.155 4.155 26 C -0.095 4.095 27 H 0.095 0.905 28 H 0.035 0.965 29 H 0.065 0.935 30 H 0.100 0.900 31 H 0.068 0.932 32 H -0.005 1.005 33 H 0.022 0.978 34 H 0.267 0.733 35 H 0.149 0.851 36 H 0.094 0.906 37 H 0.164 0.836 38 H 0.159 0.841 39 H 0.146 0.854 40 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.814 -10.788 -19.873 23.348 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.022 4.022 3 N -0.328 5.328 4 C 0.141 3.859 5 C -0.583 4.583 6 H 0.070 0.930 7 C -0.191 4.191 8 N -0.568 5.568 9 Si 0.791 3.209 10 H -0.206 1.206 11 H -0.198 1.198 12 H -0.186 1.186 13 C 0.311 3.689 14 O -0.484 6.484 15 C -0.195 4.195 16 H 0.165 0.835 17 C -0.154 4.154 18 C -0.113 4.113 19 H 0.118 0.882 20 C -0.063 4.063 21 C -0.103 4.103 22 C -0.165 4.165 23 C 0.055 3.945 24 F -0.128 7.128 25 C -0.173 4.173 26 C -0.113 4.113 27 H 0.114 0.886 28 H 0.054 0.946 29 H 0.084 0.916 30 H 0.118 0.882 31 H 0.086 0.914 32 H 0.013 0.987 33 H 0.040 0.960 34 H 0.076 0.924 35 H 0.167 0.833 36 H 0.112 0.888 37 H 0.181 0.819 38 H 0.177 0.823 39 H 0.164 0.836 40 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -5.612 -10.156 -19.703 22.866 hybrid contribution 1.293 0.454 0.773 1.573 sum -4.319 -9.702 -18.930 21.706 Atomic orbital electron populations 1.22134 0.94258 1.03498 1.01790 1.21762 0.95587 0.81228 1.03625 1.48202 1.63484 1.15093 1.06016 1.18696 0.95255 0.91461 0.80487 1.21718 0.97909 1.32049 1.06579 0.92982 1.25862 1.02425 0.94453 0.96395 1.70052 1.37723 1.34181 1.14841 0.85425 0.79001 0.78841 0.77613 1.20648 1.19816 1.18610 1.20375 0.76795 0.85887 0.85810 1.90625 1.48824 1.20832 1.88094 1.22354 1.08516 1.00776 0.87844 0.83472 1.23276 0.89415 1.03639 0.99040 1.20954 1.00238 0.98955 0.91112 0.88164 1.19212 0.94943 0.96551 0.95570 1.21194 1.00751 0.93488 0.94847 1.21388 0.94826 1.02401 0.97840 1.17983 0.95147 0.93884 0.87516 1.91474 1.88153 1.78292 1.54860 1.21268 1.01687 0.96210 0.98165 1.21021 0.95355 0.99796 0.95119 0.88630 0.94625 0.91587 0.88182 0.91380 0.98665 0.96004 0.92372 0.83324 0.88772 0.81883 0.82297 0.83639 0.85006 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.78 10.24 71.98 0.74 -3.04 16 2 C 0.10 3.02 5.95 86.38 0.51 3.53 16 3 N -0.60 -25.49 2.46 -826.13 -2.03 -27.52 16 4 C 0.26 14.39 5.17 85.63 0.44 14.83 16 5 C -0.54 -31.90 9.39 25.60 0.24 -31.66 16 6 H 0.05 3.03 7.81 -2.91 -0.02 3.00 16 7 C 0.01 0.44 5.46 84.65 0.46 0.91 16 8 N -0.93 -56.77 13.29 21.45 0.28 -56.48 16 9 Si 0.97 45.40 29.54 68.60 2.03 47.43 16 10 H -0.28 -13.16 7.11 99.48 0.71 -12.46 16 11 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 12 H -0.26 -11.68 7.11 99.48 0.71 -10.98 16 13 C 0.52 21.77 7.46 87.66 0.65 22.42 16 14 O -0.60 -31.61 15.83 -3.03 -0.05 -31.66 16 15 C -0.17 -4.71 4.91 -11.54 -0.06 -4.77 16 16 H 0.15 3.19 6.45 -2.39 -0.02 3.17 16 17 C -0.12 -2.31 9.56 30.61 0.29 -2.02 16 18 C -0.09 -2.32 5.55 -11.53 -0.06 -2.39 16 19 H 0.10 3.07 7.67 -2.39 -0.02 3.05 16 20 C -0.06 -1.28 5.61 -19.86 -0.11 -1.39 16 21 C -0.09 -1.29 9.29 22.26 0.21 -1.09 16 22 C -0.15 -2.24 10.03 22.31 0.22 -2.02 16 23 C 0.07 1.42 7.30 22.38 0.16 1.58 16 24 F -0.15 -3.08 17.27 44.97 0.78 -2.30 16 25 C -0.15 -3.00 10.03 22.31 0.22 -2.78 16 26 C -0.09 -2.01 9.73 22.26 0.22 -1.80 16 27 H 0.09 1.60 8.14 -2.38 -0.02 1.58 16 28 H 0.03 1.01 8.14 -2.39 -0.02 0.99 16 29 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 30 H 0.10 2.31 6.00 -2.39 -0.01 2.30 16 31 H 0.07 2.22 8.07 -2.38 -0.02 2.20 16 32 H 0.00 -0.30 7.41 -2.39 -0.02 -0.32 16 33 H 0.02 1.22 8.07 -2.39 -0.02 1.20 16 34 H 0.27 15.29 8.31 -92.71 -0.77 14.52 16 35 H 0.15 1.61 6.18 -2.39 -0.01 1.60 16 36 H 0.09 2.12 8.14 -2.39 -0.02 2.10 16 37 H 0.16 1.48 6.03 -2.91 -0.02 1.46 16 38 H 0.16 1.63 8.06 -2.91 -0.02 1.60 16 39 H 0.15 2.36 8.06 -2.91 -0.02 2.34 16 40 H 0.13 2.79 8.06 -2.91 -0.02 2.77 16 Total: -1.00 -76.39 344.13 6.20 -70.19 By element: Atomic # 1 Polarization: 8.97 SS G_CDS: 1.04 Total: 10.01 kcal Atomic # 6 Polarization: -13.82 SS G_CDS: 4.14 Total: -9.68 kcal Atomic # 7 Polarization: -82.26 SS G_CDS: -1.74 Total: -84.00 kcal Atomic # 8 Polarization: -31.61 SS G_CDS: -0.05 Total: -31.66 kcal Atomic # 9 Polarization: -3.08 SS G_CDS: 0.78 Total: -2.30 kcal Atomic # 14 Polarization: 45.40 SS G_CDS: 2.03 Total: 47.43 kcal Total: -76.39 6.20 -70.19 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103208759.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.256 kcal (2) G-P(sol) polarization free energy of solvation -76.392 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.135 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.198 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.194 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.937 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds