Wall clock time and date at job start Tue Mar 31 2020 06:06:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 N 1.46497 * 109.46926 * 2 1 4 4 C 1.46493 * 120.00235 * 90.00466 * 3 2 1 5 5 C 1.50706 * 109.47128 * 269.99530 * 4 3 2 6 6 H 1.08000 * 119.99302 * 359.97438 * 5 4 3 7 7 C 1.37871 * 120.00436 * 179.72498 * 5 4 3 8 8 N 1.31515 * 119.99684 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 120.00405 * 180.02562 * 7 5 4 10 10 H 1.48497 * 109.47154 * 89.99418 * 9 7 5 11 11 H 1.48493 * 109.47010 * 209.99942 * 9 7 5 12 12 H 1.48502 * 109.46736 * 329.99638 * 9 7 5 13 13 C 1.34783 * 119.99658 * 269.99594 * 3 2 1 14 14 O 1.21284 * 119.99626 * 180.02562 * 13 3 2 15 15 C 1.50696 * 120.00310 * 0.02562 * 13 3 2 16 16 H 1.09000 * 115.54855 * 325.58001 * 15 13 3 17 17 C 1.53000 * 117.49873 * 111.25030 * 15 13 3 18 18 C 1.53005 * 117.49975 * 179.90867 * 15 13 3 19 19 H 1.08993 * 117.49309 * 145.01831 * 18 15 13 20 20 C 1.50694 * 117.49816 * 0.02562 * 18 15 13 21 21 C 1.38248 * 119.97259 * 299.71950 * 20 18 15 22 22 C 1.38202 * 120.02480 * 179.77059 * 21 20 18 23 23 C 1.38458 * 119.97314 * 0.50478 * 22 21 20 24 24 F 1.35097 * 120.02451 * 179.76842 * 23 22 21 25 25 C 1.38454 * 119.94956 * 359.74950 * 23 22 21 26 26 C 1.38204 * 119.97697 * 359.97438 * 25 23 22 27 27 H 1.08993 * 109.47111 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.46792 * 300.00225 * 1 2 3 29 29 H 1.08997 * 109.46846 * 60.00212 * 1 2 3 30 30 H 1.08998 * 109.46792 * 239.99775 * 2 1 3 31 31 H 1.08997 * 109.46846 * 119.99788 * 2 1 3 32 32 H 1.09001 * 109.47786 * 149.99803 * 4 3 2 33 33 H 1.08998 * 109.47558 * 29.99666 * 4 3 2 34 34 H 0.97004 * 120.00247 * 180.02562 * 8 7 5 35 35 H 1.09009 * 117.49336 * 214.97819 * 17 15 13 36 36 H 1.08993 * 117.50071 * 359.97438 * 17 15 13 37 37 H 1.07997 * 119.98937 * 0.02747 * 21 20 18 38 38 H 1.07999 * 120.01140 * 180.26343 * 22 21 20 39 39 H 1.08004 * 120.01616 * 179.97438 * 25 23 22 40 40 H 1.07995 * 119.99071 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2626 2.0718 1.2686 5 6 1.0068 2.7823 1.7037 6 1 0.1160 2.7254 1.0957 7 6 0.9935 3.5006 2.8805 8 7 2.0767 3.5654 3.6235 9 14 -0.5633 4.3807 3.4201 10 1 -1.3827 3.4684 4.2577 11 1 -0.2025 5.5862 4.2085 12 1 -1.3424 4.7871 2.2230 13 6 2.2430 2.0165 -1.1673 14 8 2.6477 3.1598 -1.1673 15 6 1.9914 1.3063 -2.4724 16 1 2.2026 0.2369 -2.4739 17 6 0.8232 1.7969 -3.3299 18 6 2.2635 2.0820 -3.7628 19 1 2.6533 1.5229 -4.6133 20 6 2.7631 3.4976 -3.6314 21 6 1.9948 4.4435 -2.9785 22 6 2.4540 5.7409 -2.8532 23 6 3.6795 6.0958 -3.3911 24 9 4.1274 7.3650 -3.2733 25 6 4.4458 5.1490 -4.0493 26 6 3.9871 3.8508 -4.1684 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 3.0645 2.7985 1.1384 33 1 2.5507 1.3452 2.0283 34 1 2.0673 4.0705 4.4516 35 1 0.2661 1.0503 -3.8960 36 1 0.2364 2.6331 -2.9500 37 1 1.0371 4.1674 -2.5625 38 1 1.8555 6.4786 -2.3394 39 1 5.4017 5.4248 -4.4696 40 1 4.5848 3.1120 -4.6814 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000103208763.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:56 Heat of formation + Delta-G solvation = -22.034211 kcal Electronic energy + Delta-G solvation = -23579.985652 eV Core-core repulsion = 20082.413911 eV Total energy + Delta-G solvation = -3497.571741 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.138 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -48.53973 -40.13818 -38.27205 -36.09763 -35.10894 -32.71463 -30.77669 -29.96999 -29.87345 -27.45511 -24.39386 -23.61283 -22.76973 -22.55027 -21.87661 -20.32324 -18.17984 -17.46198 -16.94340 -16.49301 -15.80097 -15.59065 -15.22534 -14.82496 -14.63458 -14.32756 -13.94234 -13.75990 -13.26244 -13.19622 -12.84291 -12.72529 -12.34944 -12.31553 -12.15329 -11.81173 -11.44726 -11.31988 -11.19244 -10.99968 -10.75182 -10.69775 -10.52633 -10.30603 -10.23592 -10.06162 -9.57786 -9.07102 -8.53102 -8.43335 -7.77021 -7.63001 -6.04330 -4.08482 1.48549 1.68978 3.14836 3.28287 3.35749 3.38672 3.79177 3.98173 4.25099 4.42978 4.64052 4.69391 4.91594 4.98069 5.07266 5.18079 5.23638 5.28712 5.30681 5.51399 5.57715 5.68781 5.73533 5.78479 5.82530 5.99042 6.10080 6.14801 6.25945 6.34070 6.37749 6.49557 6.65470 6.77204 6.90068 7.07796 7.28616 7.45096 7.57142 7.92121 8.23830 8.44578 8.90869 9.12702 9.56372 11.03789 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.013143 B = 0.005978 C = 0.004603 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2129.925917 B = 4682.910401 C = 6081.002389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.112 3.888 3 N -0.593 5.593 4 C 0.247 3.753 5 C -0.520 4.520 6 H 0.058 0.942 7 C 0.061 3.939 8 N -0.895 5.895 9 Si 0.894 3.106 10 H -0.281 1.281 11 H -0.286 1.286 12 H -0.275 1.275 13 C 0.528 3.472 14 O -0.523 6.523 15 C -0.176 4.176 16 H 0.122 0.878 17 C -0.150 4.150 18 C -0.088 4.088 19 H 0.117 0.883 20 C -0.052 4.052 21 C -0.015 4.015 22 C -0.156 4.156 23 C 0.092 3.908 24 F -0.149 7.149 25 C -0.167 4.167 26 C -0.088 4.088 27 H 0.051 0.949 28 H 0.073 0.927 29 H 0.050 0.950 30 H 0.061 0.939 31 H 0.072 0.928 32 H 0.043 0.957 33 H 0.030 0.970 34 H 0.263 0.737 35 H 0.104 0.896 36 H 0.103 0.897 37 H 0.124 0.876 38 H 0.128 0.872 39 H 0.126 0.874 40 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.515 -5.818 -15.574 16.633 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.012 4.012 3 N -0.324 5.324 4 C 0.128 3.872 5 C -0.559 4.559 6 H 0.076 0.924 7 C -0.141 4.141 8 N -0.534 5.534 9 Si 0.722 3.278 10 H -0.207 1.207 11 H -0.211 1.211 12 H -0.200 1.200 13 C 0.314 3.686 14 O -0.401 6.401 15 C -0.197 4.197 16 H 0.139 0.861 17 C -0.187 4.187 18 C -0.107 4.107 19 H 0.135 0.865 20 C -0.052 4.052 21 C -0.033 4.033 22 C -0.175 4.175 23 C 0.073 3.927 24 F -0.128 7.128 25 C -0.186 4.186 26 C -0.107 4.107 27 H 0.070 0.930 28 H 0.092 0.908 29 H 0.069 0.931 30 H 0.080 0.920 31 H 0.090 0.910 32 H 0.061 0.939 33 H 0.048 0.952 34 H 0.072 0.928 35 H 0.123 0.877 36 H 0.121 0.879 37 H 0.141 0.859 38 H 0.146 0.854 39 H 0.144 0.856 40 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -0.197 -5.086 -15.343 16.165 hybrid contribution -0.763 0.517 0.752 1.190 sum -0.960 -4.570 -14.590 15.319 Atomic orbital electron populations 1.22207 0.96327 1.00754 1.03345 1.21385 0.94590 0.83855 1.01396 1.48242 1.63379 1.13161 1.07598 1.19274 0.97506 0.92420 0.78022 1.21409 0.97420 1.31129 1.05966 0.92400 1.24930 0.96338 0.96340 0.96519 1.69929 1.27494 1.41849 1.14096 0.86555 0.83279 0.79328 0.78611 1.20691 1.21134 1.19957 1.19389 0.78748 0.86379 0.84055 1.90727 1.46019 1.17084 1.86259 1.22498 1.05669 1.00005 0.91509 0.86068 1.23096 0.90620 1.03457 1.01534 1.21013 0.98757 0.93831 0.97093 0.86478 1.18841 0.94677 0.93018 0.98648 1.20621 0.99344 0.90928 0.92382 1.20965 0.95814 0.98101 1.02575 1.17663 0.94599 0.79104 1.01338 1.91447 1.89363 1.37421 1.94531 1.20847 1.00615 0.93507 1.03634 1.20561 0.95189 0.95090 0.99812 0.93021 0.90762 0.93084 0.92031 0.90994 0.93923 0.95239 0.92771 0.87732 0.87903 0.85858 0.85418 0.85609 0.85897 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.48 10.24 37.16 0.38 -2.10 16 2 C 0.11 1.74 6.00 -4.04 -0.02 1.72 16 3 N -0.59 -12.05 2.46 -175.06 -0.43 -12.48 16 4 C 0.25 6.31 5.20 -5.19 -0.03 6.29 16 5 C -0.52 -14.30 8.92 -34.44 -0.31 -14.61 16 6 H 0.06 1.58 7.42 -52.49 -0.39 1.19 16 7 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 8 N -0.89 -26.50 13.29 55.43 0.74 -25.76 16 9 Si 0.89 21.69 29.54 -169.99 -5.02 16.67 16 10 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 11 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 12 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 13 C 0.53 10.33 7.32 -10.98 -0.08 10.24 16 14 O -0.52 -12.10 11.31 5.55 0.06 -12.04 16 15 C -0.18 -2.45 5.28 -91.77 -0.48 -2.93 16 16 H 0.12 1.39 6.44 -51.93 -0.33 1.05 16 17 C -0.15 -1.77 9.58 -26.69 -0.26 -2.02 16 18 C -0.09 -1.11 6.04 -91.73 -0.55 -1.66 16 19 H 0.12 1.12 8.14 -51.93 -0.42 0.70 16 20 C -0.05 -0.79 4.35 -104.62 -0.46 -1.24 16 21 C -0.01 -0.25 6.19 -39.59 -0.24 -0.49 16 22 C -0.16 -2.71 10.03 -39.51 -0.40 -3.10 16 23 C 0.09 1.55 7.30 -39.42 -0.29 1.26 16 24 F -0.15 -2.53 17.27 2.25 0.04 -2.49 16 25 C -0.17 -2.49 10.03 -39.51 -0.40 -2.88 16 26 C -0.09 -1.25 9.73 -39.59 -0.39 -1.63 16 27 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.07 1.33 7.26 -51.93 -0.38 0.95 16 29 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.06 0.76 6.00 -51.93 -0.31 0.45 16 31 H 0.07 1.11 7.89 -51.93 -0.41 0.70 16 32 H 0.04 1.25 7.42 -51.93 -0.39 0.86 16 33 H 0.03 0.77 7.89 -51.93 -0.41 0.36 16 34 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 35 H 0.10 0.92 8.14 -51.92 -0.42 0.50 16 36 H 0.10 1.36 6.18 -51.93 -0.32 1.04 16 37 H 0.12 2.12 5.80 -52.49 -0.30 1.82 16 38 H 0.13 2.11 8.06 -52.49 -0.42 1.69 16 39 H 0.13 1.56 8.06 -52.48 -0.42 1.14 16 40 H 0.12 1.37 8.06 -52.49 -0.42 0.95 16 LS Contribution 334.21 15.07 5.04 5.04 Total: -1.00 -32.09 334.21 -8.53 -40.62 By element: Atomic # 1 Polarization: 7.33 SS G_CDS: -5.34 Total: 1.99 kcal Atomic # 6 Polarization: -7.93 SS G_CDS: -3.62 Total: -11.55 kcal Atomic # 7 Polarization: -38.54 SS G_CDS: 0.31 Total: -38.24 kcal Atomic # 8 Polarization: -12.10 SS G_CDS: 0.06 Total: -12.04 kcal Atomic # 9 Polarization: -2.53 SS G_CDS: 0.04 Total: -2.49 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.67 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -32.09 -8.53 -40.62 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103208763.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.588 kcal (2) G-P(sol) polarization free energy of solvation -32.092 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.504 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.530 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.622 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.034 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds