Wall clock time and date at job start Tue Mar 31 2020 06:06:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 N 1.46497 * 109.46926 * 2 1 4 4 C 1.46493 * 120.00235 * 90.00466 * 3 2 1 5 5 C 1.50706 * 109.47128 * 269.99530 * 4 3 2 6 6 H 1.08000 * 119.99302 * 359.97438 * 5 4 3 7 7 C 1.37871 * 120.00436 * 179.72498 * 5 4 3 8 8 N 1.31515 * 119.99684 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 120.00405 * 180.02562 * 7 5 4 10 10 H 1.48497 * 109.47154 * 89.99418 * 9 7 5 11 11 H 1.48493 * 109.47010 * 209.99942 * 9 7 5 12 12 H 1.48502 * 109.46736 * 329.99638 * 9 7 5 13 13 C 1.34783 * 119.99658 * 269.99594 * 3 2 1 14 14 O 1.21284 * 119.99626 * 180.02562 * 13 3 2 15 15 C 1.50696 * 120.00310 * 0.02562 * 13 3 2 16 16 H 1.09000 * 115.54855 * 325.58001 * 15 13 3 17 17 C 1.53000 * 117.49873 * 111.25030 * 15 13 3 18 18 C 1.53005 * 117.49975 * 179.90867 * 15 13 3 19 19 H 1.08993 * 117.49309 * 145.01831 * 18 15 13 20 20 C 1.50694 * 117.49816 * 0.02562 * 18 15 13 21 21 C 1.38248 * 119.97259 * 299.71950 * 20 18 15 22 22 C 1.38202 * 120.02480 * 179.77059 * 21 20 18 23 23 C 1.38458 * 119.97314 * 0.50478 * 22 21 20 24 24 F 1.35097 * 120.02451 * 179.76842 * 23 22 21 25 25 C 1.38454 * 119.94956 * 359.74950 * 23 22 21 26 26 C 1.38204 * 119.97697 * 359.97438 * 25 23 22 27 27 H 1.08993 * 109.47111 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.46792 * 300.00225 * 1 2 3 29 29 H 1.08997 * 109.46846 * 60.00212 * 1 2 3 30 30 H 1.08998 * 109.46792 * 239.99775 * 2 1 3 31 31 H 1.08997 * 109.46846 * 119.99788 * 2 1 3 32 32 H 1.09001 * 109.47786 * 149.99803 * 4 3 2 33 33 H 1.08998 * 109.47558 * 29.99666 * 4 3 2 34 34 H 0.97004 * 120.00247 * 180.02562 * 8 7 5 35 35 H 1.09009 * 117.49336 * 214.97819 * 17 15 13 36 36 H 1.08993 * 117.50071 * 359.97438 * 17 15 13 37 37 H 1.07997 * 119.98937 * 0.02747 * 21 20 18 38 38 H 1.07999 * 120.01140 * 180.26343 * 22 21 20 39 39 H 1.08004 * 120.01616 * 179.97438 * 25 23 22 40 40 H 1.07995 * 119.99071 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2626 2.0718 1.2686 5 6 1.0068 2.7823 1.7037 6 1 0.1160 2.7254 1.0957 7 6 0.9935 3.5006 2.8805 8 7 2.0767 3.5654 3.6235 9 14 -0.5633 4.3807 3.4201 10 1 -1.3827 3.4684 4.2577 11 1 -0.2025 5.5862 4.2085 12 1 -1.3424 4.7871 2.2230 13 6 2.2430 2.0165 -1.1673 14 8 2.6477 3.1598 -1.1673 15 6 1.9914 1.3063 -2.4724 16 1 2.2026 0.2369 -2.4739 17 6 0.8232 1.7969 -3.3299 18 6 2.2635 2.0820 -3.7628 19 1 2.6533 1.5229 -4.6133 20 6 2.7631 3.4976 -3.6314 21 6 1.9948 4.4435 -2.9785 22 6 2.4540 5.7409 -2.8532 23 6 3.6795 6.0958 -3.3911 24 9 4.1274 7.3650 -3.2733 25 6 4.4458 5.1490 -4.0493 26 6 3.9871 3.8508 -4.1684 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 3.0645 2.7985 1.1384 33 1 2.5507 1.3452 2.0283 34 1 2.0673 4.0705 4.4516 35 1 0.2661 1.0503 -3.8960 36 1 0.2364 2.6331 -2.9500 37 1 1.0371 4.1674 -2.5625 38 1 1.8555 6.4786 -2.3394 39 1 5.4017 5.4248 -4.4696 40 1 4.5848 3.1120 -4.6814 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000103208763.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:56 Heat of formation + Delta-G solvation = -39.797649 kcal Electronic energy + Delta-G solvation = -23580.755933 eV Core-core repulsion = 20082.413911 eV Total energy + Delta-G solvation = -3498.342021 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.138 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -49.85534 -41.41791 -39.62102 -37.34177 -36.60909 -34.80881 -31.98627 -31.46425 -31.08907 -29.30817 -26.03776 -24.74281 -24.20432 -23.77277 -23.35283 -21.45118 -19.52646 -18.80755 -18.61649 -18.21176 -17.14645 -17.07676 -16.54918 -16.46786 -15.88845 -15.81994 -15.35855 -15.14509 -14.52615 -14.39658 -14.25871 -14.12267 -14.02991 -13.69053 -13.49347 -13.22225 -13.01974 -12.95492 -12.70112 -12.52048 -12.35296 -12.17150 -11.87721 -11.75094 -11.62687 -11.42925 -11.23271 -10.63432 -10.49424 -9.80643 -9.32079 -9.03308 -8.21313 -6.34342 0.25839 0.47415 1.32608 1.35500 1.44899 1.81650 2.30263 2.47113 2.68980 3.08120 3.17095 3.40893 3.60105 3.83518 3.88122 3.99030 4.03975 4.07334 4.22606 4.39777 4.45122 4.54227 4.60460 4.66124 4.89110 4.93773 5.01798 5.07519 5.09412 5.10465 5.14412 5.22625 5.27185 5.29591 5.43110 5.55636 5.62669 5.72287 5.92165 6.08729 6.09425 6.73910 6.91675 7.31649 7.62758 8.85391 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.013143 B = 0.005978 C = 0.004603 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2129.925917 B = 4682.910401 C = 6081.002389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.105 3.895 3 N -0.602 5.602 4 C 0.264 3.736 5 C -0.525 4.525 6 H 0.055 0.945 7 C 0.005 3.995 8 N -0.931 5.931 9 Si 0.960 3.040 10 H -0.264 1.264 11 H -0.285 1.285 12 H -0.272 1.272 13 C 0.514 3.486 14 O -0.571 6.571 15 C -0.180 4.180 16 H 0.160 0.840 17 C -0.135 4.135 18 C -0.083 4.083 19 H 0.163 0.837 20 C -0.059 4.059 21 C -0.032 4.032 22 C -0.183 4.183 23 C 0.066 3.934 24 F -0.156 7.156 25 C -0.166 4.166 26 C -0.085 4.085 27 H 0.089 0.911 28 H 0.033 0.967 29 H 0.056 0.944 30 H 0.108 0.892 31 H 0.067 0.933 32 H -0.007 1.007 33 H 0.015 0.985 34 H 0.264 0.736 35 H 0.149 0.851 36 H 0.078 0.922 37 H 0.110 0.890 38 H 0.117 0.883 39 H 0.152 0.848 40 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.263 -8.610 -18.169 20.145 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.017 4.017 3 N -0.333 5.333 4 C 0.143 3.857 5 C -0.564 4.564 6 H 0.073 0.927 7 C -0.193 4.193 8 N -0.572 5.572 9 Si 0.785 3.215 10 H -0.189 1.189 11 H -0.211 1.211 12 H -0.197 1.197 13 C 0.303 3.697 14 O -0.451 6.451 15 C -0.200 4.200 16 H 0.177 0.823 17 C -0.172 4.172 18 C -0.101 4.101 19 H 0.181 0.819 20 C -0.059 4.059 21 C -0.050 4.050 22 C -0.202 4.202 23 C 0.047 3.953 24 F -0.135 7.135 25 C -0.185 4.185 26 C -0.103 4.103 27 H 0.107 0.893 28 H 0.052 0.948 29 H 0.075 0.925 30 H 0.126 0.874 31 H 0.086 0.914 32 H 0.012 0.988 33 H 0.033 0.967 34 H 0.073 0.927 35 H 0.167 0.833 36 H 0.097 0.903 37 H 0.128 0.872 38 H 0.135 0.865 39 H 0.170 0.830 40 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -0.967 -7.919 -17.959 19.651 hybrid contribution -0.496 1.380 1.549 2.133 sum -1.463 -6.539 -16.410 17.725 Atomic orbital electron populations 1.22125 0.95548 1.02610 1.01582 1.21715 0.95198 0.81301 1.03457 1.48250 1.63961 1.14947 1.06112 1.18650 0.95250 0.91300 0.80545 1.21663 0.97831 1.31029 1.05853 0.92682 1.25815 0.99527 0.97203 0.96764 1.70057 1.29614 1.42887 1.14607 0.85529 0.79513 0.78238 0.78257 1.18863 1.21068 1.19725 1.20491 0.77358 0.86172 0.85632 1.90720 1.47762 1.19421 1.87201 1.22439 1.08085 1.01217 0.88304 0.82311 1.23248 0.90281 1.03395 1.00253 1.21293 0.99312 0.92073 0.97385 0.81929 1.19264 0.94804 0.94316 0.97498 1.20654 0.99538 0.91345 0.93444 1.21077 0.96692 0.98685 1.03754 1.17925 0.95049 0.79497 1.02785 1.91415 1.89391 1.37955 1.94751 1.21241 1.01190 0.93512 1.02523 1.21051 0.94898 0.95419 0.98952 0.89275 0.94797 0.92513 0.87428 0.91419 0.98844 0.96674 0.92684 0.83315 0.90309 0.87203 0.86484 0.83020 0.81849 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.37 10.24 71.98 0.74 -3.63 16 2 C 0.11 3.06 6.00 86.38 0.52 3.58 16 3 N -0.60 -24.57 2.46 -826.15 -2.03 -26.60 16 4 C 0.26 14.21 5.20 85.64 0.45 14.65 16 5 C -0.53 -29.98 8.92 25.60 0.23 -29.75 16 6 H 0.05 3.10 7.42 -2.91 -0.02 3.08 16 7 C 0.01 0.31 5.46 84.65 0.46 0.77 16 8 N -0.93 -57.31 13.29 21.45 0.28 -57.02 16 9 Si 0.96 45.57 29.54 68.60 2.03 47.59 16 10 H -0.26 -11.74 7.11 99.48 0.71 -11.03 16 11 H -0.28 -13.43 7.11 99.48 0.71 -12.72 16 12 H -0.27 -12.72 7.11 99.48 0.71 -12.01 16 13 C 0.51 19.90 7.32 87.65 0.64 20.54 16 14 O -0.57 -27.32 11.31 -3.04 -0.03 -27.35 16 15 C -0.18 -4.32 5.28 -11.54 -0.06 -4.38 16 16 H 0.16 2.62 6.44 -2.39 -0.02 2.61 16 17 C -0.13 -2.65 9.58 30.62 0.29 -2.35 16 18 C -0.08 -1.71 6.04 -11.52 -0.07 -1.78 16 19 H 0.16 1.97 8.14 -2.39 -0.02 1.95 16 20 C -0.06 -1.69 4.35 -19.86 -0.09 -1.77 16 21 C -0.03 -1.11 6.19 22.26 0.14 -0.97 16 22 C -0.18 -6.81 10.03 22.31 0.22 -6.59 16 23 C 0.07 2.32 7.30 22.37 0.16 2.48 16 24 F -0.16 -5.55 17.27 44.97 0.78 -4.77 16 25 C -0.17 -4.75 10.03 22.31 0.22 -4.53 16 26 C -0.09 -2.19 9.73 22.26 0.22 -1.97 16 27 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 28 H 0.03 1.18 7.26 -2.39 -0.02 1.17 16 29 H 0.06 1.46 8.14 -2.39 -0.02 1.45 16 30 H 0.11 2.15 6.00 -2.39 -0.01 2.13 16 31 H 0.07 2.01 7.89 -2.39 -0.02 1.99 16 32 H -0.01 -0.41 7.42 -2.39 -0.02 -0.43 16 33 H 0.02 0.85 7.89 -2.39 -0.02 0.83 16 34 H 0.26 15.35 8.31 -92.71 -0.77 14.58 16 35 H 0.15 1.67 8.14 -2.38 -0.02 1.65 16 36 H 0.08 1.98 6.18 -2.39 -0.01 1.96 16 37 H 0.11 4.03 5.80 -2.91 -0.02 4.01 16 38 H 0.12 4.34 8.06 -2.91 -0.02 4.32 16 39 H 0.15 3.44 8.06 -2.91 -0.02 3.42 16 40 H 0.16 2.82 8.06 -2.91 -0.02 2.80 16 Total: -1.00 -76.54 334.21 6.15 -70.39 By element: Atomic # 1 Polarization: 12.44 SS G_CDS: 1.05 Total: 13.48 kcal Atomic # 6 Polarization: -19.79 SS G_CDS: 4.07 Total: -15.72 kcal Atomic # 7 Polarization: -81.88 SS G_CDS: -1.74 Total: -83.62 kcal Atomic # 8 Polarization: -27.32 SS G_CDS: -0.03 Total: -27.35 kcal Atomic # 9 Polarization: -5.55 SS G_CDS: 0.78 Total: -4.77 kcal Atomic # 14 Polarization: 45.57 SS G_CDS: 2.03 Total: 47.59 kcal Total: -76.54 6.15 -70.39 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103208763.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.594 kcal (2) G-P(sol) polarization free energy of solvation -76.537 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.943 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.145 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.391 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.798 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds