Wall clock time and date at job start Tue Mar 31 2020 06:34:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46508 * 1 3 3 C 1.36933 * 119.99814 * 2 1 4 4 H 1.08002 * 119.99992 * 198.14845 * 3 2 1 5 5 C 1.38817 * 119.99962 * 18.16109 * 3 2 1 6 6 N 1.31612 * 120.00126 * 16.60447 * 5 3 2 7 7 Si 1.86805 * 119.99694 * 196.60687 * 5 3 2 8 8 H 1.48499 * 109.46810 * 94.97874 * 7 5 3 9 9 H 1.48500 * 109.46672 * 214.97596 * 7 5 3 10 10 H 1.48494 * 109.47119 * 334.97605 * 7 5 3 11 11 C 1.46501 * 120.00033 * 180.02562 * 2 1 3 12 12 C 1.53003 * 109.46932 * 270.00183 * 11 2 1 13 13 C 1.50699 * 109.47076 * 179.97438 * 12 11 2 14 14 O 1.21235 * 119.99964 * 359.97438 * 13 12 11 15 15 N 1.34775 * 119.99981 * 179.97438 * 13 12 11 16 16 C 1.34774 * 120.00180 * 179.97438 * 15 13 12 17 17 O 1.21535 * 120.00007 * 0.02562 * 16 15 13 18 18 N 1.34774 * 120.00144 * 180.02562 * 16 15 13 19 19 C 1.39933 * 120.00057 * 185.42981 * 18 16 15 20 20 C 1.38869 * 120.07184 * 31.61076 * 19 18 16 21 21 C 1.38110 * 119.93128 * 179.97438 * 20 19 18 22 22 C 1.38279 * 120.07207 * 359.97438 * 21 20 19 23 23 C 1.38280 * 120.13936 * 359.97438 * 22 21 20 24 24 C 1.38116 * 120.07007 * 0.02562 * 23 22 21 25 25 H 1.08995 * 109.46831 * 275.13087 * 1 2 3 26 26 H 1.08995 * 109.46853 * 35.13242 * 1 2 3 27 27 H 1.08998 * 109.46797 * 155.13107 * 1 2 3 28 28 H 0.96998 * 119.99949 * 179.97438 * 6 5 3 29 29 H 1.08998 * 109.47377 * 149.99971 * 11 2 1 30 30 H 1.09000 * 109.47012 * 29.99664 * 11 2 1 31 31 H 1.08998 * 109.47263 * 59.99718 * 12 11 2 32 32 H 1.09006 * 109.46873 * 300.00025 * 12 11 2 33 33 H 0.97008 * 119.99744 * 0.02562 * 15 13 12 34 34 H 0.97007 * 120.00155 * 5.42779 * 18 16 15 35 35 H 1.07999 * 120.03295 * 359.69566 * 20 19 18 36 36 H 1.07999 * 119.96528 * 179.97438 * 21 20 19 37 37 H 1.08001 * 119.93027 * 179.97438 * 22 21 20 38 38 H 1.08002 * 119.96502 * 180.02562 * 23 22 21 39 39 H 1.08000 * 120.03237 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1894 1.2092 -0.2913 5 6 1.5074 2.3581 0.3747 6 7 0.3686 2.3033 1.0321 7 14 2.2597 4.0134 -0.0541 8 1 1.6684 4.5122 -1.3217 9 1 1.9807 4.9813 1.0369 10 1 3.7278 3.8622 -0.2185 11 6 2.1976 -1.2687 -0.0006 12 6 2.4525 -1.7110 1.4418 13 6 3.2055 -3.0164 1.4412 14 8 3.5079 -3.5414 0.3911 15 7 3.5427 -3.6003 2.6082 16 6 4.2157 -4.7681 2.6077 17 8 4.5188 -5.2943 1.5550 18 7 4.5525 -5.3522 3.7747 19 6 5.3482 -6.5033 3.7769 20 6 6.3021 -6.6917 2.7854 21 6 7.0862 -7.8286 2.7907 22 6 6.9226 -8.7786 3.7822 23 6 5.9744 -8.5934 4.7715 24 6 5.1871 -7.4586 4.7718 25 1 -0.3633 0.0919 1.0235 26 1 -0.3633 0.8404 -0.5914 27 1 -0.3633 -0.9324 -0.4322 28 1 -0.0800 3.1224 1.2942 29 1 3.1500 -1.1382 -0.5143 30 1 1.6085 -2.0282 -0.5147 31 1 1.5001 -1.8416 1.9555 32 1 3.0416 -0.9515 1.9560 33 1 3.3004 -3.1805 3.4484 34 1 4.2433 -4.9747 4.6131 35 1 6.4275 -5.9521 2.0085 36 1 7.8279 -7.9759 2.0197 37 1 7.5367 -9.6670 3.7839 38 1 5.8492 -9.3370 5.5447 39 1 4.4464 -7.3148 5.5445 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000103472704.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:34:51 Heat of formation + Delta-G solvation = -5.061113 kcal Electronic energy + Delta-G solvation = -22119.221774 eV Core-core repulsion = 18642.306004 eV Total energy + Delta-G solvation = -3476.915770 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.137 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.40178 -39.62455 -38.03157 -35.69853 -34.98050 -34.42061 -31.97972 -31.12165 -29.96986 -29.35506 -25.95280 -25.06847 -23.42405 -22.87621 -21.56103 -20.61325 -20.13109 -18.88023 -17.90738 -16.96127 -16.58538 -16.25967 -16.03272 -15.25900 -14.86023 -14.72079 -14.34772 -14.22497 -13.95794 -13.60041 -13.40718 -13.12715 -12.90077 -12.43269 -12.09795 -11.94520 -11.51163 -11.29775 -10.93340 -10.87721 -10.79568 -10.58952 -10.54800 -10.18671 -10.06356 -9.94337 -9.83547 -9.46506 -9.13416 -8.57846 -8.35137 -6.88357 -5.78066 -3.19494 1.05549 1.19343 2.19712 2.23105 3.23078 3.36781 3.44150 3.45083 3.64987 3.72206 4.46931 4.64575 4.72930 4.89050 4.94563 5.16919 5.26623 5.34996 5.35569 5.65735 5.71773 5.73296 5.87108 5.92384 6.08887 6.17978 6.26641 6.28538 6.35785 6.55933 6.64052 6.73262 6.81800 6.89531 7.30500 7.36565 7.66166 7.78775 8.15185 8.21803 8.33684 9.18878 9.82889 10.30037 11.27286 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.037991 B = 0.002564 C = 0.002551 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 736.846313 B =10916.284438 C =10971.368831 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.160 3.840 2 N -0.601 5.601 3 C -0.256 4.256 4 H 0.072 0.928 5 C 0.000 4.000 6 N -0.907 5.907 7 Si 0.904 3.096 8 H -0.288 1.288 9 H -0.292 1.292 10 H -0.279 1.279 11 C 0.166 3.834 12 C -0.156 4.156 13 C 0.518 3.482 14 O -0.471 6.471 15 N -0.692 5.692 16 C 0.692 3.308 17 O -0.514 6.514 18 N -0.683 5.683 19 C 0.166 3.834 20 C -0.123 4.123 21 C -0.099 4.099 22 C -0.140 4.140 23 C -0.101 4.101 24 C -0.150 4.150 25 H 0.029 0.971 26 H 0.046 0.954 27 H 0.000 1.000 28 H 0.252 0.748 29 H 0.054 0.946 30 H 0.047 0.953 31 H 0.092 0.908 32 H 0.100 0.900 33 H 0.411 0.589 34 H 0.409 0.591 35 H 0.139 0.861 36 H 0.125 0.875 37 H 0.122 0.878 38 H 0.125 0.875 39 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.625 -18.157 11.712 23.264 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 N -0.322 5.322 3 C -0.385 4.385 4 H 0.090 0.910 5 C -0.198 4.198 6 N -0.553 5.553 7 Si 0.734 3.266 8 H -0.215 1.215 9 H -0.218 1.218 10 H -0.204 1.204 11 C 0.038 3.962 12 C -0.200 4.200 13 C 0.306 3.694 14 O -0.338 6.338 15 N -0.359 5.359 16 C 0.393 3.607 17 O -0.385 6.385 18 N -0.333 5.333 19 C 0.071 3.929 20 C -0.143 4.143 21 C -0.117 4.117 22 C -0.159 4.159 23 C -0.120 4.120 24 C -0.170 4.170 25 H 0.047 0.953 26 H 0.065 0.935 27 H 0.018 0.982 28 H 0.063 0.937 29 H 0.072 0.928 30 H 0.066 0.934 31 H 0.110 0.890 32 H 0.119 0.881 33 H 0.246 0.754 34 H 0.244 0.756 35 H 0.156 0.844 36 H 0.143 0.857 37 H 0.140 0.860 38 H 0.143 0.857 39 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 8.911 -18.692 10.034 23.011 hybrid contribution -0.048 1.407 1.080 1.774 sum 8.863 -17.286 11.114 22.380 Atomic orbital electron populations 1.20851 0.82306 0.95867 0.99449 1.44108 1.02120 1.00732 1.85290 1.19298 0.96035 0.84580 1.38602 0.91037 1.24934 0.97789 0.98288 0.98805 1.70100 1.18359 1.26563 1.40232 0.86237 0.78678 0.83942 0.77717 1.21493 1.21846 1.20425 1.20634 0.96904 0.88021 0.90671 1.22764 1.00056 0.90994 1.06170 1.21848 0.78573 0.87050 0.81959 1.90786 1.49351 1.63368 1.30334 1.44593 1.56265 1.22359 1.12633 1.16281 0.79148 0.81077 0.84238 1.91067 1.55190 1.62749 1.29460 1.42802 1.53846 1.28206 1.08422 1.17542 0.91495 0.86659 0.97225 1.21305 0.94198 0.99509 0.99327 1.21076 0.98843 0.93560 0.98258 1.21138 0.99569 0.99742 0.95488 1.20912 0.95647 0.96752 0.98672 1.20839 1.01964 0.93902 1.00334 0.95315 0.93508 0.98156 0.93742 0.92785 0.93422 0.88984 0.88142 0.75436 0.75563 0.84362 0.85679 0.86039 0.85716 0.85698 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.86 9.02 59.85 0.54 4.40 16 2 N -0.60 -14.87 2.93 -181.11 -0.53 -15.40 16 3 C -0.26 -6.88 9.69 -15.06 -0.15 -7.03 16 4 H 0.07 1.90 7.86 -52.49 -0.41 1.49 16 5 C 0.00 0.00 5.04 -17.43 -0.09 -0.09 16 6 N -0.91 -25.62 10.64 55.49 0.59 -25.03 16 7 Si 0.90 21.49 29.59 -169.99 -5.03 16.46 16 8 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 9 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 10 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 11 C 0.17 3.47 5.00 -4.04 -0.02 3.45 16 12 C -0.16 -2.64 6.02 -27.88 -0.17 -2.81 16 13 C 0.52 8.51 7.77 -10.99 -0.09 8.43 16 14 O -0.47 -9.83 14.38 -18.21 -0.26 -10.09 16 15 N -0.69 -8.47 5.24 -15.78 -0.08 -8.56 16 16 C 0.69 9.59 8.25 -86.92 -0.72 8.87 16 17 O -0.51 -9.63 12.32 -18.47 -0.23 -9.86 16 18 N -0.68 -6.71 5.35 -14.24 -0.08 -6.78 16 19 C 0.17 1.80 6.31 -83.69 -0.53 1.27 16 20 C -0.12 -1.50 8.67 -39.39 -0.34 -1.85 16 21 C -0.10 -0.99 10.04 -39.61 -0.40 -1.39 16 22 C -0.14 -1.18 10.04 -39.55 -0.40 -1.58 16 23 C -0.10 -0.80 10.04 -39.61 -0.40 -1.20 16 24 C -0.15 -1.28 9.96 -39.39 -0.39 -1.67 16 25 H 0.03 0.73 7.45 -51.93 -0.39 0.34 16 26 H 0.05 1.22 7.11 -51.93 -0.37 0.85 16 27 H 0.00 0.00 7.83 -51.93 -0.41 -0.41 16 28 H 0.25 6.93 8.31 -40.82 -0.34 6.59 16 29 H 0.05 1.17 7.98 -51.93 -0.41 0.75 16 30 H 0.05 0.97 7.82 -51.93 -0.41 0.57 16 31 H 0.09 1.46 8.14 -51.93 -0.42 1.03 16 32 H 0.10 1.70 8.14 -51.93 -0.42 1.28 16 33 H 0.41 3.15 8.72 -40.82 -0.36 2.79 16 34 H 0.41 2.34 8.83 -40.82 -0.36 1.98 16 35 H 0.14 1.99 6.28 -52.49 -0.33 1.66 16 36 H 0.13 1.03 8.06 -52.49 -0.42 0.61 16 37 H 0.12 0.74 8.06 -52.49 -0.42 0.32 16 38 H 0.12 0.67 8.06 -52.49 -0.42 0.25 16 39 H 0.13 0.76 8.06 -52.49 -0.42 0.34 16 LS Contribution 334.33 15.07 5.04 5.04 Total: -1.00 -35.30 334.33 -8.83 -44.13 By element: Atomic # 1 Polarization: 6.38 SS G_CDS: -5.11 Total: 1.27 kcal Atomic # 6 Polarization: 11.96 SS G_CDS: -3.14 Total: 8.82 kcal Atomic # 7 Polarization: -55.67 SS G_CDS: -0.10 Total: -55.77 kcal Atomic # 8 Polarization: -19.46 SS G_CDS: -0.49 Total: -19.95 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.03 Total: 16.46 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -35.30 -8.83 -44.13 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103472704.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.071 kcal (2) G-P(sol) polarization free energy of solvation -35.300 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.771 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.832 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.132 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.061 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds