Wall clock time and date at job start Tue Mar 31 2020 06:34:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46508 * 1 3 3 C 1.36933 * 119.99814 * 2 1 4 4 H 1.08002 * 119.99992 * 198.14845 * 3 2 1 5 5 C 1.38817 * 119.99962 * 18.16109 * 3 2 1 6 6 N 1.31612 * 120.00126 * 16.60447 * 5 3 2 7 7 Si 1.86805 * 119.99694 * 196.60687 * 5 3 2 8 8 H 1.48499 * 109.46810 * 94.97874 * 7 5 3 9 9 H 1.48500 * 109.46672 * 214.97596 * 7 5 3 10 10 H 1.48494 * 109.47119 * 334.97605 * 7 5 3 11 11 C 1.46501 * 120.00033 * 180.02562 * 2 1 3 12 12 C 1.53003 * 109.46932 * 270.00183 * 11 2 1 13 13 C 1.50699 * 109.47076 * 179.97438 * 12 11 2 14 14 O 1.21235 * 119.99964 * 359.97438 * 13 12 11 15 15 N 1.34775 * 119.99981 * 179.97438 * 13 12 11 16 16 C 1.34774 * 120.00180 * 179.97438 * 15 13 12 17 17 O 1.21535 * 120.00007 * 0.02562 * 16 15 13 18 18 N 1.34774 * 120.00144 * 180.02562 * 16 15 13 19 19 C 1.39933 * 120.00057 * 185.42981 * 18 16 15 20 20 C 1.38869 * 120.07184 * 31.61076 * 19 18 16 21 21 C 1.38110 * 119.93128 * 179.97438 * 20 19 18 22 22 C 1.38279 * 120.07207 * 359.97438 * 21 20 19 23 23 C 1.38280 * 120.13936 * 359.97438 * 22 21 20 24 24 C 1.38116 * 120.07007 * 0.02562 * 23 22 21 25 25 H 1.08995 * 109.46831 * 275.13087 * 1 2 3 26 26 H 1.08995 * 109.46853 * 35.13242 * 1 2 3 27 27 H 1.08998 * 109.46797 * 155.13107 * 1 2 3 28 28 H 0.96998 * 119.99949 * 179.97438 * 6 5 3 29 29 H 1.08998 * 109.47377 * 149.99971 * 11 2 1 30 30 H 1.09000 * 109.47012 * 29.99664 * 11 2 1 31 31 H 1.08998 * 109.47263 * 59.99718 * 12 11 2 32 32 H 1.09006 * 109.46873 * 300.00025 * 12 11 2 33 33 H 0.97008 * 119.99744 * 0.02562 * 15 13 12 34 34 H 0.97007 * 120.00155 * 5.42779 * 18 16 15 35 35 H 1.07999 * 120.03295 * 359.69566 * 20 19 18 36 36 H 1.07999 * 119.96528 * 179.97438 * 21 20 19 37 37 H 1.08001 * 119.93027 * 179.97438 * 22 21 20 38 38 H 1.08002 * 119.96502 * 180.02562 * 23 22 21 39 39 H 1.08000 * 120.03237 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1894 1.2092 -0.2913 5 6 1.5074 2.3581 0.3747 6 7 0.3686 2.3033 1.0321 7 14 2.2597 4.0134 -0.0541 8 1 1.6684 4.5122 -1.3217 9 1 1.9807 4.9813 1.0369 10 1 3.7278 3.8622 -0.2185 11 6 2.1976 -1.2687 -0.0006 12 6 2.4525 -1.7110 1.4418 13 6 3.2055 -3.0164 1.4412 14 8 3.5079 -3.5414 0.3911 15 7 3.5427 -3.6003 2.6082 16 6 4.2157 -4.7681 2.6077 17 8 4.5188 -5.2943 1.5550 18 7 4.5525 -5.3522 3.7747 19 6 5.3482 -6.5033 3.7769 20 6 6.3021 -6.6917 2.7854 21 6 7.0862 -7.8286 2.7907 22 6 6.9226 -8.7786 3.7822 23 6 5.9744 -8.5934 4.7715 24 6 5.1871 -7.4586 4.7718 25 1 -0.3633 0.0919 1.0235 26 1 -0.3633 0.8404 -0.5914 27 1 -0.3633 -0.9324 -0.4322 28 1 -0.0800 3.1224 1.2942 29 1 3.1500 -1.1382 -0.5143 30 1 1.6085 -2.0282 -0.5147 31 1 1.5001 -1.8416 1.9555 32 1 3.0416 -0.9515 1.9560 33 1 3.3004 -3.1805 3.4484 34 1 4.2433 -4.9747 4.6131 35 1 6.4275 -5.9521 2.0085 36 1 7.8279 -7.9759 2.0197 37 1 7.5367 -9.6670 3.7839 38 1 5.8492 -9.3370 5.5447 39 1 4.4464 -7.3148 5.5445 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000103472704.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:34:50 Heat of formation + Delta-G solvation = -28.409424 kcal Electronic energy + Delta-G solvation = -22120.234233 eV Core-core repulsion = 18642.306004 eV Total energy + Delta-G solvation = -3477.928229 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.137 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.52568 -40.62307 -39.13102 -37.54460 -36.06611 -35.54792 -33.84467 -31.82857 -31.49407 -30.38297 -27.93764 -26.61126 -24.59552 -23.69247 -22.78565 -21.91258 -21.54539 -19.91853 -18.92330 -18.71111 -17.85964 -17.40348 -16.97041 -16.64996 -16.35304 -16.08871 -15.58657 -15.32749 -15.14700 -14.90255 -14.75769 -14.28857 -14.20518 -13.90549 -13.68681 -13.09643 -12.78666 -12.73937 -12.66391 -12.42307 -12.21870 -12.03222 -11.99249 -11.92993 -11.66132 -11.46173 -11.29212 -10.81731 -10.61855 -9.86164 -9.13552 -8.87895 -7.83672 -5.27345 0.27453 0.47225 1.00124 1.17657 1.48147 1.51257 1.58932 2.09408 2.51244 2.77484 2.90967 3.30480 3.54118 3.95231 3.98847 4.07862 4.23980 4.31337 4.33299 4.48613 4.54844 4.61125 4.74761 4.87041 4.90286 5.03005 5.12814 5.24225 5.26135 5.34053 5.38053 5.54202 5.57739 5.63631 5.65150 5.73234 6.09167 6.30421 6.42253 6.99994 7.14807 7.16639 7.85466 8.28357 9.20099 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.037991 B = 0.002564 C = 0.002551 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 736.846313 B =10916.284438 C =10971.368831 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.172 3.828 2 N -0.616 5.616 3 C -0.265 4.265 4 H 0.069 0.931 5 C -0.048 4.048 6 N -0.932 5.932 7 Si 0.964 3.036 8 H -0.291 1.291 9 H -0.292 1.292 10 H -0.271 1.271 11 C 0.165 3.835 12 C -0.138 4.138 13 C 0.530 3.470 14 O -0.519 6.519 15 N -0.671 5.671 16 C 0.690 3.310 17 O -0.565 6.565 18 N -0.660 5.660 19 C 0.142 3.858 20 C -0.153 4.153 21 C -0.112 4.112 22 C -0.138 4.138 23 C -0.099 4.099 24 C -0.142 4.142 25 H 0.015 0.985 26 H 0.018 0.982 27 H 0.028 0.972 28 H 0.249 0.751 29 H 0.040 0.960 30 H 0.050 0.950 31 H 0.110 0.890 32 H 0.105 0.895 33 H 0.435 0.565 34 H 0.430 0.570 35 H 0.105 0.895 36 H 0.132 0.868 37 H 0.148 0.852 38 H 0.159 0.841 39 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.024 -19.539 14.120 25.741 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 N -0.339 5.339 3 C -0.395 4.395 4 H 0.087 0.913 5 C -0.243 4.243 6 N -0.579 5.579 7 Si 0.793 3.207 8 H -0.218 1.218 9 H -0.218 1.218 10 H -0.195 1.195 11 C 0.038 3.962 12 C -0.181 4.181 13 C 0.318 3.682 14 O -0.390 6.390 15 N -0.339 5.339 16 C 0.391 3.609 17 O -0.439 6.439 18 N -0.311 5.311 19 C 0.047 3.953 20 C -0.174 4.174 21 C -0.131 4.131 22 C -0.157 4.157 23 C -0.118 4.118 24 C -0.163 4.163 25 H 0.034 0.966 26 H 0.037 0.963 27 H 0.046 0.954 28 H 0.059 0.941 29 H 0.058 0.942 30 H 0.069 0.931 31 H 0.128 0.872 32 H 0.123 0.877 33 H 0.274 0.726 34 H 0.270 0.730 35 H 0.123 0.877 36 H 0.150 0.850 37 H 0.166 0.834 38 H 0.176 0.824 39 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 9.327 -20.093 12.545 25.458 hybrid contribution -0.111 1.684 0.368 1.727 sum 9.216 -18.409 12.913 24.302 Atomic orbital electron populations 1.20640 0.82229 0.96059 0.98299 1.44248 1.02410 1.01399 1.85852 1.19522 0.96117 0.85734 1.38085 0.91279 1.25607 0.98469 1.01131 0.99130 1.70226 1.19455 1.26947 1.41226 0.85292 0.78295 0.80137 0.76962 1.21834 1.21846 1.19532 1.20607 0.95870 0.86681 0.93062 1.22359 1.01173 0.91274 1.03289 1.21560 0.77772 0.86604 0.82234 1.90786 1.51318 1.64545 1.32350 1.44093 1.55290 1.21879 1.12614 1.16407 0.78803 0.81063 0.84603 1.91050 1.57075 1.64063 1.31747 1.42499 1.52852 1.27708 1.08006 1.17768 0.91807 0.87655 0.98054 1.21232 0.96369 1.00093 0.99681 1.21262 0.98977 0.93478 0.99375 1.21499 0.99686 0.99848 0.94650 1.21384 0.94510 0.96969 0.98896 1.21186 1.02207 0.93070 0.99802 0.96636 0.96300 0.95351 0.94129 0.94151 0.93125 0.87180 0.87710 0.72554 0.73005 0.87716 0.84987 0.83425 0.82378 0.82701 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.17 8.32 9.02 127.77 1.15 9.48 16 2 N -0.62 -30.45 2.93 -726.92 -2.13 -32.58 16 3 C -0.26 -14.25 9.69 84.04 0.81 -13.44 16 4 H 0.07 3.68 7.86 -2.91 -0.02 3.65 16 5 C -0.05 -2.61 5.04 84.86 0.43 -2.18 16 6 N -0.93 -52.87 10.64 21.65 0.23 -52.64 16 7 Si 0.96 44.22 29.59 68.60 2.03 46.25 16 8 H -0.29 -13.42 7.11 99.48 0.71 -12.71 16 9 H -0.29 -13.29 7.11 99.48 0.71 -12.59 16 10 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 11 C 0.16 6.86 5.00 86.38 0.43 7.29 16 12 C -0.14 -4.51 6.02 29.85 0.18 -4.33 16 13 C 0.53 17.15 7.77 87.66 0.68 17.83 16 14 O -0.52 -22.10 14.38 19.87 0.29 -21.82 16 15 N -0.67 -15.61 5.24 -440.54 -2.31 -17.92 16 16 C 0.69 18.91 8.25 179.06 1.48 20.39 16 17 O -0.57 -21.94 12.32 18.94 0.23 -21.71 16 18 N -0.66 -12.02 5.35 -317.24 -1.70 -13.72 16 19 C 0.14 2.92 6.31 38.15 0.24 3.16 16 20 C -0.15 -3.86 8.67 22.39 0.19 -3.67 16 21 C -0.11 -2.22 10.04 22.25 0.22 -2.00 16 22 C -0.14 -1.99 10.04 22.29 0.22 -1.76 16 23 C -0.10 -1.21 10.04 22.25 0.22 -0.99 16 24 C -0.14 -1.99 9.96 22.39 0.22 -1.77 16 25 H 0.02 0.78 7.45 -2.39 -0.02 0.76 16 26 H 0.02 0.98 7.11 -2.39 -0.02 0.96 16 27 H 0.03 1.18 7.83 -2.39 -0.02 1.16 16 28 H 0.25 13.76 8.31 -92.71 -0.77 12.98 16 29 H 0.04 1.77 7.98 -2.39 -0.02 1.75 16 30 H 0.05 2.06 7.82 -2.39 -0.02 2.04 16 31 H 0.11 3.25 8.14 -2.39 -0.02 3.23 16 32 H 0.10 3.39 8.14 -2.38 -0.02 3.37 16 33 H 0.43 5.58 8.72 -92.70 -0.81 4.77 16 34 H 0.43 3.76 8.83 -92.70 -0.82 2.94 16 35 H 0.10 3.31 6.28 -2.91 -0.02 3.29 16 36 H 0.13 2.24 8.06 -2.91 -0.02 2.21 16 37 H 0.15 1.30 8.06 -2.91 -0.02 1.28 16 38 H 0.16 0.89 8.06 -2.91 -0.02 0.87 16 39 H 0.16 1.19 8.06 -2.91 -0.02 1.16 16 Total: -1.00 -78.77 334.33 2.59 -76.18 By element: Atomic # 1 Polarization: 10.47 SS G_CDS: -0.54 Total: 9.93 kcal Atomic # 6 Polarization: 21.53 SS G_CDS: 6.49 Total: 28.02 kcal Atomic # 7 Polarization: -110.94 SS G_CDS: -5.91 Total: -116.85 kcal Atomic # 8 Polarization: -44.04 SS G_CDS: 0.52 Total: -43.53 kcal Atomic # 14 Polarization: 44.22 SS G_CDS: 2.03 Total: 46.25 kcal Total: -78.77 2.59 -76.18 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103472704.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.768 kcal (2) G-P(sol) polarization free energy of solvation -78.770 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.003 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.593 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.177 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.409 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds