Wall clock time and date at job start Tue Mar 31 2020 06:58:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00238 * 2 1 4 4 H 1.48498 * 109.47109 * 270.00337 * 3 2 1 5 5 H 1.48507 * 109.46754 * 30.00076 * 3 2 1 6 6 H 1.48498 * 109.47278 * 149.99907 * 3 2 1 7 7 C 1.37884 * 119.99985 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99697 * 359.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 180.27663 * 7 2 1 10 10 C 1.52996 * 109.47159 * 179.72211 * 9 7 2 11 11 C 1.52994 * 109.47119 * 180.02562 * 10 9 7 12 12 N 1.46902 * 109.46988 * 180.02562 * 11 10 9 13 13 C 1.46469 * 111.00217 * 295.97583 * 12 11 10 14 14 C 1.53242 * 109.86462 * 162.23499 * 13 12 11 15 15 S 1.81905 * 108.50543 * 62.00144 * 14 13 12 16 16 C 1.81898 * 101.91278 * 308.69921 * 15 14 13 17 17 C 1.46476 * 110.99962 * 169.99444 * 12 11 10 18 18 H 1.09003 * 109.40262 * 77.72491 * 17 12 11 19 19 C 1.50699 * 109.40545 * 317.88539 * 17 12 11 20 20 C 1.38234 * 119.99799 * 319.72458 * 19 17 12 21 21 C 1.38236 * 119.99362 * 179.79081 * 20 19 17 22 22 C 1.38231 * 120.00233 * 0.44275 * 21 20 19 23 23 C 1.38234 * 120.00172 * 359.80997 * 22 21 20 24 24 C 1.38232 * 119.99719 * 359.97438 * 23 22 21 25 25 H 0.96996 * 119.99730 * 359.97438 * 1 2 3 26 26 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 27 27 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 28 28 H 1.09004 * 109.47066 * 299.99797 * 10 9 7 29 29 H 1.09000 * 109.47234 * 59.99288 * 10 9 7 30 30 H 1.08998 * 109.46640 * 299.99314 * 11 10 9 31 31 H 1.08994 * 109.47663 * 59.99852 * 11 10 9 32 32 H 1.09000 * 109.40298 * 282.35954 * 13 12 11 33 33 H 1.09006 * 109.40334 * 42.11446 * 13 12 11 34 34 H 1.09000 * 109.63128 * 302.30128 * 14 13 12 35 35 H 1.08999 * 109.80018 * 181.80640 * 14 13 12 36 36 H 1.08997 * 109.62954 * 291.59574 * 16 15 14 37 37 H 1.09005 * 109.62530 * 171.01009 * 16 15 14 38 38 H 1.08000 * 120.00267 * 359.97438 * 20 19 17 39 39 H 1.08004 * 120.00045 * 180.26992 * 21 20 19 40 40 H 1.08001 * 120.00210 * 179.83607 * 22 21 20 41 41 H 1.08000 * 120.00086 * 180.02562 * 23 22 21 42 42 H 1.08002 * 120.00123 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5116 -1.1941 0.0058 10 6 4.0215 -2.6366 0.0108 11 6 5.5515 -2.6366 0.0178 12 7 6.0411 -4.0216 0.0220 13 6 5.6458 -4.7144 1.2504 14 6 5.7657 -6.2296 1.0553 15 16 7.5066 -6.6319 0.7145 16 6 7.9006 -5.4800 -0.6370 17 6 7.4868 -4.0679 -0.2089 18 1 8.0090 -3.8017 0.7102 19 6 7.8522 -3.0883 -1.2941 20 6 7.0392 -2.9511 -2.4037 21 6 7.3722 -2.0493 -3.3971 22 6 8.5228 -1.2914 -3.2853 23 6 9.3385 -1.4325 -2.1782 24 6 9.0033 -2.3310 -1.1827 25 1 -0.4849 0.8400 0.0004 26 1 3.8786 -0.6821 -0.8838 27 1 3.8711 -0.6785 0.8962 28 1 3.6545 -3.1486 0.9003 29 1 3.6618 -3.1522 -0.8796 30 1 5.9188 -2.1245 -0.8715 31 1 5.9108 -2.1211 0.9084 32 1 6.2958 -4.4019 2.0676 33 1 4.6137 -4.4610 1.4930 34 1 5.1465 -6.5406 0.2138 35 1 5.4408 -6.7451 1.9590 36 1 7.3515 -5.7663 -1.5340 37 1 8.9719 -5.5029 -0.8370 38 1 6.1425 -3.5462 -2.4930 39 1 6.7348 -1.9389 -4.2620 40 1 8.7844 -0.5888 -4.0627 41 1 10.2373 -0.8400 -2.0907 42 1 9.6407 -2.4415 -0.3179 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000115559770.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:58:08 Heat of formation + Delta-G solvation = 26.881324 kcal Electronic energy + Delta-G solvation = -21257.614426 eV Core-core repulsion = 18328.376998 eV Total energy + Delta-G solvation = -2929.237428 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 291.135 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.10707 -37.78979 -34.24551 -32.90044 -32.01924 -30.95030 -29.77977 -29.46005 -26.33267 -24.05113 -23.21969 -22.36268 -21.85592 -20.14699 -19.89787 -17.33164 -16.71076 -16.43380 -15.92928 -15.32538 -15.01593 -14.63967 -14.39038 -14.17902 -14.11213 -13.89626 -13.39577 -13.27065 -12.94503 -12.66093 -12.55722 -12.22455 -11.94589 -11.73369 -11.61138 -11.50184 -11.09327 -11.04025 -10.88482 -10.55926 -9.98423 -9.89459 -9.67510 -9.58021 -9.18475 -8.92251 -8.67489 -8.54191 -8.32548 -7.78183 -6.04873 -4.02629 1.24297 1.37958 1.70651 2.41519 3.29710 3.37160 3.41002 3.65817 3.80199 4.44617 4.58317 4.76071 4.81804 4.88357 4.97219 5.06492 5.11202 5.15079 5.20062 5.29220 5.30610 5.47374 5.56364 5.58038 5.68699 5.75640 5.80432 5.90767 5.92273 6.03428 6.14883 6.39148 6.46358 6.48769 6.53557 6.56767 6.87404 6.95384 7.12577 7.15860 7.31998 7.43758 7.79372 8.53816 9.00392 9.58004 11.08674 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.013274 B = 0.005105 C = 0.003916 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2108.841806 B = 5483.322233 C = 7147.547090 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.066 3.934 3 Si 0.878 3.122 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.266 1.266 7 C -0.518 4.518 8 H 0.071 0.929 9 C -0.012 4.012 10 C -0.096 4.096 11 C 0.047 3.953 12 N -0.543 5.543 13 C 0.051 3.949 14 C -0.071 4.071 15 S -0.283 6.283 16 C -0.060 4.060 17 C 0.128 3.872 18 H 0.059 0.941 19 C -0.082 4.082 20 C -0.088 4.088 21 C -0.123 4.123 22 C -0.119 4.119 23 C -0.124 4.124 24 C -0.114 4.114 25 H 0.263 0.737 26 H 0.011 0.989 27 H 0.012 0.988 28 H 0.053 0.947 29 H 0.061 0.939 30 H 0.086 0.914 31 H 0.028 0.972 32 H 0.045 0.955 33 H 0.101 0.899 34 H 0.093 0.907 35 H 0.106 0.894 36 H 0.093 0.907 37 H 0.104 0.896 38 H 0.134 0.866 39 H 0.123 0.877 40 H 0.119 0.881 41 H 0.120 0.880 42 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.478 -8.481 -2.602 21.403 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.134 4.134 3 Si 0.706 3.294 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.191 1.191 7 C -0.556 4.556 8 H 0.090 0.910 9 C -0.050 4.050 10 C -0.134 4.134 11 C -0.080 4.080 12 N -0.268 5.268 13 C -0.078 4.078 14 C -0.219 4.219 15 S -0.056 6.056 16 C -0.209 4.209 17 C 0.018 3.982 18 H 0.077 0.923 19 C -0.084 4.084 20 C -0.106 4.106 21 C -0.141 4.141 22 C -0.137 4.137 23 C -0.142 4.142 24 C -0.133 4.133 25 H 0.072 0.928 26 H 0.029 0.971 27 H 0.031 0.969 28 H 0.071 0.929 29 H 0.080 0.920 30 H 0.104 0.896 31 H 0.047 0.953 32 H 0.063 0.937 33 H 0.119 0.881 34 H 0.112 0.888 35 H 0.124 0.876 36 H 0.111 0.889 37 H 0.122 0.878 38 H 0.151 0.849 39 H 0.141 0.859 40 H 0.137 0.863 41 H 0.138 0.862 42 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 19.763 -9.428 -2.451 22.034 hybrid contribution -0.063 2.252 0.089 2.255 sum 19.700 -7.176 -2.362 21.099 Atomic orbital electron populations 1.69915 1.06286 1.26837 1.51292 1.25025 0.94701 0.99111 0.94613 0.86798 0.80344 0.83737 0.78525 1.20275 1.21408 1.19108 1.21128 0.89446 0.94412 1.50619 0.91048 1.19529 0.97142 0.92203 0.96090 1.21509 0.90816 0.99649 1.01462 1.22551 0.97858 0.86282 1.01278 1.61255 1.11041 1.17878 1.36645 1.22310 1.03074 0.91821 0.90621 1.23542 0.93866 0.98834 1.05675 1.86817 1.16683 1.53886 1.48189 1.23530 1.04415 0.94179 0.98787 1.20660 0.89317 0.92370 0.95889 0.92309 1.19672 0.95489 0.97440 0.95831 1.21142 0.99112 0.97883 0.92493 1.21226 0.97004 0.96578 0.99259 1.21171 0.95091 0.99379 0.98043 1.21054 0.99923 0.98832 0.94430 1.20979 0.96666 0.96511 0.99126 0.92769 0.97110 0.96939 0.92861 0.92027 0.89561 0.95345 0.93671 0.88145 0.88814 0.87583 0.88869 0.87804 0.84858 0.85864 0.86266 0.86245 0.86345 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.96 13.96 55.43 0.77 -27.18 16 2 C 0.07 1.94 5.47 -17.82 -0.10 1.84 16 3 Si 0.88 21.85 27.47 -169.99 -4.67 17.18 16 4 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 5 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 6 H -0.27 -6.40 6.54 56.52 0.37 -6.03 16 7 C -0.52 -14.74 9.66 -34.44 -0.33 -15.07 16 8 H 0.07 2.18 7.99 -52.49 -0.42 1.76 16 9 C -0.01 -0.28 4.04 -27.88 -0.11 -0.39 16 10 C -0.10 -1.86 5.08 -26.74 -0.14 -1.99 16 11 C 0.05 0.75 4.28 -3.83 -0.02 0.73 16 12 N -0.54 -7.33 3.83 -228.43 -0.87 -8.20 16 13 C 0.05 0.64 5.29 -3.93 -0.02 0.62 16 14 C -0.07 -0.79 6.69 37.28 0.25 -0.54 16 15 S -0.28 -3.32 22.40 -107.50 -2.41 -5.72 16 16 C -0.06 -0.66 5.94 37.28 0.22 -0.44 16 17 C 0.13 1.53 2.10 -68.97 -0.14 1.38 16 18 H 0.06 0.73 7.77 -51.93 -0.40 0.32 16 19 C -0.08 -0.99 3.67 -104.63 -0.38 -1.38 16 20 C -0.09 -1.11 7.11 -39.58 -0.28 -1.39 16 21 C -0.12 -1.44 10.05 -39.58 -0.40 -1.84 16 22 C -0.12 -1.28 10.05 -39.59 -0.40 -1.67 16 23 C -0.12 -1.30 10.05 -39.59 -0.40 -1.70 16 24 C -0.11 -1.26 9.67 -39.59 -0.38 -1.64 16 25 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 26 H 0.01 0.25 7.58 -51.93 -0.39 -0.14 16 27 H 0.01 0.30 7.19 -51.93 -0.37 -0.08 16 28 H 0.05 1.02 6.19 -51.93 -0.32 0.70 16 29 H 0.06 1.22 8.14 -51.93 -0.42 0.79 16 30 H 0.09 1.41 4.65 -51.93 -0.24 1.17 16 31 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.05 0.57 7.91 -51.93 -0.41 0.16 16 33 H 0.10 1.35 5.77 -51.93 -0.30 1.05 16 34 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 35 H 0.11 1.02 8.14 -51.93 -0.42 0.60 16 36 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 37 H 0.10 1.01 8.14 -51.93 -0.42 0.59 16 38 H 0.13 1.76 7.60 -52.49 -0.40 1.36 16 39 H 0.12 1.28 8.06 -52.48 -0.42 0.86 16 40 H 0.12 1.04 8.06 -52.49 -0.42 0.61 16 41 H 0.12 0.99 8.06 -52.49 -0.42 0.56 16 42 H 0.12 1.12 8.04 -52.49 -0.42 0.70 16 LS Contribution 339.55 15.07 5.12 5.12 Total: -1.00 -30.40 339.55 -11.35 -41.74 By element: Atomic # 1 Polarization: 7.19 SS G_CDS: -6.66 Total: 0.53 kcal Atomic # 6 Polarization: -20.83 SS G_CDS: -2.63 Total: -23.46 kcal Atomic # 7 Polarization: -35.29 SS G_CDS: -0.10 Total: -35.39 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -4.67 Total: 17.18 kcal Atomic # 16 Polarization: -3.32 SS G_CDS: -2.41 Total: -5.72 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -30.40 -11.35 -41.74 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000115559770.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.626 kcal (2) G-P(sol) polarization free energy of solvation -30.398 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.228 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.347 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.745 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.881 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds