Wall clock time and date at job start Tue Mar 31 2020 06:58:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00238 * 2 1 4 4 H 1.48498 * 109.47109 * 270.00337 * 3 2 1 5 5 H 1.48507 * 109.46754 * 30.00076 * 3 2 1 6 6 H 1.48498 * 109.47278 * 149.99907 * 3 2 1 7 7 C 1.37884 * 119.99985 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99697 * 359.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 180.27663 * 7 2 1 10 10 C 1.52996 * 109.47159 * 179.72211 * 9 7 2 11 11 C 1.52994 * 109.47119 * 180.02562 * 10 9 7 12 12 N 1.46902 * 109.46988 * 180.02562 * 11 10 9 13 13 C 1.46469 * 111.00217 * 295.97583 * 12 11 10 14 14 C 1.53242 * 109.86462 * 162.23499 * 13 12 11 15 15 S 1.81905 * 108.50543 * 62.00144 * 14 13 12 16 16 C 1.81898 * 101.91278 * 308.69921 * 15 14 13 17 17 C 1.46476 * 110.99962 * 169.99444 * 12 11 10 18 18 H 1.09003 * 109.40262 * 77.72491 * 17 12 11 19 19 C 1.50699 * 109.40545 * 317.88539 * 17 12 11 20 20 C 1.38234 * 119.99799 * 319.72458 * 19 17 12 21 21 C 1.38236 * 119.99362 * 179.79081 * 20 19 17 22 22 C 1.38231 * 120.00233 * 0.44275 * 21 20 19 23 23 C 1.38234 * 120.00172 * 359.80997 * 22 21 20 24 24 C 1.38232 * 119.99719 * 359.97438 * 23 22 21 25 25 H 0.96996 * 119.99730 * 359.97438 * 1 2 3 26 26 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 27 27 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 28 28 H 1.09004 * 109.47066 * 299.99797 * 10 9 7 29 29 H 1.09000 * 109.47234 * 59.99288 * 10 9 7 30 30 H 1.08998 * 109.46640 * 299.99314 * 11 10 9 31 31 H 1.08994 * 109.47663 * 59.99852 * 11 10 9 32 32 H 1.09000 * 109.40298 * 282.35954 * 13 12 11 33 33 H 1.09006 * 109.40334 * 42.11446 * 13 12 11 34 34 H 1.09000 * 109.63128 * 302.30128 * 14 13 12 35 35 H 1.08999 * 109.80018 * 181.80640 * 14 13 12 36 36 H 1.08997 * 109.62954 * 291.59574 * 16 15 14 37 37 H 1.09005 * 109.62530 * 171.01009 * 16 15 14 38 38 H 1.08000 * 120.00267 * 359.97438 * 20 19 17 39 39 H 1.08004 * 120.00045 * 180.26992 * 21 20 19 40 40 H 1.08001 * 120.00210 * 179.83607 * 22 21 20 41 41 H 1.08000 * 120.00086 * 180.02562 * 23 22 21 42 42 H 1.08002 * 120.00123 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5116 -1.1941 0.0058 10 6 4.0215 -2.6366 0.0108 11 6 5.5515 -2.6366 0.0178 12 7 6.0411 -4.0216 0.0220 13 6 5.6458 -4.7144 1.2504 14 6 5.7657 -6.2296 1.0553 15 16 7.5066 -6.6319 0.7145 16 6 7.9006 -5.4800 -0.6370 17 6 7.4868 -4.0679 -0.2089 18 1 8.0090 -3.8017 0.7102 19 6 7.8522 -3.0883 -1.2941 20 6 7.0392 -2.9511 -2.4037 21 6 7.3722 -2.0493 -3.3971 22 6 8.5228 -1.2914 -3.2853 23 6 9.3385 -1.4325 -2.1782 24 6 9.0033 -2.3310 -1.1827 25 1 -0.4849 0.8400 0.0004 26 1 3.8786 -0.6821 -0.8838 27 1 3.8711 -0.6785 0.8962 28 1 3.6545 -3.1486 0.9003 29 1 3.6618 -3.1522 -0.8796 30 1 5.9188 -2.1245 -0.8715 31 1 5.9108 -2.1211 0.9084 32 1 6.2958 -4.4019 2.0676 33 1 4.6137 -4.4610 1.4930 34 1 5.1465 -6.5406 0.2138 35 1 5.4408 -6.7451 1.9590 36 1 7.3515 -5.7663 -1.5340 37 1 8.9719 -5.5029 -0.8370 38 1 6.1425 -3.5462 -2.4930 39 1 6.7348 -1.9389 -4.2620 40 1 8.7844 -0.5888 -4.0627 41 1 10.2373 -0.8400 -2.0907 42 1 9.6407 -2.4415 -0.3179 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000115559770.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:58:07 Heat of formation + Delta-G solvation = 11.055178 kcal Electronic energy + Delta-G solvation = -21258.300699 eV Core-core repulsion = 18328.376998 eV Total energy + Delta-G solvation = -2929.923701 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 291.135 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.05626 -38.78748 -35.98039 -34.22741 -33.57621 -31.85495 -31.14851 -30.34034 -27.99965 -24.97905 -24.50249 -23.55218 -22.92965 -21.63651 -21.03963 -18.91176 -18.23410 -17.29929 -16.97626 -16.48172 -16.14811 -16.01184 -15.83445 -15.31862 -15.18217 -14.90698 -14.66134 -14.44086 -14.17813 -13.91255 -13.74049 -13.48155 -13.38349 -13.08610 -12.74465 -12.63484 -12.48783 -12.40417 -11.88498 -11.87485 -11.69569 -11.56069 -11.35599 -11.22951 -10.78950 -10.71549 -9.77608 -9.56863 -9.41340 -8.71496 -8.29989 -6.33764 0.38914 0.52997 0.80784 1.34364 1.35862 1.47805 1.50752 2.35075 2.64490 2.89784 3.05471 3.65607 3.80665 3.90872 3.97842 4.07178 4.17155 4.18473 4.21476 4.31377 4.35260 4.42673 4.48816 4.61449 4.63521 4.68480 4.74742 4.83455 4.86757 4.96477 4.97854 5.08532 5.12109 5.19879 5.47719 5.55564 5.59853 5.63644 5.66278 5.67058 5.96687 6.08946 6.15116 6.29088 6.74266 7.30906 8.86949 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.013274 B = 0.005105 C = 0.003916 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2108.841806 B = 5483.322233 C = 7147.547090 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.952 5.952 2 C 0.005 3.995 3 Si 0.948 3.052 4 H -0.266 1.266 5 H -0.283 1.283 6 H -0.249 1.249 7 C -0.530 4.530 8 H 0.032 0.968 9 C -0.007 4.007 10 C -0.086 4.086 11 C 0.063 3.937 12 N -0.546 5.546 13 C 0.051 3.949 14 C -0.065 4.065 15 S -0.293 6.293 16 C -0.052 4.052 17 C 0.133 3.867 18 H 0.060 0.940 19 C -0.091 4.091 20 C -0.104 4.104 21 C -0.136 4.136 22 C -0.123 4.123 23 C -0.125 4.125 24 C -0.119 4.119 25 H 0.266 0.734 26 H 0.016 0.984 27 H 0.015 0.985 28 H 0.050 0.950 29 H 0.050 0.950 30 H 0.087 0.913 31 H 0.026 0.974 32 H 0.048 0.952 33 H 0.089 0.911 34 H 0.089 0.911 35 H 0.122 0.878 36 H 0.088 0.912 37 H 0.119 0.881 38 H 0.119 0.881 39 H 0.129 0.871 40 H 0.140 0.860 41 H 0.144 0.856 42 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.332 -7.576 -2.606 23.725 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.592 5.592 2 C -0.192 4.192 3 Si 0.772 3.228 4 H -0.191 1.191 5 H -0.209 1.209 6 H -0.172 1.172 7 C -0.568 4.568 8 H 0.050 0.950 9 C -0.045 4.045 10 C -0.124 4.124 11 C -0.064 4.064 12 N -0.271 5.271 13 C -0.078 4.078 14 C -0.213 4.213 15 S -0.065 6.065 16 C -0.201 4.201 17 C 0.023 3.977 18 H 0.078 0.922 19 C -0.093 4.093 20 C -0.122 4.122 21 C -0.154 4.154 22 C -0.141 4.141 23 C -0.143 4.143 24 C -0.137 4.137 25 H 0.075 0.925 26 H 0.034 0.966 27 H 0.034 0.966 28 H 0.069 0.931 29 H 0.069 0.931 30 H 0.105 0.895 31 H 0.045 0.955 32 H 0.067 0.933 33 H 0.107 0.893 34 H 0.108 0.892 35 H 0.140 0.860 36 H 0.106 0.894 37 H 0.137 0.863 38 H 0.137 0.863 39 H 0.147 0.853 40 H 0.158 0.842 41 H 0.162 0.838 42 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 22.636 -8.549 -2.455 24.320 hybrid contribution -0.989 1.888 0.065 2.132 sum 21.646 -6.661 -2.390 22.774 Atomic orbital electron populations 1.70068 1.08278 1.28118 1.52782 1.25997 0.95570 1.03424 0.94161 0.85684 0.79451 0.78423 0.79260 1.19075 1.20911 1.17227 1.21473 0.92064 0.93044 1.50179 0.95011 1.19452 0.93881 0.95023 0.96164 1.21308 0.93427 0.96779 1.00862 1.22225 0.95089 0.87879 1.01197 1.61176 1.12466 1.16288 1.37186 1.22313 1.02386 0.92735 0.90353 1.23507 0.93663 0.97788 1.06342 1.86862 1.16846 1.54291 1.48503 1.23506 1.05261 0.93198 0.98127 1.20648 0.87881 0.93113 0.96028 0.92202 1.19702 0.96086 0.97941 0.95618 1.21099 0.99118 0.98588 0.93438 1.21416 0.97808 0.96759 0.99395 1.21471 0.94549 0.99302 0.98767 1.21397 1.00542 0.98509 0.93830 1.21230 0.96390 0.96200 0.99920 0.92513 0.96610 0.96644 0.93107 0.93116 0.89514 0.95529 0.93338 0.89314 0.89249 0.85951 0.89354 0.86261 0.86335 0.85261 0.84212 0.83774 0.84687 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.18 13.96 21.45 0.30 -59.88 16 2 C 0.01 0.30 5.47 84.66 0.46 0.76 16 3 Si 0.95 44.59 27.47 68.60 1.88 46.47 16 4 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 5 H -0.28 -13.03 7.11 99.48 0.71 -12.33 16 6 H -0.25 -10.90 6.54 99.48 0.65 -10.25 16 7 C -0.53 -30.82 9.66 25.60 0.25 -30.57 16 8 H 0.03 2.03 7.99 -2.91 -0.02 2.01 16 9 C -0.01 -0.34 4.04 29.85 0.12 -0.22 16 10 C -0.09 -3.32 5.08 30.59 0.16 -3.17 16 11 C 0.06 1.96 4.28 86.30 0.37 2.33 16 12 N -0.55 -14.30 3.83 -876.63 -3.35 -17.65 16 13 C 0.05 1.25 5.29 86.47 0.46 1.71 16 14 C -0.06 -1.37 6.69 72.06 0.48 -0.89 16 15 S -0.29 -6.40 22.40 -56.49 -1.27 -7.66 16 16 C -0.05 -1.06 5.94 72.06 0.43 -0.63 16 17 C 0.13 2.97 2.10 44.33 0.09 3.07 16 18 H 0.06 1.35 7.77 -2.39 -0.02 1.33 16 19 C -0.09 -2.05 3.67 -19.87 -0.07 -2.12 16 20 C -0.10 -2.53 7.11 22.27 0.16 -2.37 16 21 C -0.14 -3.01 10.05 22.27 0.22 -2.79 16 22 C -0.12 -2.34 10.05 22.27 0.22 -2.11 16 23 C -0.12 -2.23 10.05 22.27 0.22 -2.00 16 24 C -0.12 -2.31 9.67 22.27 0.22 -2.09 16 25 H 0.27 15.66 8.31 -92.71 -0.77 14.89 16 26 H 0.02 0.72 7.58 -2.38 -0.02 0.70 16 27 H 0.02 0.71 7.19 -2.39 -0.02 0.69 16 28 H 0.05 1.97 6.19 -2.38 -0.01 1.96 16 29 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16 30 H 0.09 2.74 4.65 -2.39 -0.01 2.73 16 31 H 0.03 0.84 8.14 -2.39 -0.02 0.82 16 32 H 0.05 1.16 7.91 -2.39 -0.02 1.14 16 33 H 0.09 2.38 5.77 -2.38 -0.01 2.36 16 34 H 0.09 1.99 8.14 -2.39 -0.02 1.97 16 35 H 0.12 2.19 8.14 -2.39 -0.02 2.17 16 36 H 0.09 1.90 8.14 -2.39 -0.02 1.88 16 37 H 0.12 2.06 8.14 -2.38 -0.02 2.04 16 38 H 0.12 3.17 7.60 -2.91 -0.02 3.14 16 39 H 0.13 2.58 8.06 -2.91 -0.02 2.55 16 40 H 0.14 2.01 8.06 -2.91 -0.02 1.99 16 41 H 0.14 1.81 8.06 -2.91 -0.02 1.79 16 42 H 0.14 2.12 8.04 -2.91 -0.02 2.09 16 Total: -1.00 -65.65 339.55 2.28 -63.37 By element: Atomic # 1 Polarization: 15.53 SS G_CDS: 0.93 Total: 16.46 kcal Atomic # 6 Polarization: -44.89 SS G_CDS: 3.79 Total: -41.11 kcal Atomic # 7 Polarization: -74.48 SS G_CDS: -3.05 Total: -77.53 kcal Atomic # 14 Polarization: 44.59 SS G_CDS: 1.88 Total: 46.47 kcal Atomic # 16 Polarization: -6.40 SS G_CDS: -1.27 Total: -7.66 kcal Total: -65.65 2.28 -63.37 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000115559770.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.426 kcal (2) G-P(sol) polarization free energy of solvation -65.650 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.776 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.279 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.371 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.055 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds