Wall clock time and date at job start Tue Mar 31 2020 06:07:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46506 * 109.47299 * 2 1 4 4 C 1.36935 * 119.99198 * 272.13815 * 3 2 1 5 5 H 1.07997 * 120.00711 * 8.56372 * 4 3 2 6 6 C 1.38824 * 119.99470 * 188.56440 * 4 3 2 7 7 N 1.31610 * 119.99982 * 24.80396 * 6 4 3 8 8 Si 1.86793 * 119.99717 * 204.80306 * 6 4 3 9 9 H 1.48501 * 109.47416 * 0.02562 * 8 6 4 10 10 H 1.48499 * 109.47333 * 120.00400 * 8 6 4 11 11 H 1.48507 * 109.47083 * 240.00029 * 8 6 4 12 12 C 1.46490 * 120.00433 * 92.13862 * 3 2 1 13 13 C 1.50699 * 109.47228 * 89.99646 * 12 3 2 14 14 O 1.21270 * 120.00045 * 0.02562 * 13 12 3 15 15 N 1.34782 * 119.99936 * 179.97438 * 13 12 3 16 16 C 1.38437 * 119.99882 * 180.02562 * 15 13 12 17 17 O 1.33995 * 126.01756 * 0.15059 * 16 15 13 18 18 C 1.34404 * 110.95179 * 180.28217 * 17 16 15 19 19 C 1.50700 * 125.20652 * 179.74523 * 18 17 16 20 20 C 1.34025 * 109.58744 * 359.74593 * 18 17 16 21 21 C 1.50697 * 126.94024 * 179.97438 * 20 18 17 22 22 C 1.38526 * 126.01456 * 180.02562 * 16 15 13 23 23 C 1.43202 * 127.31621 * 0.02562 * 22 16 15 24 24 N 8.20141 * 116.38020 * 56.45083 * 2 1 3 25 25 H 1.08997 * 109.46716 * 300.00772 * 1 2 3 26 26 H 1.09001 * 109.46336 * 60.00503 * 1 2 3 27 27 H 1.08996 * 109.46986 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.47386 * 239.99265 * 2 1 3 29 29 H 1.09005 * 109.47056 * 119.99549 * 2 1 3 30 30 H 0.97003 * 120.00335 * 179.97438 * 7 6 4 31 31 H 1.09007 * 109.47073 * 330.00408 * 12 3 2 32 32 H 1.09002 * 109.47191 * 210.00322 * 12 3 2 33 33 H 0.96998 * 119.99936 * 0.02562 * 15 13 12 34 34 H 1.08995 * 109.47363 * 270.00192 * 19 18 17 35 35 H 1.09002 * 109.47513 * 30.00599 * 19 18 17 36 36 H 1.09004 * 109.47325 * 149.99988 * 19 18 17 37 37 H 1.09004 * 109.46978 * 270.01894 * 21 20 18 38 38 H 1.08993 * 109.47139 * 30.01886 * 21 20 18 39 39 H 1.09001 * 109.47281 * 150.01958 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.2049 2.0414 -1.1852 5 1 1.8640 1.5987 -2.1094 6 6 2.8323 3.2797 -1.1986 7 7 3.6605 3.6083 -0.2300 8 14 2.5008 4.4794 -2.5914 9 1 1.5386 3.8747 -3.5473 10 1 1.9276 5.7330 -2.0391 11 1 3.7726 4.7846 -3.2950 12 6 2.3073 2.0561 1.2677 13 6 3.7449 1.8142 1.6495 14 8 4.4580 1.1444 0.9329 15 7 4.2383 2.3430 2.7868 16 6 5.5591 2.1212 3.1372 17 8 6.4504 1.4060 2.4376 18 6 7.6420 1.3828 3.0590 19 6 8.8698 0.6676 2.5570 20 6 7.5711 2.0930 4.1934 21 6 8.6791 2.3232 5.1885 22 6 6.1925 2.6016 4.2716 23 6 5.6246 3.4149 5.3044 24 7 5.1741 4.0605 6.1234 25 1 -0.3633 0.5140 0.8899 26 1 -0.3632 0.5138 -0.8901 27 1 -0.3633 -1.0276 0.0005 28 1 1.8934 -0.5140 -0.8899 29 1 1.8934 -0.5138 0.8901 30 1 4.0992 4.4734 -0.2396 31 1 1.6535 1.6624 2.0461 32 1 2.1360 3.1269 1.1566 33 1 3.6679 2.8790 3.3597 34 1 8.8827 -0.3500 2.9473 35 1 8.8536 0.6386 1.4675 36 1 9.7615 1.1970 2.8930 37 1 8.6628 1.5334 5.9396 38 1 9.6389 2.3138 4.6721 39 1 8.5369 3.2889 5.6736 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000120996993.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:27 Heat of formation + Delta-G solvation = 32.525256 kcal Electronic energy + Delta-G solvation = -23373.436452 eV Core-core repulsion = 19898.150549 eV Total energy + Delta-G solvation = -3475.285903 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.137 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.30886 -38.81733 -36.36290 -35.83892 -34.29587 -33.95147 -32.01193 -31.06718 -29.43873 -28.55578 -27.11659 -25.04908 -23.81547 -23.01766 -21.47050 -20.31832 -18.75942 -18.24283 -17.00530 -16.41436 -16.32007 -16.03548 -15.24021 -14.37837 -14.05444 -13.81607 -13.73796 -13.64010 -13.29858 -13.20946 -13.06883 -13.00528 -12.69357 -12.54313 -12.44216 -12.28775 -12.06143 -11.96841 -11.44749 -11.22044 -11.19210 -10.83736 -10.70170 -10.35819 -10.18714 -10.01034 -9.92055 -9.17070 -9.07519 -8.54510 -7.42417 -7.13188 -5.99294 -3.23373 1.67335 2.17271 2.48153 2.87923 3.32281 3.41481 3.43428 3.64113 3.79187 4.02560 4.28370 4.42326 4.94369 5.06284 5.18536 5.20351 5.28678 5.47414 5.51821 5.65546 5.70103 5.83812 5.85939 5.87900 5.93083 5.99471 6.11821 6.21634 6.39711 6.47284 6.60789 6.73264 6.86536 6.92226 7.03018 7.12503 7.66072 7.81647 7.98033 8.14452 8.97726 9.14428 9.66516 10.08554 11.12628 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.016399 B = 0.004729 C = 0.004582 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1707.053701 B = 5919.834124 C = 6109.619551 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.143 3.857 3 N -0.571 5.571 4 C -0.244 4.244 5 H 0.082 0.918 6 C -0.002 4.002 7 N -0.906 5.906 8 Si 0.906 3.094 9 H -0.278 1.278 10 H -0.289 1.289 11 H -0.293 1.293 12 C 0.168 3.832 13 C 0.515 3.485 14 O -0.477 6.477 15 N -0.639 5.639 16 C 0.368 3.632 17 O -0.146 6.146 18 C -0.030 4.030 19 C -0.067 4.067 20 C -0.119 4.119 21 C -0.081 4.081 22 C -0.228 4.228 23 C 0.303 3.697 24 N -0.452 5.452 25 H 0.044 0.956 26 H 0.054 0.946 27 H 0.040 0.960 28 H 0.048 0.952 29 H 0.037 0.963 30 H 0.256 0.744 31 H 0.048 0.952 32 H 0.112 0.888 33 H 0.421 0.579 34 H 0.078 0.922 35 H 0.077 0.923 36 H 0.086 0.914 37 H 0.069 0.931 38 H 0.070 0.930 39 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.354 -4.990 8.016 10.855 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.016 3.984 3 N -0.290 5.290 4 C -0.372 4.372 5 H 0.099 0.901 6 C -0.199 4.199 7 N -0.553 5.553 8 Si 0.736 3.264 9 H -0.203 1.203 10 H -0.215 1.215 11 H -0.220 1.220 12 C 0.036 3.964 13 C 0.302 3.698 14 O -0.344 6.344 15 N -0.292 5.292 16 C 0.209 3.791 17 O -0.039 6.039 18 C -0.079 4.079 19 C -0.123 4.123 20 C -0.123 4.123 21 C -0.137 4.137 22 C -0.239 4.239 23 C -0.010 4.010 24 N -0.131 5.131 25 H 0.064 0.936 26 H 0.073 0.927 27 H 0.059 0.941 28 H 0.067 0.933 29 H 0.055 0.945 30 H 0.066 0.934 31 H 0.066 0.934 32 H 0.130 0.870 33 H 0.260 0.740 34 H 0.096 0.904 35 H 0.096 0.904 36 H 0.105 0.895 37 H 0.088 0.912 38 H 0.088 0.912 39 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 5.111 -4.580 8.274 10.750 hybrid contribution -0.018 0.991 -0.716 1.222 sum 5.093 -3.589 7.558 9.795 Atomic orbital electron populations 1.22295 0.99123 0.99368 1.01635 1.20797 0.92112 0.85948 0.99506 1.44051 1.73180 1.09839 1.01934 1.19340 1.32412 0.99100 0.86395 0.90064 1.24693 0.97290 0.99471 0.98455 1.69790 1.28156 1.21996 1.35324 0.86143 0.77673 0.81194 0.81351 1.20327 1.21539 1.21974 1.20805 0.87267 1.00967 0.87380 1.23368 0.93455 0.76305 0.76703 1.90613 1.59549 1.37120 1.47102 1.44350 1.05023 1.53283 1.26592 1.19097 0.84172 0.88968 0.86872 1.84041 1.18188 1.57515 1.44139 1.21719 0.86180 1.05804 0.94173 1.20249 0.90151 0.99306 1.02632 1.20579 0.93060 1.01239 0.97402 1.20169 0.94791 1.02076 0.96684 1.16330 0.94907 1.15697 0.96993 1.24362 0.92982 0.91642 0.92004 1.81231 1.08343 1.12469 1.11038 0.93649 0.92712 0.94091 0.93331 0.94463 0.93361 0.93435 0.87024 0.74017 0.90370 0.90375 0.89541 0.91200 0.91155 0.91716 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.71 10.23 37.16 0.38 -2.33 16 2 C 0.14 2.81 6.39 -4.04 -0.03 2.79 16 3 N -0.57 -13.30 2.02 -174.60 -0.35 -13.65 16 4 C -0.24 -6.31 9.70 -15.06 -0.15 -6.46 16 5 H 0.08 2.09 7.94 -52.49 -0.42 1.68 16 6 C 0.00 -0.06 4.90 -17.43 -0.09 -0.14 16 7 N -0.91 -24.32 8.95 55.49 0.50 -23.83 16 8 Si 0.91 21.08 29.62 -169.99 -5.04 16.04 16 9 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 10 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 11 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 12 C 0.17 3.56 5.42 -5.20 -0.03 3.53 16 13 C 0.51 11.34 5.85 -10.98 -0.06 11.28 16 14 O -0.48 -12.46 14.93 -16.21 -0.24 -12.71 16 15 N -0.64 -11.78 5.38 -11.43 -0.06 -11.84 16 16 C 0.37 6.75 7.83 -14.46 -0.11 6.64 16 17 O -0.15 -2.82 8.86 -15.52 -0.14 -2.96 16 18 C -0.03 -0.45 7.26 -35.79 -0.26 -0.71 16 19 C -0.07 -0.70 10.19 36.01 0.37 -0.34 16 20 C -0.12 -1.68 6.36 -102.49 -0.65 -2.33 16 21 C -0.08 -0.83 10.12 36.00 0.36 -0.46 16 22 C -0.23 -3.69 6.23 -104.25 -0.65 -4.34 16 23 C 0.30 4.92 15.57 -22.47 -0.35 4.57 16 24 N -0.45 -7.80 18.54 41.84 0.78 -7.02 16 25 H 0.04 0.72 8.14 -51.93 -0.42 0.29 16 26 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 27 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.05 0.99 8.06 -51.93 -0.42 0.57 16 29 H 0.04 0.70 8.06 -51.93 -0.42 0.28 16 30 H 0.26 6.84 8.31 -40.82 -0.34 6.50 16 31 H 0.05 0.84 8.07 -51.92 -0.42 0.42 16 32 H 0.11 2.53 6.30 -51.93 -0.33 2.21 16 33 H 0.42 6.49 8.55 -40.82 -0.35 6.14 16 34 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 36 H 0.09 0.68 7.10 -51.93 -0.37 0.31 16 37 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 38 H 0.07 0.57 7.11 -51.93 -0.37 0.20 16 39 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 LS Contribution 342.18 15.07 5.16 5.16 Total: -1.00 -31.73 342.18 -5.84 -37.58 By element: Atomic # 1 Polarization: 6.72 SS G_CDS: -5.18 Total: 1.54 kcal Atomic # 6 Polarization: 12.95 SS G_CDS: -1.26 Total: 11.69 kcal Atomic # 7 Polarization: -57.20 SS G_CDS: 0.86 Total: -56.34 kcal Atomic # 8 Polarization: -15.29 SS G_CDS: -0.38 Total: -15.67 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.04 Total: 16.04 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -31.73 -5.84 -37.58 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000120996993.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.100 kcal (2) G-P(sol) polarization free energy of solvation -31.732 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.369 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.844 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.575 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.525 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds