Wall clock time and date at job start Tue Mar 31 2020 06:07:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46506 * 109.47299 * 2 1 4 4 C 1.36935 * 119.99198 * 272.13815 * 3 2 1 5 5 H 1.07997 * 120.00711 * 8.56372 * 4 3 2 6 6 C 1.38824 * 119.99470 * 188.56440 * 4 3 2 7 7 N 1.31610 * 119.99982 * 24.80396 * 6 4 3 8 8 Si 1.86793 * 119.99717 * 204.80306 * 6 4 3 9 9 H 1.48501 * 109.47416 * 0.02562 * 8 6 4 10 10 H 1.48499 * 109.47333 * 120.00400 * 8 6 4 11 11 H 1.48507 * 109.47083 * 240.00029 * 8 6 4 12 12 C 1.46490 * 120.00433 * 92.13862 * 3 2 1 13 13 C 1.50699 * 109.47228 * 89.99646 * 12 3 2 14 14 O 1.21270 * 120.00045 * 0.02562 * 13 12 3 15 15 N 1.34782 * 119.99936 * 179.97438 * 13 12 3 16 16 C 1.38437 * 119.99882 * 180.02562 * 15 13 12 17 17 O 1.33995 * 126.01756 * 0.15059 * 16 15 13 18 18 C 1.34404 * 110.95179 * 180.28217 * 17 16 15 19 19 C 1.50700 * 125.20652 * 179.74523 * 18 17 16 20 20 C 1.34025 * 109.58744 * 359.74593 * 18 17 16 21 21 C 1.50697 * 126.94024 * 179.97438 * 20 18 17 22 22 C 1.38526 * 126.01456 * 180.02562 * 16 15 13 23 23 C 1.43202 * 127.31621 * 0.02562 * 22 16 15 24 24 N 8.20141 * 116.38020 * 56.45083 * 2 1 3 25 25 H 1.08997 * 109.46716 * 300.00772 * 1 2 3 26 26 H 1.09001 * 109.46336 * 60.00503 * 1 2 3 27 27 H 1.08996 * 109.46986 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.47386 * 239.99265 * 2 1 3 29 29 H 1.09005 * 109.47056 * 119.99549 * 2 1 3 30 30 H 0.97003 * 120.00335 * 179.97438 * 7 6 4 31 31 H 1.09007 * 109.47073 * 330.00408 * 12 3 2 32 32 H 1.09002 * 109.47191 * 210.00322 * 12 3 2 33 33 H 0.96998 * 119.99936 * 0.02562 * 15 13 12 34 34 H 1.08995 * 109.47363 * 270.00192 * 19 18 17 35 35 H 1.09002 * 109.47513 * 30.00599 * 19 18 17 36 36 H 1.09004 * 109.47325 * 149.99988 * 19 18 17 37 37 H 1.09004 * 109.46978 * 270.01894 * 21 20 18 38 38 H 1.08993 * 109.47139 * 30.01886 * 21 20 18 39 39 H 1.09001 * 109.47281 * 150.01958 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.2049 2.0414 -1.1852 5 1 1.8640 1.5987 -2.1094 6 6 2.8323 3.2797 -1.1986 7 7 3.6605 3.6083 -0.2300 8 14 2.5008 4.4794 -2.5914 9 1 1.5386 3.8747 -3.5473 10 1 1.9276 5.7330 -2.0391 11 1 3.7726 4.7846 -3.2950 12 6 2.3073 2.0561 1.2677 13 6 3.7449 1.8142 1.6495 14 8 4.4580 1.1444 0.9329 15 7 4.2383 2.3430 2.7868 16 6 5.5591 2.1212 3.1372 17 8 6.4504 1.4060 2.4376 18 6 7.6420 1.3828 3.0590 19 6 8.8698 0.6676 2.5570 20 6 7.5711 2.0930 4.1934 21 6 8.6791 2.3232 5.1885 22 6 6.1925 2.6016 4.2716 23 6 5.6246 3.4149 5.3044 24 7 5.1741 4.0605 6.1234 25 1 -0.3633 0.5140 0.8899 26 1 -0.3632 0.5138 -0.8901 27 1 -0.3633 -1.0276 0.0005 28 1 1.8934 -0.5140 -0.8899 29 1 1.8934 -0.5138 0.8901 30 1 4.0992 4.4734 -0.2396 31 1 1.6535 1.6624 2.0461 32 1 2.1360 3.1269 1.1566 33 1 3.6679 2.8790 3.3597 34 1 8.8827 -0.3500 2.9473 35 1 8.8536 0.6386 1.4675 36 1 9.7615 1.1970 2.8930 37 1 8.6628 1.5334 5.9396 38 1 9.6389 2.3138 4.6721 39 1 8.5369 3.2889 5.6736 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000120996993.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:26 Heat of formation + Delta-G solvation = 13.773149 kcal Electronic energy + Delta-G solvation = -23374.249604 eV Core-core repulsion = 19898.150549 eV Total energy + Delta-G solvation = -3476.099055 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.137 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -43.60924 -40.47516 -37.75222 -37.49963 -35.86003 -35.13393 -33.82774 -32.28492 -31.01761 -29.58949 -28.76441 -26.29524 -25.43206 -24.38431 -22.97559 -21.94234 -20.13780 -19.67883 -18.66859 -17.78003 -17.67641 -17.66240 -17.02956 -15.82034 -15.74596 -15.45636 -15.22450 -14.90948 -14.65899 -14.58427 -14.21225 -14.15574 -14.01209 -13.73790 -13.59562 -13.51946 -13.38018 -13.20222 -12.88279 -12.85782 -12.58328 -12.33437 -12.28288 -12.11775 -11.84706 -11.76067 -11.59448 -10.95196 -10.44932 -10.25420 -8.96967 -8.72435 -7.95299 -5.19740 0.26691 1.04967 1.20452 1.45869 1.50277 1.54648 1.58898 2.12068 2.42932 2.49131 2.61563 2.97145 3.24538 3.56560 3.85268 3.99420 4.10655 4.32672 4.39603 4.52272 4.58243 4.68173 4.75841 4.80197 4.89522 4.91680 4.95765 5.05030 5.08442 5.14138 5.19120 5.27528 5.48131 5.60235 5.62948 5.64785 5.84491 6.20934 6.46806 6.60551 7.07105 7.47442 7.81849 8.19061 9.13302 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.016399 B = 0.004729 C = 0.004582 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1707.053701 B = 5919.834124 C = 6109.619551 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.138 3.862 3 N -0.588 5.588 4 C -0.250 4.250 5 H 0.075 0.925 6 C -0.048 4.048 7 N -0.923 5.923 8 Si 0.962 3.038 9 H -0.270 1.270 10 H -0.288 1.288 11 H -0.306 1.306 12 C 0.166 3.834 13 C 0.521 3.479 14 O -0.527 6.527 15 N -0.634 5.634 16 C 0.333 3.667 17 O -0.179 6.179 18 C -0.039 4.039 19 C -0.067 4.067 20 C -0.117 4.117 21 C -0.079 4.079 22 C -0.215 4.215 23 C 0.314 3.686 24 N -0.464 5.464 25 H 0.053 0.947 26 H 0.041 0.959 27 H 0.070 0.930 28 H 0.034 0.966 29 H 0.045 0.955 30 H 0.247 0.753 31 H 0.086 0.914 32 H 0.096 0.904 33 H 0.433 0.567 34 H 0.098 0.902 35 H 0.067 0.933 36 H 0.120 0.880 37 H 0.087 0.913 38 H 0.097 0.903 39 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.990 -5.369 9.327 12.317 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.013 3.987 3 N -0.307 5.307 4 C -0.380 4.380 5 H 0.093 0.907 6 C -0.242 4.242 7 N -0.570 5.570 8 Si 0.792 3.208 9 H -0.195 1.195 10 H -0.214 1.214 11 H -0.234 1.234 12 C 0.035 3.965 13 C 0.309 3.691 14 O -0.398 6.398 15 N -0.287 5.287 16 C 0.176 3.824 17 O -0.073 6.073 18 C -0.087 4.087 19 C -0.123 4.123 20 C -0.121 4.121 21 C -0.135 4.135 22 C -0.226 4.226 23 C 0.002 3.998 24 N -0.143 5.143 25 H 0.072 0.928 26 H 0.061 0.939 27 H 0.088 0.912 28 H 0.052 0.948 29 H 0.063 0.937 30 H 0.056 0.944 31 H 0.104 0.896 32 H 0.113 0.887 33 H 0.274 0.726 34 H 0.116 0.884 35 H 0.086 0.914 36 H 0.138 0.862 37 H 0.106 0.894 38 H 0.116 0.884 39 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 5.724 -4.957 9.635 12.254 hybrid contribution -0.134 1.047 -1.034 1.477 sum 5.589 -3.910 8.601 10.978 Atomic orbital electron populations 1.22121 0.96204 1.01232 1.01403 1.20953 0.94211 0.84325 0.99193 1.44261 1.73571 1.11131 1.01786 1.19514 1.31609 0.99492 0.87343 0.90711 1.25287 0.97646 1.00731 1.00583 1.69954 1.28930 1.21520 1.36597 0.85279 0.76763 0.79467 0.79282 1.19506 1.21423 1.23400 1.20834 0.87672 1.00182 0.87812 1.23273 0.93478 0.75501 0.76816 1.90580 1.60725 1.39495 1.49014 1.43832 1.05738 1.53193 1.25988 1.19208 0.84185 0.90942 0.88025 1.84019 1.19745 1.58008 1.45571 1.22669 0.85878 1.05899 0.94291 1.20505 0.89242 1.00486 1.02039 1.21040 0.92861 1.00244 0.97922 1.20320 0.94415 1.02508 0.96289 1.16527 0.95862 1.14435 0.95813 1.24285 0.92518 0.91323 0.91693 1.81245 1.08753 1.12735 1.11547 0.92799 0.93947 0.91151 0.94773 0.93693 0.94362 0.89583 0.88654 0.72611 0.88394 0.91450 0.86202 0.89412 0.88397 0.91965 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.70 10.23 71.98 0.74 -3.96 16 2 C 0.14 5.41 6.39 86.38 0.55 5.96 16 3 N -0.59 -27.56 2.02 -706.32 -1.43 -28.99 16 4 C -0.25 -13.14 9.70 84.04 0.82 -12.33 16 5 H 0.08 3.92 7.94 -2.91 -0.02 3.90 16 6 C -0.05 -2.55 4.90 84.87 0.42 -2.13 16 7 N -0.92 -50.71 8.95 21.65 0.19 -50.52 16 8 Si 0.96 44.14 29.62 68.60 2.03 46.17 16 9 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 10 H -0.29 -13.01 7.11 99.48 0.71 -12.30 16 11 H -0.31 -14.59 7.11 99.48 0.71 -13.89 16 12 C 0.17 7.09 5.42 85.63 0.46 7.56 16 13 C 0.52 23.43 5.85 87.66 0.51 23.95 16 14 O -0.53 -28.43 14.93 17.82 0.27 -28.16 16 15 N -0.63 -23.74 5.38 -418.89 -2.25 -25.99 16 16 C 0.33 12.37 7.83 83.72 0.66 13.02 16 17 O -0.18 -7.04 8.86 20.30 0.18 -6.86 16 18 C -0.04 -1.13 7.26 24.73 0.18 -0.95 16 19 C -0.07 -1.25 10.19 71.24 0.73 -0.53 16 20 C -0.12 -3.08 6.36 -18.48 -0.12 -3.20 16 21 C -0.08 -1.35 10.12 71.23 0.72 -0.63 16 22 C -0.22 -6.81 6.23 -19.62 -0.12 -6.93 16 23 C 0.31 9.88 15.57 88.33 1.38 11.25 16 24 N -0.46 -15.43 18.54 19.00 0.35 -15.08 16 25 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 26 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 27 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 28 H 0.03 1.40 8.06 -2.39 -0.02 1.38 16 29 H 0.04 1.66 8.06 -2.38 -0.02 1.64 16 30 H 0.25 13.56 8.31 -92.71 -0.77 12.79 16 31 H 0.09 2.93 8.07 -2.38 -0.02 2.91 16 32 H 0.10 4.40 6.30 -2.39 -0.02 4.38 16 33 H 0.43 13.48 8.55 -92.71 -0.79 12.68 16 34 H 0.10 1.47 8.14 -2.39 -0.02 1.45 16 35 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 36 H 0.12 1.42 7.10 -2.38 -0.02 1.40 16 37 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 38 H 0.10 1.16 7.11 -2.39 -0.02 1.14 16 39 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 Total: -1.00 -70.17 342.18 6.55 -63.62 By element: Atomic # 1 Polarization: 14.45 SS G_CDS: 0.29 Total: 14.74 kcal Atomic # 6 Polarization: 24.16 SS G_CDS: 6.91 Total: 31.07 kcal Atomic # 7 Polarization: -117.44 SS G_CDS: -3.14 Total: -120.58 kcal Atomic # 8 Polarization: -35.47 SS G_CDS: 0.45 Total: -35.02 kcal Atomic # 14 Polarization: 44.14 SS G_CDS: 2.03 Total: 46.17 kcal Total: -70.17 6.55 -63.62 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000120996993.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.394 kcal (2) G-P(sol) polarization free energy of solvation -70.169 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.225 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.548 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.621 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.773 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds