Wall clock time and date at job start Tue Mar 31 2020 06:07:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46494 * 109.47284 * 2 1 4 4 C 1.46493 * 120.00050 * 274.46805 * 3 2 1 5 5 C 1.50699 * 109.47256 * 264.85308 * 4 3 2 6 6 H 1.08003 * 120.00127 * 359.97438 * 5 4 3 7 7 C 1.37875 * 120.00123 * 180.02562 * 5 4 3 8 8 N 1.31512 * 120.00198 * 359.97438 * 7 5 4 9 9 Si 1.86803 * 120.00215 * 179.97438 * 7 5 4 10 10 H 1.48506 * 109.47057 * 359.97438 * 9 7 5 11 11 H 1.48505 * 109.47176 * 119.99516 * 9 7 5 12 12 H 1.48501 * 109.47471 * 239.99814 * 9 7 5 13 13 C 1.34779 * 119.99894 * 94.46657 * 3 2 1 14 14 O 1.21355 * 120.00056 * 354.64693 * 13 3 2 15 15 C 1.49358 * 119.99782 * 174.64358 * 13 3 2 16 16 O 1.21379 * 120.00058 * 354.43274 * 15 13 3 17 17 N 1.34779 * 119.99771 * 174.43799 * 15 13 3 18 18 C 1.39752 * 119.99763 * 185.01762 * 17 15 13 19 19 C 1.39335 * 120.49386 * 35.09269 * 18 17 15 20 20 C 1.38489 * 118.35743 * 179.72662 * 19 18 17 21 21 C 1.38285 * 119.24145 * 0.24926 * 20 19 18 22 22 C 1.50701 * 119.53810 * 179.97438 * 21 20 19 23 23 N 1.31862 * 120.92914 * 0.02562 * 21 20 19 24 24 C 1.31811 * 121.80301 * 0.02562 * 23 21 20 25 25 H 1.09004 * 109.47383 * 299.99956 * 1 2 3 26 26 H 1.09000 * 109.47416 * 59.99914 * 1 2 3 27 27 H 1.08999 * 109.47330 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47349 * 239.99287 * 2 1 3 29 29 H 1.09012 * 109.47084 * 120.00296 * 2 1 3 30 30 H 1.09000 * 109.47405 * 24.85146 * 4 3 2 31 31 H 1.09000 * 109.47306 * 144.84979 * 4 3 2 32 32 H 0.96999 * 120.00326 * 179.97438 * 8 7 5 33 33 H 0.96993 * 120.00170 * 5.01137 * 17 15 13 34 34 H 1.08003 * 120.82388 * 0.02562 * 19 18 17 35 35 H 1.07999 * 120.38297 * 180.23467 * 20 19 18 36 36 H 1.08996 * 109.46731 * 89.99757 * 22 21 20 37 37 H 1.09001 * 109.47092 * 209.99962 * 22 21 20 38 38 H 1.09000 * 109.46741 * 330.00160 * 22 21 20 39 39 H 1.08000 * 119.67068 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3811 0.0000 4 6 2.1693 2.1047 -1.2648 5 6 3.5926 1.9849 -1.7452 6 1 4.3129 1.4261 -1.1661 7 6 3.9757 2.5896 -2.9236 8 7 3.0988 3.2705 -3.6286 9 14 5.7402 2.4418 -3.5188 10 1 6.5223 1.6300 -2.5520 11 1 5.7602 1.7827 -4.8494 12 1 6.3409 3.7955 -3.6279 13 6 2.3286 1.9862 1.1637 14 8 2.1125 1.4232 2.2168 15 6 2.9386 3.3495 1.1571 16 8 3.2480 3.8709 0.1055 17 7 3.1456 4.0008 2.3188 18 6 3.6181 5.3159 2.3079 19 6 3.2253 6.2001 1.3053 20 6 3.7159 7.4947 1.3406 21 6 4.5765 7.8634 2.3583 22 6 5.1148 9.2703 2.4029 23 7 4.9336 7.0010 3.2897 24 6 4.4912 5.7594 3.2931 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5139 0.8901 30 1 1.4974 1.6784 -2.0097 31 1 1.9241 3.1559 -1.1136 32 1 3.3684 3.6963 -4.4575 33 1 2.9665 3.5567 3.1623 34 1 2.5510 5.8851 0.5226 35 1 3.4298 8.2082 0.5820 36 1 4.4424 9.8982 2.9874 37 1 6.1022 9.2671 2.8646 38 1 5.1891 9.6632 1.3889 39 1 4.8058 5.0819 4.0731 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000123864334.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:09 Heat of formation + Delta-G solvation = -21.054230 kcal Electronic energy + Delta-G solvation = -23329.568593 eV Core-core repulsion = 19851.959309 eV Total energy + Delta-G solvation = -3477.609284 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.137 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.81093 -39.71092 -37.99050 -35.89563 -34.69510 -32.68986 -32.21502 -31.52073 -30.54370 -27.46117 -27.02089 -24.73338 -23.55724 -23.11610 -22.48863 -21.03844 -19.35173 -17.70021 -16.93418 -16.65833 -16.29827 -15.93507 -15.77943 -15.13600 -14.76900 -14.40345 -14.28487 -13.91063 -13.68275 -13.46695 -13.06689 -12.99091 -12.50919 -12.37815 -12.23214 -12.01973 -11.99340 -11.71098 -11.58979 -11.00225 -10.86739 -10.71645 -10.61068 -10.42094 -10.01482 -9.71145 -9.59611 -9.44263 -8.73939 -8.37686 -8.08340 -7.90777 -6.06729 -4.08042 1.07682 1.39734 2.09885 2.79107 3.28170 3.36225 3.39860 3.69781 3.95454 4.00867 4.40463 4.44351 4.80428 4.94469 5.00280 5.10538 5.30450 5.37567 5.48715 5.55871 5.61998 5.64466 5.69323 5.75545 5.88357 6.11495 6.16525 6.23770 6.29483 6.41285 6.51142 6.62814 6.88471 7.24933 7.29272 7.46086 7.82515 8.01606 8.03540 8.13985 8.26531 8.59261 8.91344 9.54682 11.02363 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.012552 B = 0.005790 C = 0.004344 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2230.161468 B = 4834.624850 C = 6443.458460 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.111 3.889 3 N -0.558 5.558 4 C 0.231 3.769 5 C -0.510 4.510 6 H 0.054 0.946 7 C 0.069 3.931 8 N -0.892 5.892 9 Si 0.893 3.107 10 H -0.275 1.275 11 H -0.284 1.284 12 H -0.284 1.284 13 C 0.508 3.492 14 O -0.560 6.560 15 C 0.486 3.514 16 O -0.426 6.426 17 N -0.660 5.660 18 C 0.106 3.894 19 C -0.073 4.073 20 C -0.147 4.147 21 C 0.098 3.902 22 C -0.098 4.098 23 N -0.469 5.469 24 C 0.077 3.923 25 H 0.054 0.946 26 H 0.059 0.941 27 H 0.061 0.939 28 H 0.083 0.917 29 H 0.076 0.924 30 H 0.034 0.966 31 H 0.059 0.941 32 H 0.261 0.739 33 H 0.418 0.582 34 H 0.148 0.852 35 H 0.137 0.863 36 H 0.074 0.926 37 H 0.074 0.926 38 H 0.073 0.927 39 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.042 4.875 10.214 11.501 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.012 4.012 3 N -0.288 5.288 4 C 0.113 3.887 5 C -0.549 4.549 6 H 0.072 0.928 7 C -0.133 4.133 8 N -0.531 5.531 9 Si 0.721 3.279 10 H -0.200 1.200 11 H -0.210 1.210 12 H -0.210 1.210 13 C 0.290 3.710 14 O -0.442 6.442 15 C 0.267 3.733 16 O -0.292 6.292 17 N -0.310 5.310 18 C 0.009 3.991 19 C -0.101 4.101 20 C -0.168 4.168 21 C -0.040 4.040 22 C -0.156 4.156 23 N -0.178 5.178 24 C -0.083 4.083 25 H 0.073 0.927 26 H 0.078 0.922 27 H 0.080 0.920 28 H 0.102 0.898 29 H 0.095 0.905 30 H 0.052 0.948 31 H 0.077 0.923 32 H 0.071 0.929 33 H 0.255 0.745 34 H 0.165 0.835 35 H 0.155 0.845 36 H 0.092 0.908 37 H 0.092 0.908 38 H 0.092 0.908 39 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -1.424 5.259 10.344 11.691 hybrid contribution 0.377 -0.629 -0.845 1.119 sum -1.048 4.630 9.498 10.619 Atomic orbital electron populations 1.22102 0.96172 1.01652 1.02266 1.21444 0.93996 0.82667 1.03100 1.48300 1.58836 1.13521 1.08163 1.19875 0.97783 0.93073 0.78015 1.21207 0.94779 1.32634 1.06280 0.92751 1.24782 0.97225 0.94810 0.96464 1.69913 1.33922 1.34064 1.15216 0.86532 0.85087 0.77868 0.78439 1.19951 1.21022 1.20966 1.19703 0.80257 0.86460 0.84612 1.90653 1.55903 1.66596 1.31012 1.20528 0.81156 0.87719 0.83906 1.91043 1.42968 1.66348 1.28865 1.43190 1.65846 1.11572 1.10345 1.18771 0.96920 0.85014 0.98439 1.21685 0.98440 0.91890 0.98125 1.21867 0.98804 0.96548 0.99547 1.21197 0.95424 0.96316 0.91090 1.20636 1.01662 0.90469 1.02784 1.67433 1.23056 1.02322 1.25001 1.22537 0.93715 0.93199 0.98839 0.92699 0.92209 0.91983 0.89832 0.90532 0.94762 0.92336 0.92903 0.74485 0.83478 0.84537 0.90777 0.90751 0.90843 0.82582 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.40 10.24 37.15 0.38 -2.02 16 2 C 0.11 1.91 6.11 -4.05 -0.02 1.89 16 3 N -0.56 -11.58 2.47 -175.61 -0.43 -12.01 16 4 C 0.23 5.60 4.77 -5.20 -0.02 5.57 16 5 C -0.51 -13.72 7.73 -34.44 -0.27 -13.98 16 6 H 0.05 1.50 7.81 -52.48 -0.41 1.09 16 7 C 0.07 1.91 5.46 -17.82 -0.10 1.82 16 8 N -0.89 -25.46 13.29 55.43 0.74 -24.72 16 9 Si 0.89 21.71 29.54 -169.99 -5.02 16.69 16 10 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 11 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 12 H -0.28 -6.96 7.11 56.52 0.40 -6.55 16 13 C 0.51 10.30 7.68 -11.63 -0.09 10.21 16 14 O -0.56 -11.26 16.05 5.49 0.09 -11.17 16 15 C 0.49 9.60 7.44 -11.63 -0.09 9.51 16 16 O -0.43 -9.85 10.00 5.47 0.05 -9.79 16 17 N -0.66 -10.49 5.33 -10.20 -0.05 -10.55 16 18 C 0.11 1.65 6.26 -83.59 -0.52 1.13 16 19 C -0.07 -1.19 8.76 -39.08 -0.34 -1.53 16 20 C -0.15 -2.05 9.73 -39.47 -0.38 -2.43 16 21 C 0.10 1.32 6.78 -82.56 -0.56 0.76 16 22 C -0.10 -0.96 10.17 36.01 0.37 -0.60 16 23 N -0.47 -6.88 10.26 -9.30 -0.10 -6.98 16 24 C 0.08 1.09 11.13 -17.31 -0.19 0.90 16 25 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 26 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 27 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 28 H 0.08 1.42 8.11 -51.93 -0.42 1.00 16 29 H 0.08 1.28 7.37 -51.92 -0.38 0.90 16 30 H 0.03 0.86 8.03 -51.93 -0.42 0.44 16 31 H 0.06 1.53 5.93 -51.93 -0.31 1.22 16 32 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 33 H 0.42 5.62 8.30 -40.82 -0.34 5.28 16 34 H 0.15 2.59 6.65 -52.48 -0.35 2.24 16 35 H 0.14 1.56 8.06 -52.49 -0.42 1.14 16 36 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 37 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.07 0.61 8.08 -51.93 -0.42 0.19 16 39 H 0.16 1.78 8.06 -52.49 -0.42 1.35 16 LS Contribution 335.93 15.07 5.06 5.06 Total: -1.00 -31.43 335.93 -6.65 -38.08 By element: Atomic # 1 Polarization: 9.30 SS G_CDS: -5.14 Total: 4.16 kcal Atomic # 6 Polarization: 13.08 SS G_CDS: -1.84 Total: 11.23 kcal Atomic # 7 Polarization: -54.41 SS G_CDS: 0.15 Total: -54.26 kcal Atomic # 8 Polarization: -21.10 SS G_CDS: 0.14 Total: -20.96 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.69 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -31.43 -6.65 -38.08 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000123864334.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.022 kcal (2) G-P(sol) polarization free energy of solvation -31.429 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.407 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.648 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.076 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.054 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds