Wall clock time and date at job start Tue Mar 31 2020 06:07:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46494 * 109.47284 * 2 1 4 4 C 1.46493 * 120.00050 * 274.46805 * 3 2 1 5 5 C 1.50699 * 109.47256 * 264.85308 * 4 3 2 6 6 H 1.08003 * 120.00127 * 359.97438 * 5 4 3 7 7 C 1.37875 * 120.00123 * 180.02562 * 5 4 3 8 8 N 1.31512 * 120.00198 * 359.97438 * 7 5 4 9 9 Si 1.86803 * 120.00215 * 179.97438 * 7 5 4 10 10 H 1.48506 * 109.47057 * 359.97438 * 9 7 5 11 11 H 1.48505 * 109.47176 * 119.99516 * 9 7 5 12 12 H 1.48501 * 109.47471 * 239.99814 * 9 7 5 13 13 C 1.34779 * 119.99894 * 94.46657 * 3 2 1 14 14 O 1.21355 * 120.00056 * 354.64693 * 13 3 2 15 15 C 1.49358 * 119.99782 * 174.64358 * 13 3 2 16 16 O 1.21379 * 120.00058 * 354.43274 * 15 13 3 17 17 N 1.34779 * 119.99771 * 174.43799 * 15 13 3 18 18 C 1.39752 * 119.99763 * 185.01762 * 17 15 13 19 19 C 1.39335 * 120.49386 * 35.09269 * 18 17 15 20 20 C 1.38489 * 118.35743 * 179.72662 * 19 18 17 21 21 C 1.38285 * 119.24145 * 0.24926 * 20 19 18 22 22 C 1.50701 * 119.53810 * 179.97438 * 21 20 19 23 23 N 1.31862 * 120.92914 * 0.02562 * 21 20 19 24 24 C 1.31811 * 121.80301 * 0.02562 * 23 21 20 25 25 H 1.09004 * 109.47383 * 299.99956 * 1 2 3 26 26 H 1.09000 * 109.47416 * 59.99914 * 1 2 3 27 27 H 1.08999 * 109.47330 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47349 * 239.99287 * 2 1 3 29 29 H 1.09012 * 109.47084 * 120.00296 * 2 1 3 30 30 H 1.09000 * 109.47405 * 24.85146 * 4 3 2 31 31 H 1.09000 * 109.47306 * 144.84979 * 4 3 2 32 32 H 0.96999 * 120.00326 * 179.97438 * 8 7 5 33 33 H 0.96993 * 120.00170 * 5.01137 * 17 15 13 34 34 H 1.08003 * 120.82388 * 0.02562 * 19 18 17 35 35 H 1.07999 * 120.38297 * 180.23467 * 20 19 18 36 36 H 1.08996 * 109.46731 * 89.99757 * 22 21 20 37 37 H 1.09001 * 109.47092 * 209.99962 * 22 21 20 38 38 H 1.09000 * 109.46741 * 330.00160 * 22 21 20 39 39 H 1.08000 * 119.67068 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3811 0.0000 4 6 2.1693 2.1047 -1.2648 5 6 3.5926 1.9849 -1.7452 6 1 4.3129 1.4261 -1.1661 7 6 3.9757 2.5896 -2.9236 8 7 3.0988 3.2705 -3.6286 9 14 5.7402 2.4418 -3.5188 10 1 6.5223 1.6300 -2.5520 11 1 5.7602 1.7827 -4.8494 12 1 6.3409 3.7955 -3.6279 13 6 2.3286 1.9862 1.1637 14 8 2.1125 1.4232 2.2168 15 6 2.9386 3.3495 1.1571 16 8 3.2480 3.8709 0.1055 17 7 3.1456 4.0008 2.3188 18 6 3.6181 5.3159 2.3079 19 6 3.2253 6.2001 1.3053 20 6 3.7159 7.4947 1.3406 21 6 4.5765 7.8634 2.3583 22 6 5.1148 9.2703 2.4029 23 7 4.9336 7.0010 3.2897 24 6 4.4912 5.7594 3.2931 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5139 0.8901 30 1 1.4974 1.6784 -2.0097 31 1 1.9241 3.1559 -1.1136 32 1 3.3684 3.6963 -4.4575 33 1 2.9665 3.5567 3.1623 34 1 2.5510 5.8851 0.5226 35 1 3.4298 8.2082 0.5820 36 1 4.4424 9.8982 2.9874 37 1 6.1022 9.2671 2.8646 38 1 5.1891 9.6632 1.3889 39 1 4.8058 5.0819 4.0731 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000123864334.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:09 Heat of formation + Delta-G solvation = -41.576577 kcal Electronic energy + Delta-G solvation = -23330.458508 eV Core-core repulsion = 19851.959309 eV Total energy + Delta-G solvation = -3478.499200 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.137 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.20524 -41.06369 -39.49941 -37.49599 -36.11490 -34.69042 -33.31540 -32.66808 -32.04110 -29.12142 -28.40857 -26.11859 -25.03199 -24.70953 -23.78155 -22.34927 -20.82780 -19.19731 -18.60945 -18.40465 -17.59404 -17.41484 -17.05597 -16.72743 -16.46521 -16.00683 -15.47435 -15.27625 -15.01245 -14.81241 -14.49631 -14.31856 -14.17589 -13.65953 -13.52376 -13.30351 -13.16137 -13.07574 -12.94527 -12.74132 -12.71762 -12.38964 -12.11518 -11.85863 -11.77838 -11.66262 -10.81020 -10.72600 -10.51233 -10.15626 -9.67286 -9.25890 -8.16073 -6.22958 -0.13507 0.21699 0.58891 1.34454 1.35496 1.38622 1.47525 2.17755 2.38060 2.57323 2.76684 3.18297 3.32435 3.45453 3.81002 3.84430 4.01145 4.14386 4.25325 4.34196 4.50902 4.62865 4.74233 4.75025 4.84504 4.91430 4.93830 5.00839 5.10488 5.16670 5.21438 5.28202 5.36840 5.51465 5.74334 5.75203 6.03798 6.10212 6.28905 6.72946 6.80792 6.92340 7.04784 7.42553 8.92462 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.012552 B = 0.005790 C = 0.004344 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2230.161468 B = 4834.624850 C = 6443.458460 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.103 3.897 3 N -0.565 5.565 4 C 0.251 3.749 5 C -0.512 4.512 6 H 0.043 0.957 7 C 0.023 3.977 8 N -0.921 5.921 9 Si 0.947 3.053 10 H -0.274 1.274 11 H -0.272 1.272 12 H -0.286 1.286 13 C 0.506 3.494 14 O -0.557 6.557 15 C 0.486 3.514 16 O -0.468 6.468 17 N -0.640 5.640 18 C 0.083 3.917 19 C -0.091 4.091 20 C -0.152 4.152 21 C 0.100 3.900 22 C -0.097 4.097 23 N -0.482 5.482 24 C 0.085 3.915 25 H 0.049 0.951 26 H 0.050 0.950 27 H 0.094 0.906 28 H 0.084 0.916 29 H 0.084 0.916 30 H 0.024 0.976 31 H 0.038 0.962 32 H 0.263 0.737 33 H 0.430 0.570 34 H 0.124 0.876 35 H 0.159 0.841 36 H 0.093 0.907 37 H 0.077 0.923 38 H 0.090 0.910 39 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.314 5.188 11.308 12.510 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.018 4.018 3 N -0.295 5.295 4 C 0.131 3.869 5 C -0.551 4.551 6 H 0.061 0.939 7 C -0.176 4.176 8 N -0.561 5.561 9 Si 0.774 3.226 10 H -0.199 1.199 11 H -0.198 1.198 12 H -0.212 1.212 13 C 0.288 3.712 14 O -0.438 6.438 15 C 0.268 3.732 16 O -0.338 6.338 17 N -0.290 5.290 18 C -0.014 4.014 19 C -0.119 4.119 20 C -0.172 4.172 21 C -0.038 4.038 22 C -0.154 4.154 23 N -0.192 5.192 24 C -0.074 4.074 25 H 0.068 0.932 26 H 0.069 0.931 27 H 0.113 0.887 28 H 0.103 0.897 29 H 0.102 0.898 30 H 0.042 0.958 31 H 0.056 0.944 32 H 0.072 0.928 33 H 0.269 0.731 34 H 0.142 0.858 35 H 0.176 0.824 36 H 0.112 0.888 37 H 0.096 0.904 38 H 0.109 0.891 39 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges -0.704 5.558 11.495 12.787 hybrid contribution 0.141 -0.667 -1.077 1.275 sum -0.563 4.891 10.417 11.522 Atomic orbital electron populations 1.22027 0.94017 1.03586 1.01551 1.21700 0.95789 0.80822 1.03497 1.48284 1.59337 1.14715 1.07160 1.19383 0.96198 0.92275 0.79088 1.21360 0.95678 1.31973 1.06059 0.93895 1.25458 1.00540 0.94747 0.96837 1.70002 1.35470 1.35002 1.15665 0.85679 0.81029 0.77573 0.78354 1.19888 1.19760 1.21240 1.19830 0.80135 0.86740 0.84520 1.90641 1.55875 1.66690 1.30637 1.20529 0.80785 0.87533 0.84377 1.91030 1.45208 1.67142 1.30394 1.42959 1.64657 1.11680 1.09711 1.18910 0.98441 0.84596 0.99438 1.21692 0.98909 0.93349 0.97971 1.22129 0.98658 0.96002 1.00366 1.21833 0.94254 0.97714 0.90024 1.20758 1.01971 0.88294 1.04346 1.67568 1.23466 1.02587 1.25570 1.22922 0.92447 0.93516 0.98541 0.93193 0.93060 0.88707 0.89742 0.89769 0.95783 0.94390 0.92797 0.73065 0.85791 0.82373 0.88845 0.90446 0.89137 0.79926 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.32 10.24 71.98 0.74 -3.58 16 2 C 0.10 3.50 6.11 86.38 0.53 4.03 16 3 N -0.56 -23.64 2.47 -827.87 -2.04 -25.69 16 4 C 0.25 12.47 4.77 85.63 0.41 12.88 16 5 C -0.51 -27.99 7.73 25.60 0.20 -27.79 16 6 H 0.04 2.40 7.81 -2.91 -0.02 2.37 16 7 C 0.02 1.31 5.46 84.65 0.46 1.77 16 8 N -0.92 -53.44 13.29 21.45 0.28 -53.15 16 9 Si 0.95 44.74 29.54 68.60 2.03 46.77 16 10 H -0.27 -12.80 7.11 99.48 0.71 -12.09 16 11 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 12 H -0.29 -13.56 7.11 99.48 0.71 -12.85 16 13 C 0.51 20.58 7.68 87.24 0.67 21.25 16 14 O -0.56 -21.92 16.05 -3.26 -0.05 -21.97 16 15 C 0.49 19.59 7.44 87.24 0.65 20.24 16 16 O -0.47 -22.42 10.00 -3.34 -0.03 -22.45 16 17 N -0.64 -20.31 5.33 -304.52 -1.62 -21.93 16 18 C 0.08 2.57 6.26 38.30 0.24 2.81 16 19 C -0.09 -3.00 8.76 22.59 0.20 -2.80 16 20 C -0.15 -4.08 9.73 22.34 0.22 -3.86 16 21 C 0.10 2.51 6.78 42.57 0.29 2.80 16 22 C -0.10 -1.62 10.17 71.24 0.72 -0.90 16 23 N -0.48 -13.28 10.26 -183.32 -1.88 -15.17 16 24 C 0.09 2.29 11.13 84.86 0.94 3.24 16 25 H 0.05 1.44 8.14 -2.38 -0.02 1.43 16 26 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 27 H 0.09 2.04 8.14 -2.39 -0.02 2.02 16 28 H 0.08 2.82 8.11 -2.39 -0.02 2.80 16 29 H 0.08 2.72 7.37 -2.38 -0.02 2.70 16 30 H 0.02 1.24 8.03 -2.39 -0.02 1.22 16 31 H 0.04 2.08 5.93 -2.39 -0.01 2.06 16 32 H 0.26 14.49 8.31 -92.71 -0.77 13.72 16 33 H 0.43 11.22 8.30 -92.71 -0.77 10.45 16 34 H 0.12 4.64 6.65 -2.91 -0.02 4.62 16 35 H 0.16 3.42 8.06 -2.91 -0.02 3.40 16 36 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 37 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 38 H 0.09 1.23 8.08 -2.39 -0.02 1.21 16 39 H 0.18 3.75 8.06 -2.91 -0.02 3.72 16 Total: -1.00 -67.53 335.93 3.25 -64.29 By element: Atomic # 1 Polarization: 18.92 SS G_CDS: 0.30 Total: 19.23 kcal Atomic # 6 Polarization: 23.81 SS G_CDS: 6.26 Total: 30.07 kcal Atomic # 7 Polarization: -110.67 SS G_CDS: -5.27 Total: -115.94 kcal Atomic # 8 Polarization: -44.34 SS G_CDS: -0.09 Total: -44.42 kcal Atomic # 14 Polarization: 44.74 SS G_CDS: 2.03 Total: 46.77 kcal Total: -67.53 3.25 -64.29 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000123864334.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.713 kcal (2) G-P(sol) polarization free energy of solvation -67.535 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.822 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.245 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.289 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.577 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds