Wall clock time and date at job start Tue Mar 31 2020 06:07:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46503 * 109.46799 * 2 1 4 4 C 1.46500 * 120.00298 * 274.84817 * 3 2 1 5 5 C 1.50701 * 109.47409 * 263.25001 * 4 3 2 6 6 H 1.07996 * 119.99510 * 359.97438 * 5 4 3 7 7 C 1.37878 * 119.99859 * 180.02562 * 5 4 3 8 8 N 1.31512 * 119.99735 * 359.97438 * 7 5 4 9 9 Si 1.86794 * 119.99742 * 179.97438 * 7 5 4 10 10 H 1.48506 * 109.47255 * 89.99772 * 9 7 5 11 11 H 1.48493 * 109.47440 * 209.99952 * 9 7 5 12 12 H 1.48501 * 109.47346 * 330.00098 * 9 7 5 13 13 C 1.34782 * 119.99923 * 94.85396 * 3 2 1 14 14 O 1.21359 * 119.99802 * 354.69731 * 13 3 2 15 15 C 1.49347 * 119.99984 * 174.69687 * 13 3 2 16 16 O 1.21375 * 120.00473 * 0.54353 * 15 13 3 17 17 N 1.34780 * 120.00044 * 180.53362 * 15 13 3 18 18 C 1.39751 * 120.00466 * 185.68830 * 17 15 13 19 19 C 1.39342 * 120.48982 * 22.63405 * 18 17 15 20 20 C 1.38482 * 118.35385 * 180.24279 * 19 18 17 21 21 C 1.38287 * 119.24377 * 359.48862 * 20 19 18 22 22 N 1.31871 * 120.92817 * 0.27609 * 21 20 19 23 23 C 1.31805 * 121.80283 * 359.97438 * 22 21 20 24 24 C 1.50694 * 119.67372 * 180.02562 * 23 22 21 25 25 H 1.08998 * 109.46545 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.47118 * 299.99413 * 1 2 3 27 27 H 1.08995 * 109.47361 * 59.99908 * 1 2 3 28 28 H 1.08997 * 109.47118 * 240.00587 * 2 1 3 29 29 H 1.08995 * 109.47361 * 120.00092 * 2 1 3 30 30 H 1.08997 * 109.46637 * 23.25068 * 4 3 2 31 31 H 1.09001 * 109.46736 * 143.25021 * 4 3 2 32 32 H 0.97002 * 119.99276 * 179.97438 * 8 7 5 33 33 H 0.97008 * 119.99710 * 5.69243 * 17 15 13 34 34 H 1.07994 * 120.82260 * 0.02562 * 19 18 17 35 35 H 1.07992 * 120.38338 * 179.76260 * 20 19 18 36 36 H 1.07995 * 119.54198 * 180.25175 * 21 20 19 37 37 H 1.09005 * 109.47130 * 89.99878 * 24 23 22 38 38 H 1.08997 * 109.47580 * 210.00003 * 24 23 22 39 39 H 1.09004 * 109.47194 * 330.00361 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1613 2.1077 -1.2642 5 6 3.5908 2.0222 -1.7337 6 1 4.3198 1.4813 -1.1487 7 6 3.9679 2.6356 -2.9096 8 7 3.0801 3.2947 -3.6216 9 14 5.7399 2.5302 -3.4912 10 1 5.9078 1.3321 -4.3524 11 1 6.0793 3.7495 -4.2678 12 1 6.6413 2.4251 -2.3158 13 6 2.3360 1.9837 1.1631 14 8 2.1275 1.4179 2.2163 15 6 2.9447 3.3475 1.1557 16 8 3.1442 3.9175 0.1029 17 7 3.2723 3.9455 2.3183 18 6 3.7305 5.2658 2.3202 19 6 3.4265 6.1212 1.2631 20 6 3.9076 7.4190 1.3081 21 6 4.6586 7.8238 2.3964 22 7 4.9248 6.9910 3.3836 23 6 4.4910 5.7464 3.3786 24 6 4.8232 4.8359 4.5325 25 1 -0.3632 -1.0277 -0.0005 26 1 -0.3633 0.5137 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 1.8933 -0.5137 -0.8900 29 1 1.8934 -0.5138 0.8899 30 1 1.5056 1.6649 -2.0138 31 1 1.8896 3.1528 -1.1154 32 1 3.3456 3.7264 -4.4486 33 1 3.1901 3.4594 3.1538 34 1 2.8335 5.7795 0.4278 35 1 3.6949 8.1085 0.5046 36 1 5.0327 8.8360 2.4384 37 1 4.0454 4.9135 5.2922 38 1 4.8833 3.8070 4.1778 39 1 5.7812 5.1287 4.9622 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000123898723.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:12 Heat of formation + Delta-G solvation = -16.567529 kcal Electronic energy + Delta-G solvation = -23633.128051 eV Core-core repulsion = 20155.713325 eV Total energy + Delta-G solvation = -3477.414726 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.137 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.93373 -39.67887 -37.98171 -35.90774 -34.65937 -32.86963 -32.70214 -30.70282 -30.51597 -27.57701 -27.12207 -25.16424 -23.37949 -23.09610 -22.05185 -21.24157 -19.39963 -17.77251 -16.91131 -16.74756 -16.20822 -15.89134 -15.77254 -15.27498 -14.76582 -14.46362 -14.29763 -13.89579 -13.60946 -13.50231 -13.07212 -12.95022 -12.45763 -12.38461 -12.26122 -12.04481 -11.91859 -11.71967 -11.57219 -11.00362 -10.90318 -10.79779 -10.66615 -10.49476 -10.03057 -9.74220 -9.56486 -9.35470 -8.69645 -8.34817 -8.04718 -7.89705 -6.08406 -4.10328 1.11031 1.43244 2.10676 2.75936 3.27208 3.34268 3.38212 3.69853 3.97693 4.01744 4.39654 4.42331 4.80601 4.84787 5.07612 5.24369 5.28718 5.43264 5.48201 5.55457 5.59191 5.63180 5.63597 5.74698 6.03127 6.10290 6.14582 6.22984 6.39328 6.41509 6.50370 6.61738 6.93158 7.24311 7.30194 7.44434 7.80348 8.00039 8.07124 8.12293 8.23434 8.56805 8.89266 9.52543 11.00461 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.012315 B = 0.006380 C = 0.004732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2273.195540 B = 4387.591087 C = 5915.705568 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.110 3.890 3 N -0.557 5.557 4 C 0.229 3.771 5 C -0.515 4.515 6 H 0.053 0.947 7 C 0.070 3.930 8 N -0.890 5.890 9 Si 0.893 3.107 10 H -0.281 1.281 11 H -0.285 1.285 12 H -0.276 1.276 13 C 0.507 3.493 14 O -0.560 6.560 15 C 0.487 3.513 16 O -0.425 6.425 17 N -0.653 5.653 18 C 0.116 3.884 19 C -0.090 4.090 20 C -0.152 4.152 21 C 0.069 3.931 22 N -0.467 5.467 23 C 0.090 3.910 24 C -0.104 4.104 25 H 0.061 0.939 26 H 0.054 0.946 27 H 0.059 0.941 28 H 0.083 0.917 29 H 0.077 0.923 30 H 0.034 0.966 31 H 0.063 0.937 32 H 0.262 0.738 33 H 0.418 0.582 34 H 0.162 0.838 35 H 0.137 0.863 36 H 0.154 0.846 37 H 0.077 0.923 38 H 0.072 0.928 39 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.630 2.643 10.790 11.228 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.013 4.013 3 N -0.287 5.287 4 C 0.110 3.890 5 C -0.553 4.553 6 H 0.072 0.928 7 C -0.132 4.132 8 N -0.529 5.529 9 Si 0.721 3.279 10 H -0.207 1.207 11 H -0.211 1.211 12 H -0.201 1.201 13 C 0.290 3.710 14 O -0.442 6.442 15 C 0.268 3.732 16 O -0.292 6.292 17 N -0.301 5.301 18 C 0.017 3.983 19 C -0.118 4.118 20 C -0.172 4.172 21 C -0.089 4.089 22 N -0.177 5.177 23 C -0.051 4.051 24 C -0.162 4.162 25 H 0.080 0.920 26 H 0.073 0.927 27 H 0.078 0.922 28 H 0.101 0.899 29 H 0.095 0.905 30 H 0.052 0.948 31 H 0.081 0.919 32 H 0.072 0.928 33 H 0.256 0.744 34 H 0.180 0.820 35 H 0.155 0.845 36 H 0.171 0.829 37 H 0.096 0.904 38 H 0.091 0.909 39 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -1.180 3.060 10.978 11.458 hybrid contribution 0.546 -0.447 -0.971 1.200 sum -0.634 2.613 10.007 10.362 Atomic orbital electron populations 1.22102 0.96142 1.01658 1.02296 1.21454 0.94038 0.82666 1.03093 1.48315 1.58678 1.13504 1.08224 1.19938 0.97793 0.93248 0.78007 1.21181 0.94154 1.33416 1.06567 0.92845 1.24782 0.97237 0.94782 0.96409 1.69908 1.33691 1.34262 1.15037 0.86585 0.85169 0.77471 0.78701 1.20704 1.21111 1.20085 1.19671 0.80376 0.86354 0.84644 1.90655 1.56235 1.66296 1.30980 1.20525 0.80797 0.88170 0.83675 1.90943 1.45718 1.63649 1.28906 1.43254 1.64602 1.11325 1.10888 1.18638 0.97512 0.84884 0.97237 1.22051 0.98660 0.92219 0.98846 1.22068 0.99163 0.96411 0.99576 1.22583 0.97213 0.99148 0.89919 1.67419 1.20245 1.02657 1.27339 1.20965 0.95495 0.92554 0.96065 1.20659 1.03216 0.97231 0.95063 0.91978 0.92685 0.92191 0.89859 0.90498 0.94756 0.91900 0.92810 0.74416 0.82042 0.84546 0.82912 0.90428 0.90932 0.90092 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.39 10.24 37.16 0.38 -2.01 16 2 C 0.11 1.88 6.11 -4.04 -0.02 1.86 16 3 N -0.56 -11.46 2.48 -175.61 -0.43 -11.89 16 4 C 0.23 5.50 4.79 -5.19 -0.02 5.47 16 5 C -0.51 -13.69 7.76 -34.44 -0.27 -13.96 16 6 H 0.05 1.46 7.81 -52.49 -0.41 1.04 16 7 C 0.07 1.93 5.46 -17.82 -0.10 1.83 16 8 N -0.89 -25.21 13.29 55.43 0.74 -24.47 16 9 Si 0.89 21.53 29.54 -169.99 -5.02 16.51 16 10 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 11 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 12 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 13 C 0.51 10.24 7.67 -11.63 -0.09 10.15 16 14 O -0.56 -11.17 16.04 5.49 0.09 -11.08 16 15 C 0.49 9.61 7.55 -11.63 -0.09 9.52 16 16 O -0.43 -9.67 9.20 5.47 0.05 -9.62 16 17 N -0.65 -10.62 5.01 -10.20 -0.05 -10.68 16 18 C 0.12 1.87 6.45 -83.59 -0.54 1.33 16 19 C -0.09 -1.50 8.85 -39.08 -0.35 -1.84 16 20 C -0.15 -2.12 10.10 -39.47 -0.40 -2.52 16 21 C 0.07 0.92 11.18 -17.52 -0.20 0.73 16 22 N -0.47 -6.93 10.27 -9.30 -0.10 -7.02 16 23 C 0.09 1.32 6.80 -82.36 -0.56 0.76 16 24 C -0.10 -1.17 9.62 36.00 0.35 -0.82 16 25 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 26 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 27 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 28 H 0.08 1.39 8.11 -51.93 -0.42 0.97 16 29 H 0.08 1.27 7.36 -51.93 -0.38 0.89 16 30 H 0.03 0.85 8.02 -51.93 -0.42 0.43 16 31 H 0.06 1.63 5.86 -51.93 -0.30 1.32 16 32 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 33 H 0.42 5.85 6.80 -40.82 -0.28 5.58 16 34 H 0.16 3.00 5.75 -52.49 -0.30 2.70 16 35 H 0.14 1.56 8.06 -52.49 -0.42 1.14 16 36 H 0.15 1.52 8.06 -52.49 -0.42 1.10 16 37 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.07 0.78 6.93 -51.93 -0.36 0.42 16 39 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 LS Contribution 331.49 15.07 5.00 5.00 Total: -1.00 -30.85 331.49 -6.60 -37.45 By element: Atomic # 1 Polarization: 10.28 SS G_CDS: -4.97 Total: 5.31 kcal Atomic # 6 Polarization: 12.40 SS G_CDS: -1.90 Total: 10.49 kcal Atomic # 7 Polarization: -54.22 SS G_CDS: 0.15 Total: -54.06 kcal Atomic # 8 Polarization: -20.84 SS G_CDS: 0.14 Total: -20.70 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -30.85 -6.60 -37.45 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000123898723.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.887 kcal (2) G-P(sol) polarization free energy of solvation -30.850 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.964 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.604 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.454 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.568 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds