Wall clock time and date at job start Tue Mar 31 2020 06:07:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46503 * 109.46799 * 2 1 4 4 C 1.46500 * 120.00298 * 274.84817 * 3 2 1 5 5 C 1.50701 * 109.47409 * 263.25001 * 4 3 2 6 6 H 1.07996 * 119.99510 * 359.97438 * 5 4 3 7 7 C 1.37878 * 119.99859 * 180.02562 * 5 4 3 8 8 N 1.31512 * 119.99735 * 359.97438 * 7 5 4 9 9 Si 1.86794 * 119.99742 * 179.97438 * 7 5 4 10 10 H 1.48506 * 109.47255 * 89.99772 * 9 7 5 11 11 H 1.48493 * 109.47440 * 209.99952 * 9 7 5 12 12 H 1.48501 * 109.47346 * 330.00098 * 9 7 5 13 13 C 1.34782 * 119.99923 * 94.85396 * 3 2 1 14 14 O 1.21359 * 119.99802 * 354.69731 * 13 3 2 15 15 C 1.49347 * 119.99984 * 174.69687 * 13 3 2 16 16 O 1.21375 * 120.00473 * 0.54353 * 15 13 3 17 17 N 1.34780 * 120.00044 * 180.53362 * 15 13 3 18 18 C 1.39751 * 120.00466 * 185.68830 * 17 15 13 19 19 C 1.39342 * 120.48982 * 22.63405 * 18 17 15 20 20 C 1.38482 * 118.35385 * 180.24279 * 19 18 17 21 21 C 1.38287 * 119.24377 * 359.48862 * 20 19 18 22 22 N 1.31871 * 120.92817 * 0.27609 * 21 20 19 23 23 C 1.31805 * 121.80283 * 359.97438 * 22 21 20 24 24 C 1.50694 * 119.67372 * 180.02562 * 23 22 21 25 25 H 1.08998 * 109.46545 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.47118 * 299.99413 * 1 2 3 27 27 H 1.08995 * 109.47361 * 59.99908 * 1 2 3 28 28 H 1.08997 * 109.47118 * 240.00587 * 2 1 3 29 29 H 1.08995 * 109.47361 * 120.00092 * 2 1 3 30 30 H 1.08997 * 109.46637 * 23.25068 * 4 3 2 31 31 H 1.09001 * 109.46736 * 143.25021 * 4 3 2 32 32 H 0.97002 * 119.99276 * 179.97438 * 8 7 5 33 33 H 0.97008 * 119.99710 * 5.69243 * 17 15 13 34 34 H 1.07994 * 120.82260 * 0.02562 * 19 18 17 35 35 H 1.07992 * 120.38338 * 179.76260 * 20 19 18 36 36 H 1.07995 * 119.54198 * 180.25175 * 21 20 19 37 37 H 1.09005 * 109.47130 * 89.99878 * 24 23 22 38 38 H 1.08997 * 109.47580 * 210.00003 * 24 23 22 39 39 H 1.09004 * 109.47194 * 330.00361 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1613 2.1077 -1.2642 5 6 3.5908 2.0222 -1.7337 6 1 4.3198 1.4813 -1.1487 7 6 3.9679 2.6356 -2.9096 8 7 3.0801 3.2947 -3.6216 9 14 5.7399 2.5302 -3.4912 10 1 5.9078 1.3321 -4.3524 11 1 6.0793 3.7495 -4.2678 12 1 6.6413 2.4251 -2.3158 13 6 2.3360 1.9837 1.1631 14 8 2.1275 1.4179 2.2163 15 6 2.9447 3.3475 1.1557 16 8 3.1442 3.9175 0.1029 17 7 3.2723 3.9455 2.3183 18 6 3.7305 5.2658 2.3202 19 6 3.4265 6.1212 1.2631 20 6 3.9076 7.4190 1.3081 21 6 4.6586 7.8238 2.3964 22 7 4.9248 6.9910 3.3836 23 6 4.4910 5.7464 3.3786 24 6 4.8232 4.8359 4.5325 25 1 -0.3632 -1.0277 -0.0005 26 1 -0.3633 0.5137 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 1.8933 -0.5137 -0.8900 29 1 1.8934 -0.5138 0.8899 30 1 1.5056 1.6649 -2.0138 31 1 1.8896 3.1528 -1.1154 32 1 3.3456 3.7264 -4.4486 33 1 3.1901 3.4594 3.1538 34 1 2.8335 5.7795 0.4278 35 1 3.6949 8.1085 0.5046 36 1 5.0327 8.8360 2.4384 37 1 4.0454 4.9135 5.2922 38 1 4.8833 3.8070 4.1778 39 1 5.7812 5.1287 4.9622 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000123898723.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:11 Heat of formation + Delta-G solvation = -36.385928 kcal Electronic energy + Delta-G solvation = -23633.987441 eV Core-core repulsion = 20155.713325 eV Total energy + Delta-G solvation = -3478.274116 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.137 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.32049 -41.05276 -39.48152 -37.49650 -36.07734 -34.69597 -33.96814 -32.09457 -31.83544 -29.08454 -28.58356 -26.58570 -25.02936 -24.64715 -23.22000 -22.59699 -20.86043 -19.25767 -18.64179 -18.38118 -17.64685 -17.26373 -17.04764 -16.84906 -16.48752 -15.96256 -15.68204 -15.30359 -14.96816 -14.71547 -14.50522 -14.31159 -14.19966 -13.63083 -13.41967 -13.34980 -13.22011 -13.17122 -12.89745 -12.73133 -12.70367 -12.36355 -12.14423 -12.06973 -11.81387 -11.68930 -10.84959 -10.61152 -10.48420 -10.04768 -9.67045 -9.21416 -8.16248 -6.23702 -0.13010 0.22656 0.63151 1.31649 1.35916 1.38325 1.46488 2.17480 2.37353 2.56263 2.81482 3.18025 3.30175 3.41812 3.70289 3.93562 4.12351 4.15327 4.29299 4.34222 4.51033 4.55105 4.66751 4.73233 4.74966 4.91707 4.96644 5.01168 5.12297 5.16693 5.24312 5.26432 5.37322 5.52277 5.74216 5.77231 6.02129 6.09825 6.27929 6.70488 6.79733 6.94818 7.02757 7.41997 8.91943 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.012315 B = 0.006380 C = 0.004732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2273.195540 B = 4387.591087 C = 5915.705568 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.103 3.897 3 N -0.563 5.563 4 C 0.248 3.752 5 C -0.516 4.516 6 H 0.043 0.957 7 C 0.025 3.975 8 N -0.919 5.919 9 Si 0.947 3.053 10 H -0.268 1.268 11 H -0.284 1.284 12 H -0.280 1.280 13 C 0.506 3.494 14 O -0.557 6.557 15 C 0.485 3.515 16 O -0.463 6.463 17 N -0.635 5.635 18 C 0.090 3.910 19 C -0.111 4.111 20 C -0.154 4.154 21 C 0.079 3.921 22 N -0.480 5.480 23 C 0.094 3.906 24 C -0.104 4.104 25 H 0.094 0.906 26 H 0.049 0.951 27 H 0.050 0.950 28 H 0.085 0.915 29 H 0.085 0.915 30 H 0.024 0.976 31 H 0.043 0.957 32 H 0.263 0.737 33 H 0.428 0.572 34 H 0.135 0.865 35 H 0.159 0.841 36 H 0.191 0.809 37 H 0.099 0.901 38 H 0.075 0.925 39 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.823 2.755 12.129 12.465 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.018 4.018 3 N -0.294 5.294 4 C 0.128 3.872 5 C -0.555 4.555 6 H 0.061 0.939 7 C -0.175 4.175 8 N -0.559 5.559 9 Si 0.773 3.227 10 H -0.194 1.194 11 H -0.209 1.209 12 H -0.206 1.206 13 C 0.288 3.712 14 O -0.438 6.438 15 C 0.267 3.733 16 O -0.334 6.334 17 N -0.284 5.284 18 C -0.008 4.008 19 C -0.139 4.139 20 C -0.174 4.174 21 C -0.079 4.079 22 N -0.189 5.189 23 C -0.047 4.047 24 C -0.161 4.161 25 H 0.113 0.887 26 H 0.068 0.932 27 H 0.069 0.931 28 H 0.103 0.897 29 H 0.103 0.897 30 H 0.042 0.958 31 H 0.060 0.940 32 H 0.072 0.928 33 H 0.268 0.732 34 H 0.153 0.847 35 H 0.177 0.823 36 H 0.208 0.792 37 H 0.117 0.883 38 H 0.094 0.906 39 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -0.376 3.153 12.371 12.771 hybrid contribution 0.291 -0.416 -1.282 1.379 sum -0.085 2.737 11.088 11.421 Atomic orbital electron populations 1.22030 0.94058 1.03586 1.01537 1.21713 0.95773 0.80807 1.03548 1.48292 1.59168 1.14700 1.07196 1.19449 0.96234 0.92469 0.79072 1.21341 0.95051 1.32763 1.06336 0.93889 1.25456 1.00560 0.94703 0.96761 1.70000 1.35238 1.35213 1.15465 0.85732 0.81001 0.77837 0.78086 1.19371 1.20911 1.20565 1.19787 0.80267 0.86598 0.84578 1.90642 1.56196 1.66377 1.30599 1.20551 0.80597 0.87975 0.84141 1.90942 1.47727 1.64371 1.30319 1.43037 1.63555 1.11520 1.10247 1.18801 0.99202 0.84589 0.98194 1.22020 0.99412 0.93870 0.98575 1.22331 0.98793 0.95616 1.00661 1.23206 0.95575 1.00386 0.88737 1.67561 1.20634 1.02814 1.27934 1.21432 0.94151 0.92970 0.96145 1.20772 1.04415 0.96574 0.94362 0.88687 0.93224 0.93085 0.89712 0.89672 0.95798 0.93963 0.92766 0.73157 0.84702 0.82332 0.79208 0.88277 0.90610 0.89139 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.30 10.24 71.98 0.74 -3.57 16 2 C 0.10 3.45 6.11 86.38 0.53 3.98 16 3 N -0.56 -23.42 2.48 -827.85 -2.05 -25.47 16 4 C 0.25 12.26 4.79 85.63 0.41 12.67 16 5 C -0.52 -27.99 7.76 25.60 0.20 -27.79 16 6 H 0.04 2.37 7.81 -2.91 -0.02 2.35 16 7 C 0.02 1.37 5.46 84.66 0.46 1.83 16 8 N -0.92 -53.02 13.29 21.45 0.28 -52.74 16 9 Si 0.95 44.41 29.54 68.60 2.03 46.43 16 10 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 11 H -0.28 -13.11 7.11 99.48 0.71 -12.41 16 12 H -0.28 -13.23 7.11 99.48 0.71 -12.53 16 13 C 0.51 20.51 7.67 87.24 0.67 21.18 16 14 O -0.56 -21.78 16.04 -3.28 -0.05 -21.83 16 15 C 0.49 19.63 7.55 87.24 0.66 20.29 16 16 O -0.46 -21.98 9.20 -3.32 -0.03 -22.01 16 17 N -0.63 -20.71 5.01 -304.52 -1.53 -22.24 16 18 C 0.09 2.89 6.45 38.30 0.25 3.13 16 19 C -0.11 -3.76 8.85 22.59 0.20 -3.56 16 20 C -0.15 -4.14 10.10 22.34 0.23 -3.92 16 21 C 0.08 1.90 11.18 84.70 0.95 2.85 16 22 N -0.48 -13.19 10.27 -183.34 -1.88 -15.07 16 23 C 0.09 2.60 6.80 42.72 0.29 2.89 16 24 C -0.10 -2.11 9.62 71.23 0.69 -1.42 16 25 H 0.09 2.02 8.14 -2.39 -0.02 2.00 16 26 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 27 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 28 H 0.08 2.79 8.11 -2.39 -0.02 2.77 16 29 H 0.08 2.71 7.36 -2.39 -0.02 2.69 16 30 H 0.02 1.22 8.02 -2.39 -0.02 1.21 16 31 H 0.04 2.30 5.86 -2.39 -0.01 2.28 16 32 H 0.26 14.46 8.31 -92.71 -0.77 13.69 16 33 H 0.43 11.70 6.80 -92.70 -0.63 11.07 16 34 H 0.14 5.34 5.75 -2.91 -0.02 5.32 16 35 H 0.16 3.42 8.06 -2.91 -0.02 3.40 16 36 H 0.19 3.08 8.06 -2.91 -0.02 3.05 16 37 H 0.10 1.60 8.14 -2.38 -0.02 1.58 16 38 H 0.08 1.48 6.93 -2.39 -0.02 1.47 16 39 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16 Total: -1.00 -66.57 331.49 3.48 -63.10 By element: Atomic # 1 Polarization: 20.81 SS G_CDS: 0.45 Total: 21.26 kcal Atomic # 6 Polarization: 22.32 SS G_CDS: 6.26 Total: 28.57 kcal Atomic # 7 Polarization: -110.35 SS G_CDS: -5.17 Total: -115.52 kcal Atomic # 8 Polarization: -43.76 SS G_CDS: -0.08 Total: -43.84 kcal Atomic # 14 Polarization: 44.41 SS G_CDS: 2.03 Total: 46.43 kcal Total: -66.57 3.48 -63.10 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000123898723.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.711 kcal (2) G-P(sol) polarization free energy of solvation -66.575 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.864 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.478 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.096 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.386 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds